Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007065

Physical Location & Seq

Genomic Coordinates Reverse (-)

27315283 .. 27318937

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1179700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAGGGGGGAGAGAACAGTTGTCATCCATTGTTGAGAGGAGGATGGAGGGAAAGCAAATTCAGCCATGGTTTCTCTTCAGCTCAAATCCAATCATTGGCTGCCATATGTGAAGCTCTTTTACCTCCTCTCTCACCGGAGGACATCCCAGATGAGCACCACCCCCTTCATTCCTCCTCCTCCTCCTCCTCCTACACAGCTTCTACCTCTCAGCCTCCCATCCCAGATGAGGTAGCAGAATTGATGGTGAAGAGGAGTCTACCAGAAGTGGTGGGTGGAGTGAGGGTATTTCTGAAGATGCTGTCATTGAGATTAGGAACATTTTTGCTCTGTGGGAAATGTTGCTTTGACTGGAAATGGCCATTCATTCACAAATTCGCTGAAATGTCATTGGACAAAAGAGAACAAGTCCTCAAGAAATGGTCGAGGCAAAAGCTTGTCATCACAATCAGATTGATGTTCATGGTGGTCAAGATGTTGATGAGAATTCAAGAAACCCGGCATGGAAAGCGATTGGATACGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

176

Amino Acids

19.88

Weight (kDa)

9.06

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28570 AT4G28570
fragaria_vesca	FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21040
malus_domestica	MD05G1193200.v1.1 MD10G1179700.v1.1
prunus_persica	Prupe.8G219700_v2.0.a1
pyrus_communis	pycom05g18010
rosa_chinensis	RchiOBHm_Chr6g0287381
rosa_laevigata	RLG00000012493
rosa_multiflora	Rmu_sc0007029.1_g000024
rosa_roxburghii	Rroxscaffold_7G00181480
rosa_rugosa	Rorug06G0187800 Rorug06G0187900
rosa_samantha	Rh6AG299000 Rh6BG304600 Rh6CG305100 Rh6CG313100 Rh6DG296400
rosa_wichuraiana	Rw6G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	3 cut(s)	59, 374, 486
AcuI	CTGAAG	2 cut(s)	63, 314
AfiI	CCNNNNNNNGG	2 cut(s)	97, 229
AgsI	TTSAA	1 cut(s)	491
AluBI	AGCT	4 cut(s)	83, 116, 200, 436
AluI	AGCT	4 cut(s)	83, 116, 200, 436
Alw21I	GWGCWC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	3 cut(s)	59, 374, 486
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	126, 259
BalI	TGGCCA	1 cut(s)	361
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	3 cut(s)	39, 227, 238
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	499
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	499
BmsI	GCATC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 229
Bse1I	ACTGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	4 cut(s)	25, 50, 144, 219
BseLI	CCNNNNNNNGG	2 cut(s)	97, 229
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	8 cut(s)	54, 117, 166, 169, 172, 175, 178, 268
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	137, 499
BslI	CCNNNNNNNGG	2 cut(s)	97, 229
BsnI	GGCC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp19I	CCATGG	1 cut(s)	67
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	82, 245
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	25, 50, 144, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 508
BstSCI	CCNGG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	25, 50, 144, 219
CviAII	CATG	3 cut(s)	68, 463, 503
CviJI	RGCY	8 cut(s)	66, 83, 101, 116, 200, 214, 361, 436
CviKI_1	RGCY	8 cut(s)	66, 83, 101, 116, 200, 214, 361, 436
DdeI	CTNAG	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	82, 245
EarI	CTCTTC	2 cut(s)	82, 245
Eco130I	CCWWGG	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	63, 314
EcoRI	GAATTC	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	3 cut(s)	71, 466, 506
FaiI	YATR	5 cut(s)	69, 107, 109, 464, 504
FatI	CATG	3 cut(s)	67, 462, 502
FauNDI	CATATG	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	4 cut(s)	12, 57, 131, 206
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	2 cut(s)	137, 499
Hin1II	CATG	3 cut(s)	71, 466, 506
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	2 cut(s)	137, 499
HphI	GGTGA	2 cut(s)	126, 259
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	294, 452
Hpy188III	TCNNGA	3 cut(s)	415, 472, 491
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 508
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	71, 466, 506
LpnPI	CCDG	6 cut(s)	150, 162, 237, 276, 337, 512
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	288
MboII	GAAGA	3 cut(s)	69, 262, 307
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	5 cut(s)	59, 239, 374, 486, 523
MluNI	TGGCCA	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	265
Mox20I	TGGCCA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	361
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	2 cut(s)	137, 499
MspR9I	CCNGG	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	63, 508
NciI	CCSGG	1 cut(s)	499
NcoI	CCATGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	107
NlaIII	CATG	3 cut(s)	71, 466, 506
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
SatI	GCNGC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	499
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	7 cut(s)	85, 118, 127, 202, 209, 234, 438
SfaNI	GCATC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	5 cut(s)	59, 239, 374, 486, 523
StyD4I	CCNGG	1 cut(s)	497
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	425
TasI	AATT	5 cut(s)	59, 239, 374, 486, 523
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	158, 355, 451
Van91I	CCANNNNNTGG	1 cut(s)	97
XapI	RAATTY	3 cut(s)	59, 374, 486
XmiI	GTMKAC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.