Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004988

Physical Location & Seq

Genomic Coordinates Forward (+)

14136479 .. 14145133

Gene Structure 8655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

ATGGGTCAAGGTTTAGGAACTCAGGGTGGCTCAAATCAACAGAGCGATCAAAACCCTAATGGCGACAAGAAGGAGAAGAAGTACGAGCCGGCAGCTCCGCCGGCTCGAGTGGGCAAAAAACAGCGCAAGCAAAAGGGCCCCGAAGTTGCGACTCGGCTTCCAACGGTGAGTCCTCTCACCAAATGCAAACTCAGGCTATTGAAGCTAGAAAGAATCAAAGATTATCTTCTCATGGAGGAAGAGTTTGTATCAAACCAAGAGCGACTCAAACCAAAAGAGAATGCAGAAGAGGAAGACAAATCCAAGGTCGTTGAAGGTCTCCGAGGGTCGCCTCTGGACGTTGGCACTCTCGAAGAGCTCATCGACGACAATCACGCAATTGTGTCGTCCTCGTCCGGGACACACTACGTTGGGATCATGTCGTTTGTTGACAAGGACCAGCTGGAGCCAGGCTGTGACGTTTTGCTCCACAACAAGCAGCATTCCGTTGTGGGGCTTCTTCAAGATGAAGTTGATCCAATGGTGGCGGTAATGAAGGTTGAAAAGGCTCCGGTGGAGTCGTACGCCGACATTGGTGGGTTGGAGTCCCAAATACAGGAGATCAAAGAAGCCGTTGAGCTCCCGCTCACACATCCCGAGCTATATGAAGACATTGGAATCAAGCCTCCGAAGGGTGTCATATTATACGGAGAGCCCGGAACAGGCAAGACATTGCTTGCGAAAGCGGTGGCGAATTCGACGTCAGCGACTTTCTTGAGGGTTGTTGGGAGTGAGTTGATTCAGAAGTACTCGGGAGACGGTCAGAGGCTAGTGAGGGAGATCTTCAGGGTTGCTGATGAGCTCTCGCCCTCGATTGTGTTCATCGATGAAGTTGATGCAGTTGGAACAAAAAGGTACGATGCGCATTCTGGCGGGGAGCGTGAGATTCAGAGAACCATGCTGGAGTTGCTCAACCAGTTAGATGGTTTTGATTCCAGAGGAGATGTAAAGGTGATTCTCGCCACTAATAAGATTGAGAGTCTCGACCCGGCCTTGATTCGTCCTGGGAGGATTGACAGGAAGATTGAGTTCCCGCTACCTGATATCCAAACTAGAAGGCGGATCTTTCATATTCACACGTCGAAGATGACGATGGCCGACGATGTCAACTTGGAGGAGCTGGTGATGACGAAAGATGAGTACTCCGGGGCGGACATAAAGGCCATATGCACTGAAGCAGGGATGCTTGCTCTGAGGGAGAGACGCATGAAGGTCACTCATGGGGACTTCAAGAAGGCAAAAGAGAGAGTGATGTACAAGAAGAAAGAAGGGATTCCCGAGGGCCTTTATTTGAAGACAGGTTTTGGGCGGGGAATCCAGGTTGGATGTGAAGAGCAGGTCGAAAAACTCTTCGAGGAAGACGATGAGCTAGATCTTGAGAGAGATTTCACGCTTGTGAAGAACTATTTTTGGGTTAGAAATCTTCTACAAAACTGTTACCAAGACAAATATTTCCTTGCAATAAATTATAGCAAACCCGAACACTCCTTCCTCTCCAATCGGTCAAAAACTAAGCAGCGTGATTATCACACCTCAAAAATTCACAACCAAAACACAAAAAACCAAAAACCTTCACTTAGTAGTATGATGAAGGACAAAAGCCCAGCTAGGAATTTCAGTAGGGGATCGGAAGCTAAATATGTGATCCGGGTTGCGTTCAAAACTCGAGGGCTTCAAAGGCAGCAATTGGGGAAGGACAACATGCACCTCAAAATGAATCCTACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203

Pfam Domains

Protein Families

AAA

Protein Analysis

589

Amino Acids

66.49

Weight (kDa)

