Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019263

Physical Location & Seq

Genomic Coordinates Forward (+)

13973725 .. 13974324

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG119500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCCACCATAGCCGTCGGATCCGTCAAGACAGTCTTCATCCTCGTCCCAACGTTTTTCCTGGACAGGATAGGACGTCGTCCTTTGCTTCTTTGCAGCGTAGCAGGGATGATAGCCTCACTCGGCTGTCTCGGTTTCGGCCTCACCATCATCGACCACAGCAACGAAAAGGTCATGTGGGCCATTGTGCTCTGCATCACCATGGTCTTATTCTACGTCGCTTTCTTCTCCATCGGAATGGGCCCTATCACATGGGTCTACAGCTCCGAGATCTTCCCGTTAAAGCTACGAGCTCAGGGATGTAGTATTGGAGTCGCCGTCAACAGAGTCGCGAGTGGGATAGTCTCAATGACTTTTATATCCCTGTACAAGGCCATAACTATTGGCGGAGCCTTCTTTCTTTACGCCGGAATTGCAGCGGTTGGCTGGGTGTTCTTATGTACAATGCTACCGGAGACACAGGGGAGAACCCTTGAAGATATGGAAGTCCTTTTTGGGAAGTTCCACAAGTGGAAACAGGCCAATGCTCAGGTCAAGAATAAGCAGGCGGATCATAATAGTAATGGAAATAACACCGCCAACGATGGTCGGTTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

199

Amino Acids

21.67

Weight (kDa)

9.22

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 165	3.8e-36	Sugar (and other) transporter
MFS_1	PF07690	10 - 159	1.7e-07	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019263)

