Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007065

Physical Location & Seq

Genomic Coordinates Reverse (-)

21072747 .. 21074018

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGTTCTTCGCGAGTGGTCTGTGGATCGATAAGCTGATTCCACTTTATGCAAGCGAGGATTACCAATCTGCCATGGATATTGTGTGTAAGAGGATCGGTGTCACAGAGAGTTGCACCAAAGAAAATTTCCAAAATCAAATTCTGCGAAAAGGGTGCGAAAATCTTGGATTGAAAGTTGAATCAGTTCCAAGGAACTCATCAGCAGATCATTACTGTGGTTTTTGCAATTATGGTTGTCCAACAGGGGACAAGAAGGGGACTGATTCGACTTGGCTAGTCGATGCTGTGGAATGTGGTGCGGTGATTTTAACTGGATGCAAAGCTGAGAAGTTTATACTCAAGAAGGAAAATGATGGAGGTAGAAGAAAGCGATGCCTTGGGGTGCAAGCAACATCTTTGAGCAAGAACATAAAAAGGAAGCTGGAAATCGAGGCAAAAGTAACAATTTCAGCATGTGGGTCTCTCTTGACTCCTCCTCTAATGATCTCCAGTGGACTCAAGAATCGGAATATTGGCCGGAACCTCCACCTCCACCCTGTTCTGTTGTGTTGGGGATACTTTCCTCAACACGAATCAGAGTTCAAAGGAAAAAAATATGAGGGAGGGATCATCACTTCAATCCACAAAGTGGTTTCTGAGACCGCAAATGCACGCGCGATTATAGAGACTGCTGTGCTAGGGCCGGCATCATTTGCTACATTGTCTCCATGGATTTCAAGGCTTGACATGAAGGACAGGATGGAGAAGTATGCAAGAACAGCTAACCTGTTTGCATTGGTGAGAGACCACAGTTCGGGCGTGGTTAAGCGTGAGGGGAGGATCCACTACACATTAGACCAATTAGACAAAGAAAATATTCTAGCAGGGCTAAGGCAGGCTCTGAGGATCATGATTGCAGCAGGAGCTGTTGAAGTGGGGACATATCGAAACGACGGGCAGAGGATAAAATGCAAGGGGGTTAAGGAGGAGGACTTGGAGGAGTTTTTGGACACGGTTGTCACCTCCGCAGGGCCGAGCGCGAGGGAGGAGCTGTGGACAATTTACTCATCTGCTCATCAGATGGGGAGTTGCAGAATGGGGGCTACTGAGGAGGAAGGAGGAGTTGATGAAAATGGTGAGAGCTGGGAGGCAAAAGGGTTGTTTGTTTGCGATGCAAGTTTGCTTCCGACTGCAGTTGGTGTGAATCCAATGATCACCGTTGAATCCACTGCTTATTGCATTGCCAAGAAGATTGCACAATCTTTGGACAAGCAAAAATATATATCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

424

Amino Acids

46.54

Weight (kDa)