7.63

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prot_ATP_ID_OB_C	PF16450	114 - 165	2.7e-07	Proteasomal ATPase OB C-terminal domain
AAA	PF00004	226 - 359	4e-40	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	381 - 425	8.5e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20140 AT4G29040
fragaria_vesca	FvH4_2g19750 FvH4_3g38770
malus_domestica	MD05G1182100.v1.1 MD10G1170400.v1.1
prunus_persica	Prupe.8G208900_v2.0.a1
pyrus_communis	pycom05g16750
rosa_chinensis	RchiOBHm_Chr5g0069941 RchiOBHm_Chr6g0285461
rosa_laevigata	RLG00000012638 RLG00000036109
rosa_multiflora	Rmu_sc0000284.1_g000014 Rmu_sc0002367.1_g000014 Rmu_sc0007704.1_g000004
rosa_roxburghii	Rroxscaffold_1G00011130 Rroxscaffold_7G00183130
rosa_rugosa	Rorug05G0400800 Rorug05G0400900 Rorug06G0174800
rosa_samantha	Rh5AG458100 Rh5BG476800 Rh5CG500600 Rh5DG488700 Rh6AG286200 Rh6BG287400 Rh6CG288500 Rh6DG281300
rosa_wichuraiana	Rw5G042760 Rw6G024580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	743
Acc16I	TGCGCA	1 cut(s)	903
Acc36I	ACCTGC	1 cut(s)	1366
AccBSI	CCGCTC	1 cut(s)	625
AciI	CCGC	9 cut(s)	98, 527, 623, 725, 912, 1073, 1099, 1190, 1348
AclWI	GGATC	5 cut(s)	422, 509, 1109, 1672, 1678
AcoI	YGGCCR	1 cut(s)	1134
AcsI	RAATTY	3 cut(s)	733, 1578, 1651
AcuI	CTGAAG	2 cut(s)	808, 1233
AcyI	GRCGYC	1 cut(s)	740
AfaI	GTAC	6 cut(s)	83, 563, 788, 896, 1181, 1295
AfiI	CCNNNNNNNGG	5 cut(s)	396, 492, 595, 671, 701
AflIII	ACRYGT	1 cut(s)	1116
AgsI	TTSAA	8 cut(s)	202, 314, 503, 542, 1270, 1333, 1699, 1715
AhlI	ACTAGT	1 cut(s)	1763
AjiI	CACGTC	1 cut(s)	1119
AjnI	CCWGG	3 cut(s)	448, 1042, 1356
AleI	CACNNNNGTG	1 cut(s)	1433
AloI	GAACNNNNNNTCC	2 cut(s)	1512, 1544
Alw21I	GWGCWC	3 cut(s)	360, 621, 843
Alw26I	GTCTC	4 cut(s)	323, 789, 1025, 1234
AlwI	GGATC	5 cut(s)	422, 509, 1109, 1672, 1678
Ama87I	CYCGRG	5 cut(s)	105, 635, 790, 1316, 1704
AoxI	GGCC	5 cut(s)	136, 1029, 1134, 1200, 1321
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	4 cut(s)	92, 478, 1555, 1720
ApoI	RAATTY	3 cut(s)	733, 1578, 1651
ArsI	GACNNNNNNTTYG	4 cut(s)	291, 323, 725, 757
Asp700I	GAANNNNTTC	1 cut(s)	1311
AspLEI	GCGC	2 cut(s)	126, 904
AspS9I	GGNCC	4 cut(s)	136, 137, 436, 1321
AsuC2I	CCSGG	5 cut(s)	397, 696, 1028, 1186, 1688
AsuHPI	GGTGA	4 cut(s)	169, 178, 1003, 1174
AvaI	CYCGRG	5 cut(s)	105, 635, 790, 1316, 1704
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	5 cut(s)	140, 360, 621, 696, 843
BbsI	GAAGAC	4 cut(s)	300, 654, 1340, 1404
Bbv12I	GWGCWC	3 cut(s)	360, 621, 843
