MD10G1170400.v1.1

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0004988
Physical Location & Seq
Forward (+)
26297656 .. 26300989
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1170400.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGGGTCAGGGAACGCCCGGTGGGTTGAACCGACAAGGTCTACCGGGCGACCGTAAGCCCGATGGGAACGACAAGAAAGAGAAGAAGTTCGAGCCGGCGGCTCCGCCTGCCCGAGTCGGCCGGAAACAGCGCAAGCAGAAGGGTCCCGAAGCTGCGGCACGGCTCCCGACGGTTACCCCGCTGACAAAGTGCAAGCTTCGGCTGCTGAAGCTGGAGAGAATCAAGGACTATCTCCTCATGGAGGAGGAGTTCGTCACAAACCAGGAGCGGCTCAAGCCGCAGGAGGAGAAAGCCGAGGAGGATAGATCTAAAGTTGACGATCTCCGAGGCTCACCGATGAGCGTGGGGAATCTGGAGGAGTTAATTGATGAGAATCACGCCATTGTTTCGTCCTCCGTCGGTCCTGAGTACTACGTTGGGATATTGTCCTTCGTGGATAAAGACCAATTGGAACCTGGGTGTGCGATTTTGATGCATAATAAGGTGCTTTCTGTTGTTGGGCTTCTTCAAGACGAAGTTGATCCGATGGTGTCAGTGATGAAGGTTGAGAAAGCTCCGTTGGAGTCATATGCTGACATTGGTGGATTGGATGCCCAGATACAGGAAATTAAAGAAGCTGTTGAGCTCCCACTGACTCATCCCGAGCTATATGAAGACATTGGTATCAGGCCACCTAAGGGAGTCATATTATATGGAGAGCCAGGAACGGGCAAGACCTTGCTTGCAAAGGCAGTGGCAAACTCTACGTCAGCAACCTTTTTGCGTGTTGTTGGTAGTGAGTTGATTCAGAAGTACTTGGGAGATGGTCCAAAATTAGTGAGGGAACTCTTCAGGGTTGCTGATGACCTCTCACCTTCTATCGTCTTCATTGACGAAATTGATGCAGTTGGTACAAAGAGGTATGATGCCCATTCAGGTGGTGAACGTGAAATTCAGAGGACCATGTTGGAGTTACTTAACCAGTTGGATGGTTTTGATTCAAGAGGAGATGTCAAGGTTATTCTCGCAACAAACAGAATTGAAAGCCTTGACCCAGCCTTGCTTCGTCCTGGCCGAATAGATAGGAAGATTGAATTCCCCCTTCCTGATATCAAAACAAGGAGGCGCATTTTCCAGATTCACACATCAAGGATGACGTTGGCTGATGATGTCAACTTGGAAGAGTTTGTCATGACCAAGGATGAGTTTTCCGGGGCTGATATCAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTAAGAGAGCGCCGTATGAAGGTGACGCACACGGACTTCAAGAAGGCGAAGGAAAAGGTGATGTTCAAGAAGAAAGAAGGGGTTCCAGAAGGACTTTATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

447

Amino Acids

49.75

Weight (kDa)

5.91

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 115 - 169 3.9e-10 Proteasomal ATPase OB C-terminal domain
AAA PF00004 228 - 361 1.7e-41 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 383 - 427 4.7e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 40
AciI CCGC 6 cut(s) 98, 104, 155, 179, 268, 278
AclWI GGATC 1 cut(s) 515
AcoI YGGCCR 2 cut(s) 118, 1051
AcsI RAATTY 2 cut(s) 930, 1073
AcuI CTGAAG 3 cut(s) 227, 814, 1239
AfaI GTAC 4 cut(s) 410, 794, 892, 1216
AfiI CCNNNNNNNGG 5 cut(s) 241, 601, 677, 707, 1255
AgsI TTSAA 7 cut(s) 28, 509, 981, 1022, 1073, 1276, 1303
AjnI CCWGG 4 cut(s) 261, 454, 700, 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 8 cut(s) 152, 196, 211, 554, 617, 625, 646, 1223
AluI AGCT 8 cut(s) 152, 196, 211, 554, 617, 625, 646, 1223
Alw21I GWGCWC 1 cut(s) 627
AlwI GGATC 1 cut(s) 515
Ama87I CYCGRG 2 cut(s) 111, 641
AoxI GGCC 3 cut(s) 118, 668, 1051
ApeKI GCWGC 2 cut(s) 152, 202