8.23

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_N	PF00732	13 - 180	3.8e-55	GMC oxidoreductase
GMC_oxred_C	PF05199	273 - 401	1.3e-20	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28570 AT4G28570
fragaria_vesca	FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21040
malus_domestica	MD05G1193200.v1.1 MD10G1179700.v1.1
prunus_persica	Prupe.8G219700_v2.0.a1
pyrus_communis	pycom05g18010
rosa_chinensis	RchiOBHm_Chr6g0287381
rosa_laevigata	RLG00000012493
rosa_multiflora	Rmu_sc0007029.1_g000024
rosa_roxburghii	Rroxscaffold_7G00181480
rosa_rugosa	Rorug06G0187800 Rorug06G0187900
rosa_samantha	Rh6AG299000 Rh6BG304600 Rh6CG305100 Rh6CG313100 Rh6DG296400
rosa_wichuraiana	Rw6G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	995
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccII	CGCG	4 cut(s)	11, 654, 656, 1019
AciI	CCGC	3 cut(s)	299, 642, 1005
AclWI	GGATC	6 cut(s)	32, 101, 614, 814, 827, 893
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	124, 138
AdeI	CACNNNGTG	1 cut(s)	628
AfiI	CCNNNNNNNGG	3 cut(s)	628, 793, 1008
AgsI	TTSAA	7 cut(s)	172, 179, 583, 618, 717, 911, 1202
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 123, 142, 155
AluBI	AGCT	7 cut(s)	34, 323, 421, 761, 905, 1030, 1122
AluI	AGCT	7 cut(s)	34, 323, 421, 761, 905, 1030, 1122
Alw26I	GTCTC	5 cut(s)	465, 632, 659, 708, 777
AlwI	GGATC	6 cut(s)	32, 101, 614, 814, 827, 893
AlwNI	CAGNNNCTG	2 cut(s)	880, 905
AoxI	GGCC	3 cut(s)	514, 680, 1010
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	2 cut(s)	124, 138
Asp700I	GAANNNNTTC	2 cut(s)	183, 855
AspLEI	GCGC	2 cut(s)	656, 1019
AspS9I	GGNCC	2 cut(s)	680, 1010
AsuHPI	GGTGA	5 cut(s)	313, 790, 991, 1127, 1186
BamHI	GGATCC	1 cut(s)	819
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	3 cut(s)	347, 733, 1054
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BciVI	GTATCC	1 cut(s)	548
BclI	TGATCA	1 cut(s)	1191
BcoDI	GTCTC	5 cut(s)	465, 632, 659, 708, 777
BfaI	CTAG	3 cut(s)	275, 677, 860
BfmI	CTRYAG	1 cut(s)	1170
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	1 cut(s)	897
BlsI	GCNGC	1 cut(s)	898
BmgT120I	GGNCC	2 cut(s)	680, 1010
BmiI	GGNNCC	2 cut(s)	521, 821
BmsI	GCATC	5 cut(s)	271, 305, 362, 695, 1141
BpmI	CTGGAG	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	869
BpuEI	CTTGAG	2 cut(s)	323, 482
Bsa29I	ATCGAT	1 cut(s)	27
BsaI	GGTCTC	3 cut(s)	465, 632, 777
BsaJI	CCNNGG	4 cut(s)	72, 188, 376, 707
BsaXI	ACNNNNNCTCC	4 cut(s)	688, 718, 1016, 1046
Bsc4I	CCNNNNNNNGG	3 cut(s)	628, 793, 1008
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	2 cut(s)	316, 489
Bse3DI	GCAATG	1 cut(s)	1218
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	72, 188, 376, 707
BseGI	GGATG	2 cut(s)	320, 744
BseLI	CCNNNNNNNGG	3 cut(s)	628, 793, 1008
BseMI	GCAATG	1 cut(s)	1218
BseMII	CTCAG	4 cut(s)	315, 627, 872, 1077
BseNI	ACTGG	2 cut(s)	316, 489
BseRI	GAGGAG	7 cut(s)	462, 465, 980, 992, 1040, 1103, 1113
BseXI	GCAGC	1 cut(s)	908
BseYI	CCCAGC	1 cut(s)	1122
Bsh1236I	CGCG	4 cut(s)	11, 654, 656, 1019
BshFI	GGCC	3 cut(s)	516, 682, 1012
BshVI	ATCGAT	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	517, 683
BslFI	GGGAC	3 cut(s)	260, 271, 931
BslI	CCNNNNNNNGG	3 cut(s)	628, 793, 1008
BsmAI	GTCTC	5 cut(s)	465, 632, 659, 708, 777
BsmFI	GGGAC	3 cut(s)	260, 271, 931
BsnI	GGCC	3 cut(s)	516, 682, 1012