BbvI	GCAGC	4 cut(s)	104, 490, 1567, 1732
BccI	CCATC	2 cut(s)	956, 1126
BceAI	ACGGC	1 cut(s)	596
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BciT130I	CCWGG	3 cut(s)	450, 1044, 1358
BcnI	CCSGG	5 cut(s)	397, 696, 1028, 1186, 1688
BcoDI	GTCTC	4 cut(s)	323, 789, 1025, 1234
BcuI	ACTAGT	1 cut(s)	1763
BfaI	CTAG	6 cut(s)	206, 809, 1092, 1409, 1647, 1764
BfuAI	ACCTGC	1 cut(s)	1366
BglII	AGATCT	2 cut(s)	819, 1411
BisI	GCNGC	4 cut(s)	93, 479, 1556, 1721
BlsI	GCNGC	4 cut(s)	94, 480, 1557, 1722
BmcAI	AGTACT	2 cut(s)	788, 1181
Bme1390I	CCNGG	8 cut(s)	397, 450, 696, 1028, 1044, 1186, 1358, 1688
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	5 cut(s)	105, 635, 790, 1316, 1704
BmgBI	CACGTC	1 cut(s)	1119
BmgT120I	GGNCC	4 cut(s)	136, 137, 436, 1321
BmiI	GGNNCC	4 cut(s)	138, 139, 447, 549
BmrFI	CCNGG	8 cut(s)	397, 450, 696, 1028, 1044, 1186, 1358, 1688
BmsI	GCATC	3 cut(s)	865, 889, 1212
BpiI	GAAGAC	4 cut(s)	300, 654, 1340, 1404
BpmI	CTGGAG	2 cut(s)	464, 962
BpuEI	CTTGAG	2 cut(s)	775, 1436
BpuMI	CCSGG	5 cut(s)	397, 696, 1028, 1186, 1688
Bsa29I	ATCGAT	1 cut(s)	864
BsaHI	GRCGYC	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	5 cut(s)	303, 322, 1043, 1185, 1317
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 227, 257
Bsc4I	CCNNNNNNNGG	5 cut(s)	396, 492, 595, 671, 701
Bse118I	RCCGGY	2 cut(s)	88, 100
Bse1I	ACTGG	1 cut(s)	955
Bse3DI	GCAATG	1 cut(s)	710
BseBI	CCWGG	3 cut(s)	450, 1044, 1358
BseCI	ATCGAT	1 cut(s)	864
BseDI	CCNNGG	5 cut(s)	303, 322, 1043, 1185, 1317
BseGI	GGATG	3 cut(s)	631, 1227, 1370
BseLI	CCNNNNNNNGG	5 cut(s)	396, 492, 595, 671, 701
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	35, 205, 1223
BseNI	ACTGG	1 cut(s)	955
BseRI	GAGGAG	2 cut(s)	993, 1169
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	104, 490, 1567, 1732
BseYI	CCCAGC	1 cut(s)	1642
BshFI	GGCC	5 cut(s)	138, 1031, 1136, 1202, 1323
BshVI	ATCGAT	1 cut(s)	864
BsiHKAI	GWGCWC	3 cut(s)	360, 621, 843
BsiHKCI	CYCGRG	5 cut(s)	105, 635, 790, 1316, 1704
BsiSI	CCGG	8 cut(s)	89, 101, 396, 551, 696, 1028, 1185, 1687
BsiWI	CGTACG	1 cut(s)	561
BslFI	GGGAC	3 cut(s)	412, 571, 1277
BslI	CCNNNNNNNGG	5 cut(s)	396, 492, 595, 671, 701
BsmAI	GTCTC	4 cut(s)	323, 789, 1025, 1234
BsmBI	CGTCTC	2 cut(s)	789, 1234
BsmFI	GGGAC	3 cut(s)	412, 571, 1277
BsmI	GAATGC	3 cut(s)	286, 481, 904
BsnI	GGCC	5 cut(s)	138, 1031, 1136, 1202, 1323
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	5 cut(s)	105, 635, 790, 1316, 1704