Species	Orthologous Gene IDs
malus_domestica	MD10G1079000.v1.1 MD10G1079300.v1.1 MD10G1106200.v1.1
pyrus_communis	pycom04g19060 pycom10g06230
rosa_samantha	Rh6AG125200 Rh6BG121200 Rh6CG119500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	332
AciI	CCGC	4 cut(s)	387, 419, 548, 576
AclI	AACGTT	1 cut(s)	53
AclWI	GGATC	3 cut(s)	15, 28, 558
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	76
AfaI	GTAC	2 cut(s)	368, 442
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	3 cut(s)	264, 286, 293
AluI	AGCT	3 cut(s)	264, 286, 293
Alw21I	GWGCWC	2 cut(s)	192, 295
Alw26I	GTCTC	3 cut(s)	134, 349, 449
AlwI	GGATC	3 cut(s)	15, 28, 558
AoxI	GGCC	6 cut(s)	3, 139, 180, 241, 372, 519
ApaI	GGGCCC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	96, 416
AspS9I	GGNCC	3 cut(s)	180, 241, 242
AsuHPI	GGTGA	2 cut(s)	136, 190
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	245, 295
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	2 cut(s)	192, 295
BbvI	GCAGC	2 cut(s)	108, 428
BccI	CCATC	3 cut(s)	155, 239, 578
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	3 cut(s)	134, 349, 449
BfmI	CTRYAG	1 cut(s)	259
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	97, 417
BlsI	GCNGC	2 cut(s)	98, 418
Bme1390I	CCNGG	1 cut(s)	62
BmgT120I	GGNCC	3 cut(s)	180, 241, 242
BmiI	GGNNCC	3 cut(s)	22, 243, 391
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	28
Bpu10I	CCTNAGC	2 cut(s)	294, 528
BsaHI	GRCGYC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	3 cut(s)	39, 114, 305
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	308, 542
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	108, 428
BseYI	CCCAGC	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	6 cut(s)	5, 141, 182, 243, 374, 521
BsiHKAI	GWGCWC	2 cut(s)	192, 295
BsiSI	CCGG	2 cut(s)	408, 452
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	3 cut(s)	134, 349, 449
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	6 cut(s)	5, 141, 182, 243, 374, 521
Bsp120I	GGGCCC	1 cut(s)	241
Bsp1286I	GDGCHC	3 cut(s)	192, 245, 295
Bsp1407I	TGTACA	2 cut(s)	366, 440
Bsp143I	GATC	3 cut(s)	20, 270, 550
Bsp19I	CCATGG	1 cut(s)	201
Bsp68I	TCGCGA	1 cut(s)	332
BspACI	CCGC	4 cut(s)	387, 419, 548, 576
BspANI	GGCC	6 cut(s)	5, 141, 182, 243, 374, 521
BspCNI	CTCAG	2 cut(s)	307, 541
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	3 cut(s)	22, 243, 391
BspPI	GGATC	3 cut(s)	15, 28, 558
BsrGI	TGTACA	2 cut(s)	366, 440
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	20, 270, 550
BssNI	GRCGYC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	76
BstAUI	TGTACA	2 cut(s)	366, 440
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	294, 528
BstDSI	CCRYGG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	39, 114, 305
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	3 cut(s)	23, 273, 553
BstMAI	GTCTC	3 cut(s)	134, 349, 449
BstMBI	GATC	3 cut(s)	20, 270, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 413
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	108, 428
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	20, 270
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	2 cut(s)	20, 270
BsuRI	GGCC	6 cut(s)	5, 141, 182, 243, 374, 521
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	39, 114, 305
BtuMI	TCGCGA	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	546
Cfr13I	GGNCC	3 cut(s)	180, 241, 242
Csp6I	GTAC	2 cut(s)	367, 441
CviAII	CATG	3 cut(s)	175, 202, 252
CviQI	GTAC	2 cut(s)	367, 441
DdeI	CTNAG	2 cut(s)	294, 528
DpnI	GATC	3 cut(s)	22, 272, 552
DpnII	GATC	3 cut(s)	20, 270, 550
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	402, 563
Ecl136II	GAGCTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	245, 295
Eco53kI	GAGCTC	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	245, 295
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	178, 205, 255
FaiI	YATR	9 cut(s)	11, 176, 203, 253, 359, 377, 439, 482, 555
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	3 cut(s)	174, 201, 251
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	97, 417
FokI	GGATG	3 cut(s)	26, 121, 312
FriOI	GRGCYC	2 cut(s)	245, 295
Fsp4HI	GCNGC	2 cut(s)	97, 417
GluI	GCNGC	2 cut(s)	97, 417
GsaI	CCCAGC	1 cut(s)	430
HaeIII	GGCC	6 cut(s)	5, 141, 182, 243, 374, 521
HapII	CCGG	2 cut(s)	408, 452
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	178, 205, 255
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	2 cut(s)	312, 327
HpaII	CCGG	2 cut(s)	408, 452
HphI	GGTGA	2 cut(s)	136, 190
Hpy166II	GTNNAC	2 cut(s)	259, 322
Hpy188I	TCNGA	3 cut(s)	20, 236, 268
Hpy188III	TCNNGA	3 cut(s)	28, 331, 535
Hpy8I	GTNNAC	2 cut(s)	259, 322
Hpy99I	CGWCG	3 cut(s)	20, 81, 221
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	3 cut(s)	53, 76, 216
HpyCH4V	TGCA	3 cut(s)	96, 195, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 413
HpyF3I	CTNAG	2 cut(s)	294, 528
HpySE526I	ACGT	3 cut(s)	53, 76, 216
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	178, 205, 255
Kzo9I	GATC	3 cut(s)	20, 270, 550
LmnI	GCTCC	2 cut(s)	269, 389
Lsp1109I	GCAGC	2 cut(s)	108, 428
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	3 cut(s)	53, 76, 216
MalI	GATC	3 cut(s)	22, 272, 552
MboI	GATC	3 cut(s)	20, 270, 550
MboII	GAAGA	4 cut(s)	28, 217, 265, 488
MflI	RGATCY	2 cut(s)	20, 270
MhlI	GDGCHC	3 cut(s)	192, 245, 295
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	411
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	321, 336
MnlI	CCTC	3 cut(s)	53, 127, 152
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	2 cut(s)	200, 236
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	408, 452
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	11, 413
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	20, 270, 550
NlaIII	CATG	3 cut(s)	178, 205, 255
NlaIV	GGNNCC	3 cut(s)	22, 243, 391
NmeAIII	GCCGAG	1 cut(s)	102
NruI	TCGCGA	1 cut(s)	332
PflFI	GACNNNGTC	1 cut(s)	78
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	98, 418
PleI	GAGTC	2 cut(s)	320, 335
PpsI	GAGTC	2 cut(s)	320, 335
Psp124BI	GAGCTC	1 cut(s)	295
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	22, 243, 391
PspOMI	GGGCCC	1 cut(s)	241
PspPI	GGNCC	3 cut(s)	180, 241, 242
PsuI	RGATCY	2 cut(s)	20, 270
PsyI	GACNNNGTC	1 cut(s)	78
RruI	TCGCGA	1 cut(s)	332
RsaI	GTAC	2 cut(s)	368, 442
RsaNI	GTAC	2 cut(s)	367, 441
RseI	CAYNNNNRTG	2 cut(s)	200, 236
SacI	GAGCTC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	97, 417
Sau3AI	GATC	3 cut(s)	20, 270, 550
Sau96I	GGNCC	3 cut(s)	180, 241, 242
SchI	GAGTC	2 cut(s)	321, 336
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	3 cut(s)	192, 245, 295
SetI	ASST	8 cut(s)	56, 79, 174, 219, 266, 288, 295, 534
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	259
SmiMI	CAYNNNNRTG	2 cut(s)	200, 236
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	4 cut(s)	387, 419, 548, 576
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	3 cut(s)	56, 79, 219
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	411
TatI	WGTACW	2 cut(s)	366, 440
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	2 cut(s)	96, 416
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	258
ZraI	GACGTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.