Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0019263

Physical Location & Seq

Genomic Coordinates Reverse (-)

11431634 .. 11432422

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1079300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCAAGGGAGGCACGGAGACGCCAAACTAGACGAGATTAAAGAAGCTGCAGGAATACCCATAAACTCAAAGGATGAGGTTGTTAAGGTTTCTAAACGCAGCCATGGTGAAGGTATATGGAAGGAATTGCTCCTTCGCCCCACGCCGGCCGTTCGCCACATTTTAATAGCAGCCTTTGATATCCACTTCTTTCAACAATTGTCGGGCACAGACTCTGTGGTTTTGTACAGCCCTAGGATCTTCGAGAAGGCAGGAATCACTTCTTACAATGACAAGCTACTTGCAACCGTGGCTGTTGGATTTGTTAAAACCATTGCAATTTTGGTGGCAACATTTCAAGTTGATTGGTTCGGACGTTGTATTTTGCTTTTGAGCAGCGTGGGTGGAATGGTAGTTTCTTTTACGCTGCTCGGTGTGGGTCTTACGGTCGTTGATCAATCCCACAGCAAGGTCCTGTGGGCCGTCGGGTTGTGCATCATCATGGTACTATTCATCGTCGCTTTTTTCTCCATTGCGTTGGGACCCATCACGTGGGTTTACAGCTCTGAGATCTTTCTGTTACAGTTGCGCACGCAAGGGTGCAGTATAGGGGTGGCCGTAAACAGGGTGACGAGCGGGGTCATCTCTATGACTTTTATTTCATTGTATGAAGCCATCACGATTGGTGGGGCCTTCTTTCTTTATGCGGGAATTGCTGCGCTTAGTTGGGTCTTCTTTTATACGTTGTATCCAGAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

247

Amino Acids

26.87

Weight (kDa)

7.74

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	29 - 246	3.7e-43	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019263)