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	5 cut(s)	140, 360, 621, 696, 843
Bsp1407I	TGTACA	1 cut(s)	1293
Bsp143I	GATC	9 cut(s)	46, 414, 514, 600, 819, 1101, 1411, 1664, 1683
BspACI	CCGC	9 cut(s)	98, 527, 623, 725, 912, 1073, 1099, 1190, 1348
BspANI	GGCC	5 cut(s)	138, 1031, 1136, 1202, 1323
BspCNI	CTCAG	3 cut(s)	34, 204, 1224
BspDI	ATCGAT	1 cut(s)	864
BspLI	GGNNCC	4 cut(s)	138, 139, 447, 549
BspMI	ACCTGC	1 cut(s)	1366
BspPI	GGATC	5 cut(s)	422, 509, 1109, 1672, 1678
BspQI	GCTCTTC	2 cut(s)	348, 1365
BspTNI	GGTCTC	1 cut(s)	323
BsrBI	CCGCTC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	710
BsrFI	RCCGGY	2 cut(s)	88, 100
BsrGI	TGTACA	1 cut(s)	1293
BsrI	ACTGG	1 cut(s)	955
BssAI	RCCGGY	2 cut(s)	88, 100
BssECI	CCNNGG	5 cut(s)	303, 322, 1043, 1185, 1317
BssMI	GATC	9 cut(s)	46, 414, 514, 600, 819, 1101, 1411, 1664, 1683
BssNI	GRCGYC	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	3 cut(s)	450, 1044, 1358
Bst4CI	ACNGT	3 cut(s)	166, 800, 1475
Bst6I	CTCTTC	5 cut(s)	234, 282, 348, 1365, 1394
BstACI	GRCGYC	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	1293
BstC8I	GCNNGC	5 cut(s)	90, 102, 128, 717, 1227
BstDEI	CTNAG	5 cut(s)	21, 191, 1232, 1551, 1616
BstF5I	GGATG	3 cut(s)	631, 1227, 1370
BstHHI	GCGC	2 cut(s)	126, 904
BstKTI	GATC	9 cut(s)	49, 417, 517, 603, 822, 1104, 1414, 1667, 1686
BstMAI	GTCTC	4 cut(s)	323, 789, 1025, 1234
BstMBI	GATC	9 cut(s)	46, 414, 514, 600, 819, 1101, 1411, 1664, 1683
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 202, 946, 1717
BstNI	CCWGG	3 cut(s)	450, 1044, 1358
BstNSI	RCATGY	1 cut(s)	1744
BstSCI	CCNGG	8 cut(s)	395, 448, 694, 1026, 1042, 1184, 1356, 1686
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	4 cut(s)	104, 490, 1567, 1732
BstV2I	GAAGAC	4 cut(s)	300, 654, 1340, 1404
BstX2I	RGATCY	3 cut(s)	819, 1101, 1411
BstXI	CCANNNNNNTGG	1 cut(s)	962
BstYI	RGATCY	3 cut(s)	819, 1101, 1411
Bsu15I	ATCGAT	1 cut(s)	864
BsuRI	GGCC	5 cut(s)	138, 1031, 1136, 1202, 1323
BsuTUI	ATCGAT	1 cut(s)	864
BtrI	CACGTC	1 cut(s)	1119
BtsCI	GGATG	3 cut(s)	631, 1227, 1370
BtsIMutI	CAGTG	1 cut(s)	1209
BveI	ACCTGC	1 cut(s)	1366
Cac8I	GCNNGC	5 cut(s)	90, 102, 128, 717, 1227
CfoI	GCGC	2 cut(s)	126, 904
Cfr10I	RCCGGY	2 cut(s)	88, 100
Cfr13I	GGNCC	4 cut(s)	136, 137, 436, 1321
ClaI	ATCGAT	1 cut(s)	864
CseI	GACGC	1 cut(s)	1251
Csp6I	GTAC	6 cut(s)	82, 562, 787, 895, 1180, 1294
CviAII	CATG	6 cut(s)	232, 418, 937, 1246, 1259, 1741
CviQI	GTAC	6 cut(s)	82, 562, 787, 895, 1180, 1294