ApoI RAATTY 2 cut(s) 930, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
Asp700I GAANNNNTTC 2 cut(s) 86, 1317
AspLEI GCGC 3 cut(s) 132, 1107, 1248
AspS9I GGNCC 4 cut(s) 143, 401, 806, 939
AsuC2I CCSGG 3 cut(s) 18, 45, 1192
AsuHPI GGTGA 5 cut(s) 324, 843, 932, 1270, 1306
AvaI CYCGRG 2 cut(s) 111, 641
AvaII GGWCC 4 cut(s) 143, 401, 806, 939
AxyI CCTNAGG 1 cut(s) 675
BaeI ACNNNNGTAYC 2 cut(s) 646, 679
BanII GRGCYC 1 cut(s) 627
BbsI GAAGAC 2 cut(s) 660, 856
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 2 cut(s) 139, 189
BccI CCATC 4 cut(s) 56, 520, 797, 962
BceAI ACGGC 2 cut(s) 176, 1233
BcgI CGANNNNNNTGC 4 cut(s) 454, 488, 863, 897
BciT130I CCWGG 4 cut(s) 263, 456, 702, 1050
BcnI CCSGG 3 cut(s) 18, 45, 1192
BfoI RGCGCY 1 cut(s) 1249
BglII AGATCT 1 cut(s) 305
BisI GCNGC 6 cut(s) 99, 153, 156, 203, 269, 278
BlsI GCNGC 6 cut(s) 100, 154, 157, 204, 270, 279
BmcAI AGTACT 2 cut(s) 410, 794
Bme1390I CCNGG 7 cut(s) 18, 45, 263, 456, 702, 1050, 1192
Bme18I GGWCC 4 cut(s) 143, 401, 806, 939
BmeT110I CYCGRG 2 cut(s) 111, 641
BmgT120I GGNCC 4 cut(s) 143, 401, 806, 939
BmiI GGNNCC 6 cut(s) 102, 144, 145, 164, 453, 1320
BmrFI CCNGG 7 cut(s) 18, 45, 263, 456, 702, 1050, 1192
BmsI GCATC 4 cut(s) 462, 580, 871, 895
BpiI GAAGAC 2 cut(s) 660, 856
BpmI CTGGAG 2 cut(s) 233, 374
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 3 cut(s) 18, 45, 1192
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 5 cut(s) 294, 325, 455, 1176, 1191
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 601, 677, 707, 1255
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 961
Bse21I CCTNAGG 1 cut(s) 675
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 4 cut(s) 263, 456, 702, 1050
BseDI CCNNGG 5 cut(s) 294, 325, 455, 1176, 1191
BseGI GGATG 5 cut(s) 595, 637, 973, 1137, 1186
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 5 cut(s) 241, 601, 677, 707, 1255
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 961
BseRI GAGGAG 7 cut(s) 224, 257, 260, 299, 311, 371, 999
BseX3I CGGCCG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 139, 189
BseYI CCCAGC 1 cut(s) 1033
Bsh1285I CGRYCG 2 cut(s) 52, 121
BshFI GGCC 3 cut(s) 120, 670, 1053
BsiEI CGRYCG 2 cut(s) 52, 121
BsiHKAI GWGCWC 1 cut(s) 627
BsiHKCI CYCGRG 2 cut(s) 111, 641
BsiSI CCGG 5 cut(s) 18, 44, 95, 121, 1191
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 5 cut(s) 241, 601, 677, 707, 1255
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 3 cut(s) 120, 670, 1053
BsoBI CYCGRG 2 cut(s) 111, 641
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 3 cut(s) 305, 319, 520
BspACI CCGC 6 cut(s) 98, 104, 155, 179, 268, 278
BspANI GGCC 3 cut(s) 120, 670, 1053
BspCNI CTCAG 1 cut(s) 397