Species	Orthologous Gene IDs
malus_domestica	MD10G1079000.v1.1 MD10G1079300.v1.1 MD10G1106200.v1.1
pyrus_communis	pycom04g19060 pycom10g06230
rosa_samantha	Rh6AG125200 Rh6BG121200 Rh6CG119500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	569
AccB7I	CCANNNNNTGG	1 cut(s)	531
AccBSI	CCGCTC	1 cut(s)	615
AciI	CCGC	2 cut(s)	615, 686
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	2 cut(s)	147, 594
AcvI	CACGTG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	227, 486
AfiI	CCNNNNNNNGG	4 cut(s)	145, 448, 531, 603
AgsI	TTSAA	2 cut(s)	194, 338
AluBI	AGCT	3 cut(s)	47, 277, 543
AluI	AGCT	3 cut(s)	47, 277, 543
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	4 cut(s)	147, 459, 594, 669
ApeKI	GCWGC	6 cut(s)	47, 99, 170, 375, 406, 695
Asp700I	GAANNNNTTC	1 cut(s)	259
AspA2I	CCTAGG	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	570, 700
AspS9I	GGNCC	4 cut(s)	451, 459, 521, 669
AsuHPI	GGTGA	2 cut(s)	119, 619
AvaII	GGWCC	2 cut(s)	451, 521
AvrII	CCTAGG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	703
BbvI	GCAGC	6 cut(s)	34, 111, 182, 387, 393, 682
BccI	CCATC	2 cut(s)	533, 662
BceAI	ACGGC	3 cut(s)	134, 446, 581
BciVI	GTATCC	1 cut(s)	738
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	29, 234
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	738
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	6 cut(s)	48, 100, 171, 376, 407, 696
BlnI	CCTAGG	1 cut(s)	233
BlsI	GCNGC	6 cut(s)	49, 101, 172, 377, 408, 697
Bme18I	GGWCC	2 cut(s)	451, 521
BmgT120I	GGNCC	4 cut(s)	451, 459, 521, 669
BmiI	GGNNCC	3 cut(s)	522, 523, 670
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	703
BsaAI	YACGTR	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	103, 233, 288
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 448, 531, 603
Bse118I	RCCGGY	1 cut(s)	145
Bse3DI	GCAATG	2 cut(s)	312, 510
BseDI	CCNNGG	3 cut(s)	103, 233, 288
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	4 cut(s)	145, 448, 531, 603
BseMI	GCAATG	2 cut(s)	312, 510
BseMII	CTCAG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	209
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	6 cut(s)	34, 111, 182, 387, 393, 682
BsgI	GTGCAG	1 cut(s)	601
Bsh1285I	CGRYCG	2 cut(s)	150, 429
BshFI	GGCC	4 cut(s)	149, 461, 596, 671
BsiEI	CGRYCG	2 cut(s)	150, 429
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	4 cut(s)	145, 448, 531, 603
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	4 cut(s)	149, 461, 596, 671
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	237, 433, 549
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	2 cut(s)	615, 686
BspANI	GGCC	4 cut(s)	149, 461, 596, 671
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	522, 523, 670
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	615
BsrDI	GCAATG	2 cut(s)	312, 510
BsrFI	RCCGGY	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	103, 233, 288
BssMI	GATC	3 cut(s)	237, 433, 549
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	2 cut(s)	103, 233
Bst4CI	ACNGT	3 cut(s)	289, 427, 564
BstACI	GRCGYC	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	147, 572
BstDEI	CTNAG	2 cut(s)	546, 701
BstDSI	CCRYGG	2 cut(s)	103, 288
BstF5I	GGATG	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	570, 700
BstKTI	GATC	3 cut(s)	240, 436, 552
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	237, 433, 549
BstMCI	CGRYCG	2 cut(s)	150, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 290, 692
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	6 cut(s)	34, 111, 182, 387, 393, 682
BstV2I	GAAGAC	1 cut(s)	703
BstX2I	RGATCY	2 cut(s)	237, 549
BstXI	CCANNNNNNTGG	1 cut(s)	517
BstYI	RGATCY	2 cut(s)	237, 549
BstZI	CGGCCG	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	4 cut(s)	149, 461, 596, 671
BtgI	CCRYGG	2 cut(s)	103, 288
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	147, 572
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	570, 700
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	4 cut(s)	451, 459, 521, 669
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	226, 485
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	2 cut(s)	104, 481
CviQI	GTAC	2 cut(s)	226, 485
DdeI	CTNAG	2 cut(s)	546, 701
DpnI	GATC	3 cut(s)	239, 435, 551
DpnII	GATC	3 cut(s)	237, 433, 549
EaeI	YGGCCR	2 cut(s)	147, 594
EagI	CGGCCG	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	103, 233
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	451, 521
Eco52I	CGGCCG	1 cut(s)	147