DdeI	CTNAG	5 cut(s)	21, 191, 1232, 1551, 1616
DpnI	GATC	9 cut(s)	48, 416, 516, 602, 821, 1103, 1413, 1666, 1685
DpnII	GATC	9 cut(s)	46, 414, 514, 600, 819, 1101, 1411, 1664, 1683
EaeI	YGGCCR	1 cut(s)	1134
Eam1104I	CTCTTC	5 cut(s)	234, 282, 348, 1365, 1394
EarI	CTCTTC	5 cut(s)	234, 282, 348, 1365, 1394
EciI	GGCGGA	3 cut(s)	87, 1114, 1205
Ecl136II	GAGCTC	3 cut(s)	358, 619, 841
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	5 cut(s)	140, 360, 621, 696, 843
Eco31I	GGTCTC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	1084
Eco47I	GGWCC	1 cut(s)	436
Eco53kI	GAGCTC	3 cut(s)	358, 619, 841
Eco57I	CTGAAG	2 cut(s)	808, 1233
Eco88I	CYCGRG	5 cut(s)	105, 635, 790, 1316, 1704
EcoICRI	GAGCTC	3 cut(s)	358, 619, 841
EcoO109I	RGGNCCY	3 cut(s)	136, 137, 1321
EcoRI	GAATTC	1 cut(s)	733
EcoRII	CCWGG	3 cut(s)	448, 1042, 1356
EcoRV	GATATC	1 cut(s)	1084
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	5 cut(s)	140, 360, 621, 696, 843
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	2 cut(s)	789, 1234
FaeI	CATG	6 cut(s)	235, 421, 940, 1249, 1262, 1744
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	3 cut(s)	412, 571, 1277
FatI	CATG	6 cut(s)	231, 417, 936, 1245, 1258, 1740
FauI	CCCGC	4 cut(s)	630, 905, 1080, 1341
FauNDI	CATATG	1 cut(s)	1205
Fnu4HI	GCNGC	4 cut(s)	93, 479, 1556, 1721
FokI	GGATG	3 cut(s)	618, 1234, 1377
FriOI	GRGCYC	5 cut(s)	140, 360, 621, 696, 843
Fsp4HI	GCNGC	4 cut(s)	93, 479, 1556, 1721
FspAI	RTGCGCAY	1 cut(s)	903
FspBI	CTAG	6 cut(s)	206, 809, 1092, 1409, 1647, 1764
FspI	TGCGCA	1 cut(s)	903
GlaI	GCGC	2 cut(s)	125, 903
GluI	GCNGC	4 cut(s)	93, 479, 1556, 1721
GsaI	CCCAGC	1 cut(s)	1646
GsuI	CTGGAG	2 cut(s)	464, 962
HaeIII	GGCC	5 cut(s)	138, 1031, 1136, 1202, 1323
HapII	CCGG	8 cut(s)	89, 101, 396, 551, 696, 1028, 1185, 1687
HgaI	GACGC	1 cut(s)	1251
HhaI	GCGC	2 cut(s)	126, 904
Hin1I	GRCGYC	1 cut(s)	740
Hin1II	CATG	6 cut(s)	235, 421, 940, 1249, 1262, 1744
Hin6I	GCGC	2 cut(s)	124, 902
HinP1I	GCGC	2 cut(s)	124, 902
HincII	GTYRAC	2 cut(s)	430, 1147
HindII	GTYRAC	2 cut(s)	430, 1147
HpaII	CCGG	8 cut(s)	89, 101, 396, 551, 696, 1028, 1185, 1687
HphI	GGTGA	4 cut(s)	169, 178, 1003, 1174
Hpy166II	GTNNAC	2 cut(s)	430, 1147
Hpy188I	TCNGA	7 cut(s)	323, 669, 783, 804, 930, 1233, 1669
Hpy8I	GTNNAC	2 cut(s)	430, 1147
Hpy99I	CGWCG	4 cut(s)	368, 742, 1123, 1142
HpyCH4III	ACNGT	3 cut(s)	166, 800, 1475
HpyCH4IV	ACGT	5 cut(s)	339, 408, 459, 740, 1118
HpyCH4V	TGCA	6 cut(s)	186, 284, 878, 1209, 1499, 1744