Bso31I	GGTCTC	3 cut(s)	465, 632, 777
Bsp143I	GATC	8 cut(s)	24, 93, 205, 483, 606, 819, 885, 1191
Bsp19I	CCATGG	2 cut(s)	72, 707
Bsp68I	TCGCGA	1 cut(s)	11
BspACI	CCGC	3 cut(s)	299, 642, 1005
BspANI	GGCC	3 cut(s)	516, 682, 1012
BspCNI	CTCAG	4 cut(s)	316, 628, 873, 1078
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	4 cut(s)	11, 654, 656, 1019
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	2 cut(s)	521, 821
BspMAI	CTGCAG	1 cut(s)	1174
BspPI	GGATC	6 cut(s)	32, 101, 614, 814, 827, 893
BspTNI	GGTCTC	3 cut(s)	465, 632, 777
BsrDI	GCAATG	1 cut(s)	1218
BsrFI	RCCGGY	1 cut(s)	682
BsrI	ACTGG	2 cut(s)	316, 489
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	4 cut(s)	72, 188, 376, 707
BssMI	GATC	8 cut(s)	24, 93, 205, 483, 606, 819, 885, 1191
BssT1I	CCWWGG	4 cut(s)	72, 188, 376, 707
Bst4CI	ACNGT	4 cut(s)	215, 791, 994, 1198
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	5 cut(s)	52, 387, 652, 684, 876
BstDEI	CTNAG	5 cut(s)	324, 636, 869, 881, 1086
BstDSI	CCRYGG	2 cut(s)	72, 707
BstF5I	GGATG	2 cut(s)	320, 744
BstFNI	CGCG	4 cut(s)	11, 654, 656, 1019
BstHHI	GCGC	2 cut(s)	656, 1019
BstKTI	GATC	8 cut(s)	27, 96, 208, 486, 609, 822, 888, 1194
BstMAI	GTCTC	5 cut(s)	465, 632, 659, 708, 777
BstMBI	GATC	8 cut(s)	24, 93, 205, 483, 606, 819, 885, 1191
BstMWI	GCNNNNNNNGC	3 cut(s)	692, 758, 902
BstNSI	RCATGY	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	1170
BstUI	CGCG	4 cut(s)	11, 654, 656, 1019
BstV1I	GCAGC	1 cut(s)	908
BstX2I	RGATCY	1 cut(s)	819
BstYI	RGATCY	1 cut(s)	819
Bsu15I	ATCGAT	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	516, 682, 1012
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	2 cut(s)	72, 707
BtgZI	GCGATG	2 cut(s)	385, 1164
BtsCI	GGATG	2 cut(s)	320, 744
BtsI	GCAGTG	1 cut(s)	1206
BtsIMutI	CAGTG	2 cut(s)	496, 1206
BtuMI	TCGCGA	1 cut(s)	11
Cac8I	GCNNGC	5 cut(s)	52, 387, 652, 684, 876
CaiI	CAGNNNCTG	2 cut(s)	880, 905
CciI	TCATGA	1 cut(s)	888
CfoI	GCGC	2 cut(s)	656, 1019
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	2 cut(s)	680, 1010
ClaI	ATCGAT	1 cut(s)	27
CviAII	CATG	5 cut(s)	73, 453, 708, 727, 889
DdeI	CTNAG	5 cut(s)	324, 636, 869, 881, 1086
DpnI	GATC	8 cut(s)	26, 95, 207, 485, 608, 821, 887, 1193
DpnII	GATC	8 cut(s)	24, 93, 205, 483, 606, 819, 885, 1191
DraIII	CACNNNGTG	1 cut(s)	628
DrdI	GACNNNNNNGTC	1 cut(s)	995
DseDI	GACNNNNNNGTC	1 cut(s)	995
EaeI	YGGCCR	1 cut(s)	514
Eco130I	CCWWGG	4 cut(s)	72, 188, 376, 707
Eco31I	GGTCTC	3 cut(s)	465, 632, 777
EcoT14I	CCWWGG	4 cut(s)	72, 188, 376, 707
ErhI	CCWWGG	4 cut(s)	72, 188, 376, 707
FaeI	CATG	5 cut(s)	76, 456, 711, 730, 892
FaqI	GGGAC	3 cut(s)	260, 271, 931
FatI	CATG	5 cut(s)	72, 452, 707, 726, 888
FbaI	TGATCA	1 cut(s)	1191
Fnu4HI	GCNGC	1 cut(s)	897
FokI	GGATG	2 cut(s)	327, 751
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	3 cut(s)	275, 677, 860
GlaI	GCGC	2 cut(s)	655, 1018
GluI	GCNGC	1 cut(s)	897
GsaI	CCCAGC	1 cut(s)	1126
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	3 cut(s)	516, 682, 1012
HapII	CCGG	2 cut(s)	517, 683
HhaI	GCGC	2 cut(s)	656, 1019
Hin1II	CATG	5 cut(s)	76, 456, 711, 730, 892
Hin6I	GCGC	2 cut(s)	654, 1017
HinP1I	GCGC	2 cut(s)	654, 1017
HinfI	GANTC	9 cut(s)	37, 179, 263, 469, 495, 502, 572, 1183, 1202
HpaII	CCGG	2 cut(s)	517, 683
HphI	GGTGA	5 cut(s)	313, 790, 991, 1127, 1186
Hpy166II	GTNNAC	2 cut(s)	494, 1035