BspHI TCATGA 1 cut(s) 1170
BspLI GGNNCC 6 cut(s) 102, 144, 145, 164, 453, 1320
BspPI GGATC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 961
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 5 cut(s) 294, 325, 455, 1176, 1191
BssMI GATC 3 cut(s) 305, 319, 520
BssT1I CCWWGG 1 cut(s) 1176
Bst2UI CCWGG 4 cut(s) 263, 456, 702, 1050
Bst4CI ACNGT 2 cut(s) 53, 172
Bst6I CTCTTC 2 cut(s) 833, 1155
BstC8I GCNNGC 6 cut(s) 96, 108, 134, 194, 723, 1233
BstDEI CTNAG 2 cut(s) 405, 675
BstEII GGTNACC 1 cut(s) 172
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 5 cut(s) 595, 637, 973, 1137, 1186
BstH2I RGCGCY 1 cut(s) 1249
BstHHI GCGC 3 cut(s) 132, 1107, 1248
BstKTI GATC 3 cut(s) 308, 322, 523
BstMBI GATC 3 cut(s) 305, 319, 520
BstMCI CGRYCG 2 cut(s) 52, 121
BstMWI GCNNNNNNNGC 5 cut(s) 107, 202, 208, 274, 277
BstNI CCWGG 4 cut(s) 263, 456, 702, 1050
BstPI GGTNACC 1 cut(s) 172
BstSCI CCNGG 7 cut(s) 16, 43, 261, 454, 700, 1048, 1190
BstV1I GCAGC 2 cut(s) 139, 189
BstV2I GAAGAC 2 cut(s) 660, 856
BstX2I RGATCY 1 cut(s) 305
BstXI CCANNNNNNTGG 2 cut(s) 917, 968
BstYI RGATCY 1 cut(s) 305
BstZI CGGCCG 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 3 cut(s) 120, 670, 1053
BtsCI GGATG 5 cut(s) 595, 637, 973, 1137, 1186
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 540, 629, 738
Cac8I GCNNGC 6 cut(s) 96, 108, 134, 194, 723, 1233
CciI TCATGA 1 cut(s) 1170
CfoI GCGC 3 cut(s) 132, 1107, 1248
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 4 cut(s) 143, 401, 806, 939
CseI GACGC 1 cut(s) 1270
Csp6I GTAC 4 cut(s) 409, 793, 891, 1215
CspCI CAANNNNNGTGG 2 cut(s) 714, 749
CviAII CATG 3 cut(s) 238, 943, 1171
CviQI GTAC 4 cut(s) 409, 793, 891, 1215
DdeI CTNAG 2 cut(s) 405, 675
DpnI GATC 3 cut(s) 307, 321, 522
DpnII GATC 3 cut(s) 305, 319, 520
EaeI YGGCCR 2 cut(s) 118, 1051
EagI CGGCCG 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 833, 1155
EarI CTCTTC 2 cut(s) 833, 1155
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 625
EclXI CGGCCG 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 1176
Eco24I GRGCYC 1 cut(s) 627
Eco32I GATATC 2 cut(s) 1090, 1201
Eco47I GGWCC 4 cut(s) 143, 401, 806, 939
Eco52I CGGCCG 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 625
Eco57I CTGAAG 3 cut(s) 227, 814, 1239
Eco81I CCTNAGG 1 cut(s) 675
Eco88I CYCGRG 2 cut(s) 111, 641
Eco91I GGTNACC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 625
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 1073
EcoRII CCWGG 4 cut(s) 261, 454, 700, 1048
EcoRV GATATC 2 cut(s) 1090, 1201
EcoT14I CCWWGG 1 cut(s) 1176
EcoT22I ATGCAT 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 1176
FaeI CATG 3 cut(s) 241, 946, 1174
FaqI GGGAC 1 cut(s) 129