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 202, 946, 1717
HpyF3I	CTNAG	5 cut(s)	21, 191, 1232, 1551, 1616
HpySE526I	ACGT	5 cut(s)	339, 408, 459, 740, 1118
Hsp92I	GRCGYC	1 cut(s)	740
Hsp92II	CATG	6 cut(s)	235, 421, 940, 1249, 1262, 1744
HspAI	GCGC	2 cut(s)	124, 902
KroI	GCCGGC	2 cut(s)	88, 100
KroNI	GCCGGC	2 cut(s)	90, 102
Kzo9I	GATC	9 cut(s)	46, 414, 514, 600, 819, 1101, 1411, 1664, 1683
LguI	GCTCTTC	2 cut(s)	348, 1365
LmnI	GCTCC	7 cut(s)	100, 445, 471, 553, 624, 916, 1156
Lsp1109I	GCAGC	4 cut(s)	104, 490, 1567, 1732
LweI	GCATC	3 cut(s)	865, 889, 1212
MaeI	CTAG	6 cut(s)	206, 809, 1092, 1409, 1647, 1764
MaeII	ACGT	5 cut(s)	339, 408, 459, 740, 1118
MaeIII	GTNAC	3 cut(s)	455, 1252, 1475
MalI	GATC	9 cut(s)	48, 416, 516, 602, 821, 1103, 1413, 1666, 1685
MbiI	CCGCTC	1 cut(s)	625
MboI	GATC	9 cut(s)	46, 414, 514, 600, 819, 1101, 1411, 1664, 1683
MfeI	CAATTG	2 cut(s)	378, 1724
MflI	RGATCY	3 cut(s)	819, 1101, 1411
MhlI	GDGCHC	5 cut(s)	140, 360, 621, 696, 843
MluCI	AATT	6 cut(s)	378, 733, 1504, 1578, 1651, 1724
MlyI	GAGTC	6 cut(s)	145, 178, 258, 566, 593, 1027
MmeI	TCCRAC	4 cut(s)	185, 561, 862, 1342
MroNI	GCCGGC	2 cut(s)	88, 100
MroXI	GAANNNNTTC	1 cut(s)	1311
MseI	TTAA	1 cut(s)	1768
MslI	CAYNNNNRTG	1 cut(s)	1433
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	8 cut(s)	89, 101, 396, 551, 696, 1028, 1185, 1687
MspR9I	CCNGG	8 cut(s)	397, 450, 696, 1028, 1044, 1186, 1358, 1688
MunI	CAATTG	2 cut(s)	378, 1724
Mva1269I	GAATGC	3 cut(s)	286, 481, 904
MvaI	CCWGG	3 cut(s)	450, 1044, 1358
MwoI	GCNNNNNNNGC	4 cut(s)	101, 202, 946, 1717
NaeI	GCCGGC	2 cut(s)	90, 102
NciI	CCSGG	5 cut(s)	397, 696, 1028, 1186, 1688
NdeI	CATATG	1 cut(s)	1205
NdeII	GATC	9 cut(s)	46, 414, 514, 600, 819, 1101, 1411, 1664, 1683
NgoMIV	GCCGGC	2 cut(s)	88, 100
NlaIII	CATG	6 cut(s)	235, 421, 940, 1249, 1262, 1744
NlaIV	GGNNCC	4 cut(s)	138, 139, 447, 549
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	455, 1252
NsbI	TGCGCA	1 cut(s)	903
NspI	RCATGY	1 cut(s)	1744
OliI	CACNNNNGTG	1 cut(s)	1433
PaeR7I	CTCGAG	2 cut(s)	105, 1704
PciSI	GCTCTTC	2 cut(s)	348, 1365
PcsI	WCGNNNNNNNCGW	3 cut(s)	743, 1127, 1398
PctI	GAATGC	3 cut(s)	286, 481, 904
PdiI	GCCGGC	2 cut(s)	90, 102
PdmI	GAANNNNTTC	1 cut(s)	1311
Pfl23II	CGTACG	1 cut(s)	561
PflFI	GACNNNGTC	1 cut(s)	1142
PfoI	TCCNGGA	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	94, 480, 1557, 1722
PleI	GAGTC	6 cut(s)	145, 177, 258, 565, 592, 1026
PpsI	GAGTC	6 cut(s)	145, 177, 258, 565, 592, 1026
Psp124BI	GAGCTC	3 cut(s)	360, 621, 843