Hpy188I	TCNGA	6 cut(s)	507, 577, 637, 882, 1059, 1167
Hpy188III	TCNNGA	5 cut(s)	10, 340, 466, 499, 889
Hpy8I	GTNNAC	2 cut(s)	494, 1035
Hpy99I	CGWCG	1 cut(s)	935
HpyAV	CCTTC	4 cut(s)	247, 337, 724, 1088
HpyCH4III	ACNGT	4 cut(s)	215, 791, 994, 1198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	692, 758, 902
HpyF3I	CTNAG	5 cut(s)	324, 636, 869, 881, 1086
Hsp92II	CATG	5 cut(s)	76, 456, 711, 730, 892
HspAI	GCGC	2 cut(s)	654, 1017
KroI	GCCGGC	1 cut(s)	682
KroNI	GCCGGC	1 cut(s)	684
Ksp22I	TGATCA	1 cut(s)	1191
Kzo9I	GATC	8 cut(s)	24, 93, 205, 483, 606, 819, 885, 1191
LmnI	GCTCC	2 cut(s)	902, 1027
Lsp1109I	GCAGC	1 cut(s)	908
LweI	GCATC	5 cut(s)	271, 305, 362, 695, 1141
MaeI	CTAG	3 cut(s)	275, 677, 860
MaeIII	GTNAC	3 cut(s)	100, 439, 997
MalI	GATC	8 cut(s)	26, 95, 207, 485, 608, 821, 887, 1193
MboI	GATC	8 cut(s)	24, 93, 205, 483, 606, 819, 885, 1191
MboII	GAAGA	2 cut(s)	375, 1240
MflI	RGATCY	1 cut(s)	819
MluCI	AATT	6 cut(s)	124, 138, 226, 444, 839, 1038
MlyI	GAGTC	2 cut(s)	463, 489
MmeI	TCCRAC	2 cut(s)	263, 1190
MroNI	GCCGGC	1 cut(s)	682
MroXI	GAANNNNTTC	2 cut(s)	183, 855
MseI	TTAA	3 cut(s)	308, 804, 960
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	2 cut(s)	517, 683
MvnI	CGCG	4 cut(s)	11, 654, 656, 1019
MwoI	GCNNNNNNNGC	3 cut(s)	692, 758, 902
NaeI	GCCGGC	1 cut(s)	684
NcoI	CCATGG	2 cut(s)	72, 707
NdeII	GATC	8 cut(s)	24, 93, 205, 483, 606, 819, 885, 1191
NgoMIV	GCCGGC	1 cut(s)	682
NlaIII	CATG	5 cut(s)	76, 456, 711, 730, 892
NlaIV	GGNNCC	2 cut(s)	521, 821
NmeAIII	GCCGAG	1 cut(s)	1038
NmuCI	GTSAC	2 cut(s)	100, 997
NruI	TCGCGA	1 cut(s)	11
NspI	RCATGY	1 cut(s)	456
PagI	TCATGA	1 cut(s)	888
PdiI	GCCGGC	1 cut(s)	684
PdmI	GAANNNNTTC	2 cut(s)	183, 855
PfeI	GAWTC	7 cut(s)	37, 179, 263, 502, 572, 1183, 1202
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	1 cut(s)	898
PleI	GAGTC	2 cut(s)	463, 489
PpsI	GAGTC	2 cut(s)	463, 489
PspFI	CCCAGC	1 cut(s)	1122
PspN4I	GGNNCC	2 cut(s)	521, 821
PspPI	GGNCC	2 cut(s)	680, 1010
PstI	CTGCAG	1 cut(s)	1174
PstNI	CAGNNNCTG	2 cut(s)	880, 905
PsuI	RGATCY	1 cut(s)	819
RruI	TCGCGA	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	308, 804, 960
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	8 cut(s)	24, 93, 205, 483, 606, 819, 885, 1191
Sau96I	GGNCC	2 cut(s)	680, 1010
SchI	GAGTC	2 cut(s)	463, 489
SfaNI	GCATC	5 cut(s)	271, 305, 362, 695, 1141
SfcI	CTRYAG	1 cut(s)	1170
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	338, 497
SmoI	CTYRAG	2 cut(s)	338, 497
Sse9I	AATT	6 cut(s)	124, 138, 226, 444, 839, 1038
SsiI	CCGC	3 cut(s)	299, 642, 1005
SspI	AATATT	2 cut(s)	511, 856
SspMI	CTAG	3 cut(s)	275, 677, 860
StyI	CCWWGG	4 cut(s)	72, 188, 376, 707
TaaI	ACNGT	4 cut(s)	215, 791, 994, 1198
TaqI	TCGA	5 cut(s)	27, 266, 279, 429, 925
TasI	AATT	6 cut(s)	124, 138, 226, 444, 839, 1038
TfiI	GAWTC	7 cut(s)	37, 179, 263, 502, 572, 1183, 1202
Tru1I	TTAA	3 cut(s)	308, 804, 960
Tru9I	TTAA	3 cut(s)	308, 804, 960
TscAI	CASTG	2 cut(s)	496, 1213
TseFI	GTSAC	2 cut(s)	100, 997
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	2 cut(s)	100, 997
TspDTI	ATGAA	2 cut(s)	743, 1122
TspRI	CASTG	2 cut(s)	496, 1213
Van91I	CCANNNNNTGG	1 cut(s)	628
XapI	RAATTY	2 cut(s)	124, 138
XceI	RCATGY	1 cut(s)	456
XmnI	GAANNNNTTC	2 cut(s)	183, 855
XspI	CTAG	3 cut(s)	275, 677, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.