FatI CATG 3 cut(s) 237, 942, 1170
FauI CCCGC 1 cut(s) 186
FauNDI CATATG 1 cut(s) 568
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 6 cut(s) 99, 153, 156, 203, 269, 278
FokI GGATG 5 cut(s) 602, 624, 980, 1144, 1193
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 6 cut(s) 99, 153, 156, 203, 269, 278
GlaI GCGC 3 cut(s) 131, 1106, 1247
GluI GCNGC 6 cut(s) 99, 153, 156, 203, 269, 278
GsaI CCCAGC 1 cut(s) 1037
GsuI CTGGAG 2 cut(s) 233, 374
HaeII RGCGCY 1 cut(s) 1249
HaeIII GGCC 3 cut(s) 120, 670, 1053
HapII CCGG 5 cut(s) 18, 44, 95, 121, 1191
HgaI GACGC 1 cut(s) 1270
HhaI GCGC 3 cut(s) 132, 1107, 1248
Hin1II CATG 3 cut(s) 241, 946, 1174
Hin6I GCGC 3 cut(s) 130, 1105, 1246
HinP1I GCGC 3 cut(s) 130, 1105, 1246
HincII GTYRAC 2 cut(s) 316, 1153
HindII GTYRAC 2 cut(s) 316, 1153
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 5 cut(s) 18, 44, 95, 121, 1191
HphI GGTGA 5 cut(s) 324, 843, 932, 1270, 1306
Hpy166II GTNNAC 4 cut(s) 41, 316, 923, 1153
Hpy188I TCNGA 4 cut(s) 326, 525, 789, 936
Hpy8I GTNNAC 4 cut(s) 41, 316, 923, 1153
Hpy99I CGWCG 2 cut(s) 172, 401
HpyCH4III ACNGT 2 cut(s) 53, 172
HpyCH4IV ACGT 4 cut(s) 414, 746, 925, 1136
HpyCH4V TGCA 4 cut(s) 192, 475, 725, 884
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 202, 208, 274, 277
HpyF3I CTNAG 2 cut(s) 405, 675
HpySE526I ACGT 4 cut(s) 414, 746, 925, 1136
Hsp92II CATG 3 cut(s) 241, 946, 1174
HspAI GCGC 3 cut(s) 130, 1105, 1246
KflI GGGWCCC 1 cut(s) 143
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 3 cut(s) 305, 319, 520
LmnI GCTCC 5 cut(s) 106, 168, 265, 559, 630
Lsp1109I GCAGC 2 cut(s) 139, 189
LweI GCATC 4 cut(s) 462, 580, 871, 895
MaeII ACGT 4 cut(s) 414, 746, 925, 1136
MaeIII GTNAC 4 cut(s) 172, 253, 951, 1258
MalI GATC 3 cut(s) 307, 321, 522
MbiI CCGCTC 1 cut(s) 268
MboI GATC 3 cut(s) 305, 319, 520
MboII GAAGA 8 cut(s) 94, 497, 665, 820, 856, 1078, 1172, 1318
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 8 cut(s) 363, 446, 606, 812, 876, 930, 1017, 1073
MlyI GAGTC 4 cut(s) 123, 572, 628, 690
MmeI TCCRAC 3 cut(s) 540, 927, 945
Mph1103I ATGCAT 1 cut(s) 477
MroNI GCCGGC 1 cut(s) 94
MroXI GAANNNNTTC 2 cut(s) 86, 1317
MseI TTAA 4 cut(s) 362, 609, 957, 1238
MslI CAYNNNNRTG 1 cut(s) 915
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 5 cut(s) 18, 44, 95, 121, 1191
MspR9I CCNGG 7 cut(s) 18, 45, 263, 456, 702, 1050, 1192
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 4 cut(s) 263, 456, 702, 1050
MwoI GCNNNNNNNGC 5 cut(s) 107, 202, 208, 274, 277
NaeI GCCGGC 1 cut(s) 96
NciI CCSGG 3 cut(s) 18, 45, 1192
NdeI CATATG 1 cut(s) 568
NdeII GATC 3 cut(s) 305, 319, 520
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 3 cut(s) 241, 946, 1174