Psp6I	CCWGG	3 cut(s)	448, 1042, 1356
PspFI	CCCAGC	1 cut(s)	1642
PspGI	CCWGG	3 cut(s)	448, 1042, 1356
PspLI	CGTACG	1 cut(s)	561
PspN4I	GGNNCC	4 cut(s)	138, 139, 447, 549
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	4 cut(s)	136, 137, 436, 1321
PspXI	VCTCGAGB	2 cut(s)	105, 1704
PsuI	RGATCY	3 cut(s)	819, 1101, 1411
PsyI	GACNNNGTC	1 cut(s)	1142
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	6 cut(s)	83, 563, 788, 896, 1181, 1295
RsaNI	GTAC	6 cut(s)	82, 562, 787, 895, 1180, 1294
RseI	CAYNNNNRTG	1 cut(s)	1433
SacI	GAGCTC	3 cut(s)	360, 621, 843
SapI	GCTCTTC	2 cut(s)	348, 1365
SaqAI	TTAA	1 cut(s)	1768
SatI	GCNGC	4 cut(s)	93, 479, 1556, 1721
Sau3AI	GATC	9 cut(s)	46, 414, 514, 600, 819, 1101, 1411, 1664, 1683
Sau96I	GGNCC	4 cut(s)	136, 137, 436, 1321
ScaI	AGTACT	2 cut(s)	788, 1181
SchI	GAGTC	6 cut(s)	145, 178, 258, 566, 593, 1027
ScrFI	CCNGG	8 cut(s)	397, 450, 696, 1028, 1044, 1186, 1358, 1688
SduI	GDGCHC	5 cut(s)	140, 360, 621, 696, 843
SfaNI	GCATC	3 cut(s)	865, 889, 1212
Sfr274I	CTCGAG	2 cut(s)	105, 1704
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	2 cut(s)	105, 1704
SmiMI	CAYNNNNRTG	1 cut(s)	1433
SmlI	CTYRAG	4 cut(s)	105, 754, 1415, 1704
SmoI	CTYRAG	4 cut(s)	105, 754, 1415, 1704
SpeI	ACTAGT	1 cut(s)	1763
Sse9I	AATT	6 cut(s)	378, 733, 1504, 1578, 1651, 1724
SsiI	CCGC	9 cut(s)	98, 527, 623, 725, 912, 1073, 1099, 1190, 1348
SspI	AATATT	1 cut(s)	1490
SspMI	CTAG	6 cut(s)	206, 809, 1092, 1409, 1647, 1764
SstI	GAGCTC	3 cut(s)	360, 621, 843
StyD4I	CCNGG	8 cut(s)	395, 448, 694, 1026, 1042, 1184, 1356, 1686
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	166, 800, 1475
TaiI	ACGT	5 cut(s)	342, 411, 462, 743, 1121
TaqII	GACCGA	1 cut(s)	1530
TasI	AATT	6 cut(s)	378, 733, 1504, 1578, 1651, 1724
TatI	WGTACW	3 cut(s)	786, 1179, 1293
Tru1I	TTAA	1 cut(s)	1768
Tru9I	TTAA	1 cut(s)	1768
TscAI	CASTG	1 cut(s)	1216
TseFI	GTSAC	2 cut(s)	455, 1252
TseI	GCWGC	4 cut(s)	92, 478, 1555, 1720
Tsp45I	GTSAC	2 cut(s)	455, 1252
TspDTI	ATGAA	9 cut(s)	522, 548, 660, 850, 882, 1097, 1262, 1643, 1769
TspGWI	ACGGA	2 cut(s)	475, 702
TspRI	CASTG	1 cut(s)	1216
Tth111I	GACNNNGTC	1 cut(s)	1142
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	3 cut(s)	733, 1578, 1651
XceI	RCATGY	1 cut(s)	1744
XhoI	CTCGAG	2 cut(s)	105, 1704
XmnI	GAANNNNTTC	1 cut(s)	1311
XspI	CTAG	6 cut(s)	206, 809, 1092, 1409, 1647, 1764
ZraI	GACGTC	1 cut(s)	741
ZrmI	AGTACT	2 cut(s)	788, 1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.