Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0019263

Physical Location & Seq

Genomic Coordinates Forward (+)

20861005 .. 20861397

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTACTATTCATAGTCGCTTTTTTCTCCATCGGGTTGGGACCCATCACGTGGGTCTACAGCTCTGAGATCTTTCCGTTGCAGTTGCGAGCACAAGGGTGCAGTATGGGGGTGGCCGTAAACAGGTTGACGAGCGGGGTCATCTCCATGACTTTTATTTCATTGTATAAGGCCATCACGATTGGTGGGGCCTTCTTTCTTTACGCGGGAATTGCTGCGCTTAGTTGGGTCTTCTTTTATACGTTGTATCCAGAAACGCAAGGTCGATCCCTTGAAGATATGGAGGTCTTGTTTGGTAAATACCACAAGTGGAGAGAAGCCAATGCCATGCTTAACAAGACTAAGCAAGCTGATCATGGTTTTGGTGACGTCAACAAGGCTCAAATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

131

Amino Acids

14.53

Weight (kDa)

8.76

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 98	1e-21	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019263)

Species	Orthologous Gene IDs
malus_domestica	MD10G1079000.v1.1 MD10G1079300.v1.1 MD10G1106200.v1.1
pyrus_communis	pycom04g19060 pycom10g06230
rosa_samantha	Rh6AG125200 Rh6BG121200 Rh6CG119500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	206
AciI	CCGC	2 cut(s)	135, 206
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	114
AcvI	CACGTG	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	51, 123
AgsI	TTSAA	1 cut(s)	275
AleI	CACNNNNGTG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	63, 350
AluI	AGCT	2 cut(s)	63, 350
Alw21I	GWGCWC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	3 cut(s)	114, 171, 189
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	41, 189
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	41
BbrPI	CACGTG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	3 cut(s)	38, 53, 182
BceAI	ACGGC	1 cut(s)	101
BciVI	GTATCC	1 cut(s)	258
BclI	TGATCA	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	258
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 189
BmiI	GGNNCC	3 cut(s)	42, 43, 190
BpiI	GAAGAC	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 123
BseLI	CCNNNNNNNGG	2 cut(s)	51, 123
BseMII	CTCAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	116, 173, 191
BsiHKAI	GWGCWC	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	51, 123
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	3 cut(s)	116, 173, 191
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	69, 266, 352
BspACI	CCGC	2 cut(s)	135, 206
BspANI	GGCC	3 cut(s)	116, 173, 191
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	3 cut(s)	42, 43, 190
BspPI	GGATC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	135
BssMI	GATC	3 cut(s)	69, 266, 352
BssNI	GRCGYC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	90, 348
BstDEI	CTNAG	3 cut(s)	66, 221, 342
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	72, 269, 355
BstMBI	GATC	3 cut(s)	69, 266, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	3 cut(s)	116, 173, 191
Cac8I	GCNNGC	2 cut(s)	90, 348
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	41, 189
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	3 cut(s)	148, 328, 356
CviJI	RGCY	7 cut(s)	63, 116, 173, 191, 320, 350, 380
CviKI_1	RGCY	7 cut(s)	63, 116, 173, 191, 320, 350, 380
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	3 cut(s)	66, 221, 342
DpnI	GATC	3 cut(s)	71, 268, 354
DpnII	GATC	3 cut(s)	69, 266, 352
EaeI	YGGCCR	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	51
EcoO109I	RGGNCCY	2 cut(s)	41, 189
FaeI	CATG	3 cut(s)	151, 331, 359
FaiI	YATR	8 cut(s)	14, 107, 149, 168, 240, 281, 329, 357
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	3 cut(s)	147, 327, 355
FauI	CCCGC	2 cut(s)	128, 199
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	116, 173, 191
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	151, 331, 359
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	2 cut(s)	129, 373
HindII	GTYRAC	2 cut(s)	129, 373
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	4 cut(s)	58, 121, 129, 373
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	178, 251
Hpy8I	GTNNAC	4 cut(s)	58, 121, 129, 373
HpyAV	CCTTC	1 cut(s)	202
HpyCH4IV	ACGT	3 cut(s)	50, 242, 369
HpyCH4V	TGCA	2 cut(s)	82, 102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	66, 221, 342
HpySE526I	ACGT	3 cut(s)	50, 242, 369
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	3 cut(s)	151, 331, 359
HspAI	GCGC	1 cut(s)	218
KflI	GGGWCCC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	69, 266, 352
LpnPI	CCDG	2 cut(s)	109, 264
Lsp1109I	GCAGC	1 cut(s)	202
MaeII	ACGT	3 cut(s)	50, 242, 369
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	71, 268, 354
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	3 cut(s)	69, 266, 352
MboII	GAAGA	2 cut(s)	223, 287
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	1 cut(s)	277
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	2 cut(s)	97, 146
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	3 cut(s)	69, 266, 352
NlaIII	CATG	3 cut(s)	151, 331, 359
NlaIV	GGNNCC	3 cut(s)	42, 43, 190
NmuCI	GTSAC	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
PspCI	CACGTG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	42, 43, 190
PspPI	GGNCC	2 cut(s)	41, 189
PspPPI	RGGWCCY	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	2 cut(s)	97, 146
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	69, 266, 352
Sau96I	GGNCC	2 cut(s)	41, 189
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	8 cut(s)	53, 65, 128, 245, 265, 288, 352, 372
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	97, 146
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	2 cut(s)	135, 206
TaiI	ACGT	3 cut(s)	53, 245, 372
TaqI	TCGA	1 cut(s)	265
TasI	AATT	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	57
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.