Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004988

Physical Location & Seq

Genomic Coordinates Forward (+)

55099843 .. 55103182

Gene Structure 3340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0400900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTCGACTCTATCATGGAGTTCTACCTCATTGCTTCAAAGCTTTACAGGAAACATAAACCAAGCGACTAAAATAGCAGACAGAGGAACAGCCTTTGTCGTTATCGCTCAAAAGAAAGCCAAGAAAGCTCGAACGATAATTCTGAAGGAGGATGTAGCTGACCTGGGAAAGCAAGGGCAGCTTGTTAGTGTGAAAGCTGGTTATTACAGGAATTTTCTGCTACCAACAGGAAAGGCCCAGATTGTTACTCCTGTGCTGCTCAAGGAAATGAAAATGGAAGAGGAAAGGATTGAGGCTGAGAAAAAGCGGGTAAAAGAAGAGGCGCAGCAACTTGCTCTTATATTTGAAACTGTTGGAGGATTCAAGGTGAAGCGCAAAGGTGGAAAAGGAAAGCTGATTTTTGGAAGCGTCACACCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAGGGATGTAGACAAGCGAATAGTATCTCTTCCAGAGATTCGTGAGATTGGAGAATATATTGCTGAACTAAAGCTTCATCCAGAAGTGAGTGCTAAAGTACGGGTGATTGTTTCTGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203

Pfam Domains

Protein Families

AAA

Protein Analysis

192

Amino Acids

21.26

Weight (kDa)

9.79

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L9_N	PF01281	47 - 90	2.1e-17	Ribosomal protein L9, N-terminal domain
Ribosomal_L9_C	PF03948	107 - 190	3.6e-19	Ribosomal protein L9, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20140 AT4G29040
fragaria_vesca	FvH4_2g19750 FvH4_3g38770
malus_domestica	MD05G1182100.v1.1 MD10G1170400.v1.1
prunus_persica	Prupe.8G208900_v2.0.a1
pyrus_communis	pycom05g16750
rosa_chinensis	RchiOBHm_Chr5g0069941 RchiOBHm_Chr6g0285461
rosa_laevigata	RLG00000012638 RLG00000036109
rosa_multiflora	Rmu_sc0000284.1_g000014 Rmu_sc0002367.1_g000014 Rmu_sc0007704.1_g000004
rosa_roxburghii	Rroxscaffold_1G00011130 Rroxscaffold_7G00183130
rosa_rugosa	Rorug05G0400800 Rorug05G0400900 Rorug06G0174800
rosa_samantha	Rh5AG458100 Rh5BG476800 Rh5CG500600 Rh5DG488700 Rh6AG286200 Rh6BG287400 Rh6CG288500 Rh6DG281300
rosa_wichuraiana	Rw5G042760 Rw6G024580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	465
AciI	CCGC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	555
AgsI	TTSAA	4 cut(s)	41, 350, 367, 455
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	7 cut(s)	45, 131, 161, 184, 200, 397, 529
AluI	AGCT	7 cut(s)	45, 131, 161, 184, 200, 397, 529
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	181, 259, 328
ApoI	RAATTY	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	328, 378
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	382, 571
BbvI	GCAGC	3 cut(s)	193, 246, 340
BciT130I	CCWGG	1 cut(s)	167
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	3 cut(s)	182, 260, 329
BlsI	GCNGC	3 cut(s)	183, 261, 330
Bme1390I	CCNGG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	248, 405
BsaJI	CCNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	160, 466, 532
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	193, 246, 340
BshFI	GGCC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	3 cut(s)	276, 315, 489
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	160, 466, 532
BstHHI	GCGC	2 cut(s)	328, 378
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 181
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	193, 246, 340
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	3 cut(s)	160, 466, 532
CfoI	GCGC	2 cut(s)	328, 378
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	1 cut(s)	18
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eam1104I	CTCTTC	3 cut(s)	276, 315, 489
EarI	CTCTTC	3 cut(s)	276, 315, 489
Eco57I	CTGAAG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	21
FaiI	YATR	5 cut(s)	19, 59, 344, 437, 513
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	1 cut(s)	17
FauI	CCCGC	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	3 cut(s)	182, 260, 329
FokI	GGATG	3 cut(s)	167, 473, 519
Fsp4HI	GCNGC	3 cut(s)	182, 260, 329
GlaI	GCGC	2 cut(s)	327, 377
GluI	GCNGC	3 cut(s)	182, 260, 329
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	2 cut(s)	328, 378
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	2 cut(s)	326, 376
HinP1I	GCGC	2 cut(s)	326, 376
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	2 cut(s)	43, 527
HinfI	GANTC	3 cut(s)	10, 363, 493
HphI	GGTGA	2 cut(s)	382, 571
Hpy166II	GTNNAC	2 cut(s)	433, 466
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	4 cut(s)	422, 488, 497, 536
Hpy8I	GTNNAC	2 cut(s)	433, 466
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 181
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	2 cut(s)	326, 376
Kzo9I	GATC	1 cut(s)	424
Lsp1109I	GCAGC	3 cut(s)	193, 246, 340
MaeIII	GTNAC	2 cut(s)	247, 412
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	3 cut(s)	293, 332, 476
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	3 cut(s)	141, 214, 574
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	8 cut(s)	40, 80, 145, 277, 289, 316, 353, 429
MseI	TTAA	1 cut(s)	577
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	128, 181
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	363, 493
PkrI	GCNGC	3 cut(s)	183, 261, 330
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	3 cut(s)	182, 260, 329
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	263, 420
SmoI	CTYRAG	2 cut(s)	263, 420
Sse9I	AATT	3 cut(s)	141, 214, 574
SsiI	CCGC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	8, 133
TasI	AATT	3 cut(s)	141, 214, 574
TfiI	GAWTC	2 cut(s)	363, 493
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	181, 259, 328
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	287, 521
XapI	RAATTY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.