NlaIV GGNNCC 6 cut(s) 102, 144, 145, 164, 453, 1320
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 2 cut(s) 253, 1258
NsiI ATGCAT 1 cut(s) 477
PagI TCATGA 1 cut(s) 1170
PcsI WCGNNNNNNNCGW 1 cut(s) 1051
PdiI GCCGGC 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 86, 1317
PfeI GAWTC 6 cut(s) 219, 349, 373, 784, 977, 1117
PflFI GACNNNGTC 1 cut(s) 36
PkrI GCNGC 6 cut(s) 100, 154, 157, 204, 270, 279
PleI GAGTC 4 cut(s) 122, 571, 628, 689
PpsI GAGTC 4 cut(s) 122, 571, 628, 689
PpuMI RGGWCCY 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 4 cut(s) 261, 454, 700, 1048
PspEI GGTNACC 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 1033
PspGI CCWGG 4 cut(s) 261, 454, 700, 1048
PspN4I GGNNCC 6 cut(s) 102, 144, 145, 164, 453, 1320
PspPI GGNCC 4 cut(s) 143, 401, 806, 939
PspPPI RGGWCCY 1 cut(s) 143
PsuI RGATCY 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 36
RsaI GTAC 4 cut(s) 410, 794, 892, 1216
RsaNI GTAC 4 cut(s) 409, 793, 891, 1215
RseI CAYNNNNRTG 1 cut(s) 915
SacI GAGCTC 1 cut(s) 627
SaqAI TTAA 4 cut(s) 362, 609, 957, 1238
SatI GCNGC 6 cut(s) 99, 153, 156, 203, 269, 278
Sau3AI GATC 3 cut(s) 305, 319, 520
Sau96I GGNCC 4 cut(s) 143, 401, 806, 939
ScaI AGTACT 2 cut(s) 410, 794
SchI GAGTC 4 cut(s) 123, 572, 628, 690
ScrFI CCNGG 7 cut(s) 18, 45, 263, 456, 702, 1050, 1192
SduI GDGCHC 1 cut(s) 627
SfaNI GCATC 4 cut(s) 462, 580, 871, 895
SinI GGWCC 4 cut(s) 143, 401, 806, 939
SmiMI CAYNNNNRTG 1 cut(s) 915
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 8 cut(s) 363, 446, 606, 812, 876, 930, 1017, 1073
SsiI CCGC 6 cut(s) 98, 104, 155, 179, 268, 278
SstI GAGCTC 1 cut(s) 627
StyD4I CCNGG 7 cut(s) 16, 43, 261, 454, 700, 1048, 1190
StyI CCWWGG 1 cut(s) 1176
TaaI ACNGT 2 cut(s) 53, 172
TaiI ACGT 4 cut(s) 417, 749, 928, 1139
TaqI TCGA 1 cut(s) 90
TaqII GACCGA 1 cut(s) 389
TasI AATT 8 cut(s) 363, 446, 606, 812, 876, 930, 1017, 1073
TatI WGTACW 3 cut(s) 408, 792, 1214
TauI GCSGC 4 cut(s) 101, 158, 271, 280
TfiI GAWTC 6 cut(s) 219, 349, 373, 784, 977, 1117
Tru1I TTAA 4 cut(s) 362, 609, 957, 1238
Tru9I TTAA 4 cut(s) 362, 609, 957, 1238
TscAI CASTG 3 cut(s) 540, 636, 738
TseFI GTSAC 2 cut(s) 253, 1258
TseI GCWGC 2 cut(s) 152, 202
Tsp45I GTSAC 2 cut(s) 253, 1258
TspDTI ATGAA 4 cut(s) 554, 666, 856, 1268
TspGWI ACGGA 3 cut(s) 385, 546, 1283
TspRI CASTG 3 cut(s) 540, 636, 738
Tth111I GACNNNGTC 1 cut(s) 36
VpaK11BI GGWCC 4 cut(s) 143, 401, 806, 939
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 2 cut(s) 930, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 40
XmnI GAANNNNTTC 2 cut(s) 86, 1317
ZrmI AGTACT 2 cut(s) 410, 794
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.