Eco72I	CACGTG	1 cut(s)	531
EcoO109I	RGGNCCY	3 cut(s)	451, 521, 669
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	103, 233
ErhI	CCWWGG	2 cut(s)	103, 233
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	107, 484
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	2 cut(s)	103, 480
FauI	CCCGC	2 cut(s)	608, 679
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	6 cut(s)	48, 100, 171, 376, 407, 696
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	6 cut(s)	48, 100, 171, 376, 407, 696
FspBI	CTAG	2 cut(s)	29, 234
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	2 cut(s)	569, 699
GluI	GCNGC	6 cut(s)	48, 100, 171, 376, 407, 696
HaeIII	GGCC	4 cut(s)	149, 461, 596, 671
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	570, 700
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	107, 484
Hin6I	GCGC	2 cut(s)	568, 698
HinP1I	GCGC	2 cut(s)	568, 698
HinfI	GANTC	2 cut(s)	212, 255
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	119, 619
Hpy166II	GTNNAC	2 cut(s)	538, 601
Hpy188I	TCNGA	2 cut(s)	353, 547
Hpy188III	TCNNGA	3 cut(s)	244, 658, 731
Hpy8I	GTNNAC	2 cut(s)	538, 601
Hpy99I	CGWCG	2 cut(s)	467, 500
HpyAV	CCTTC	5 cut(s)	104, 115, 143, 241, 682
HpyCH4III	ACNGT	3 cut(s)	289, 427, 564
HpyCH4IV	ACGT	4 cut(s)	355, 530, 722, 737
HpyCH4V	TGCA	6 cut(s)	4, 50, 284, 317, 474, 582
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 290, 692
HpyF3I	CTNAG	2 cut(s)	546, 701
HpySE526I	ACGT	4 cut(s)	355, 530, 722, 737
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	107, 484
HspAI	GCGC	2 cut(s)	568, 698
KflI	GGGWCCC	1 cut(s)	521
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	237, 433, 549
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	5 cut(s)	36, 159, 237, 467, 589
Lsp1109I	GCAGC	6 cut(s)	34, 111, 182, 387, 393, 682
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	2 cut(s)	29, 234
MaeII	ACGT	4 cut(s)	355, 530, 722, 737
MaeIII	GTNAC	2 cut(s)	558, 607
MalI	GATC	3 cut(s)	239, 435, 551
MbiI	CCGCTC	1 cut(s)	615
MboI	GATC	3 cut(s)	237, 433, 549
MboII	GAAGA	2 cut(s)	232, 703
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	2 cut(s)	237, 549
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	4 cut(s)	125, 197, 318, 690
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	2 cut(s)	3, 70
MroNI	GCCGGC	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	259
MseI	TTAA	4 cut(s)	39, 84, 164, 306
MslI	CAYNNNNRTG	2 cut(s)	479, 626
MspI	CCGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	10, 290, 692
NaeI	GCCGGC	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	237, 433, 549
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	107, 484
NlaIV	GGNNCC	3 cut(s)	522, 523, 670
NmuCI	GTSAC	1 cut(s)	607
NsbI	TGCGCA	1 cut(s)	569
PdiI	GCCGGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	255
PflMI	CCANNNNNTGG	1 cut(s)	531
PkrI	GCNGC	6 cut(s)	49, 101, 172, 377, 408, 697
PleI	GAGTC	1 cut(s)	206
PmaCI	CACGTG	1 cut(s)	531
PmlI	CACGTG	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	531
PpuMI	RGGWCCY	2 cut(s)	451, 521
Psp5II	RGGWCCY	2 cut(s)	451, 521
PspCI	CACGTG	1 cut(s)	531
PspN4I	GGNNCC	3 cut(s)	522, 523, 670
PspPI	GGNCC	4 cut(s)	451, 459, 521, 669
PspPPI	RGGWCCY	2 cut(s)	451, 521
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	237, 549
RsaI	GTAC	2 cut(s)	227, 486
RsaNI	GTAC	2 cut(s)	226, 485
RseI	CAYNNNNRTG	2 cut(s)	479, 626
SaqAI	TTAA	4 cut(s)	39, 84, 164, 306
SatI	GCNGC	6 cut(s)	48, 100, 171, 376, 407, 696
Sau3AI	GATC	3 cut(s)	237, 433, 549
Sau96I	GGNCC	4 cut(s)	451, 459, 521, 669
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	2 cut(s)	451, 521
SmiMI	CAYNNNNRTG	2 cut(s)	479, 626
Sse9I	AATT	4 cut(s)	125, 197, 318, 690
SsiI	CCGC	2 cut(s)	615, 686
SspMI	CTAG	2 cut(s)	29, 234
StyI	CCWWGG	2 cut(s)	103, 233
TaaI	ACNGT	3 cut(s)	289, 427, 564
TaiI	ACGT	4 cut(s)	358, 533, 725, 740
TaqI	TCGA	1 cut(s)	243
TasI	AATT	4 cut(s)	125, 197, 318, 690
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	4 cut(s)	39, 84, 164, 306
Tru9I	TTAA	4 cut(s)	39, 84, 164, 306
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	6 cut(s)	47, 99, 170, 375, 406, 695
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	481, 630, 663
TspGWI	ACGGA	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	531
VpaK11BI	GGWCC	2 cut(s)	451, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmaJI	CCTAGG	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	259
XspI	CTAG	2 cut(s)	29, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.