Rorug06G0187900

Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
29924233 .. 29924873
641 bp
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UTR
Exon/CDS
Intron
Rorug06G0187900.1

Sequence Viewer

Length: 213 bp
ATGAAGAAGGGATTGAAAGGTTTTCAACAGTCTTCAATTATGACAGTGAGGACTGGGAAGGAAGACATTAGAACCATAACCAAGGATGTCCACCCTGCGGCAATGATCCAAAGCTCGAGAAGCAACGTAAATGAGTTTTGGAGTGGGATCTTAGAGCTCGAGAAGCAAGTACCATGGATTACCTCCTTTCAGCATATGAGCTACCAAGTTTGA

Protein Analysis

70

Amino Acids

8.06

Weight (kDa)

9.6

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AclWI GGATC 2 cut(s) 100, 155
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 16, 26, 36
AluBI AGCT 3 cut(s) 114, 157, 201
AluI AGCT 3 cut(s) 114, 157, 201
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 2 cut(s) 100, 155
Ama87I CYCGRG 2 cut(s) 115, 158
AvaI CYCGRG 2 cut(s) 115, 158
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 24, 69
Bbv12I GWGCWC 1 cut(s) 159
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmeT110I CYCGRG 2 cut(s) 115, 158
BmrI ACTGGG 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 2 cut(s) 24, 69
BsaJI CCNNGG 2 cut(s) 81, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 81, 173
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 2 cut(s) 115, 158
BslI CCNNNNNNNGG 1 cut(s) 97
BsoBI CYCGRG 2 cut(s) 115, 158
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 105, 147
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 1 cut(s) 98
BspPI GGATC 2 cut(s) 100, 155
BsrDI GCAATG 1 cut(s) 108
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 81, 173
BssMI GATC 2 cut(s) 105, 147
BssT1I CCWWGG 2 cut(s) 81, 173
Bst4CI ACNGT 2 cut(s) 30, 46
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 2 cut(s) 108, 150
BstMBI GATC 2 cut(s) 105, 147
BstMWI GCNNNNNNNGC 2 cut(s) 120, 163
BstV2I GAAGAC 2 cut(s) 24, 69
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 51
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 174
CviJI RGCY 3 cut(s) 114, 157, 201
CviKI_1 RGCY 3 cut(s) 114, 157, 201
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 1 cut(s) 151
DpnI GATC 2 cut(s) 107, 149
DpnII GATC 2 cut(s) 105, 147
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 81, 173
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 2 cut(s) 115, 158
EcoICRI GAGCTC 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 81, 173
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 81, 173
FaeI CATG 1 cut(s) 177
FaiI YATR 5 cut(s) 41, 77, 175, 195, 197
FatI CATG 1 cut(s) 173
FauNDI CATATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 117, 160
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 30, 46
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 163
HpyF3I CTNAG 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 177
Kzo9I GATC 2 cut(s) 105, 147
LpnPI CCDG 2 cut(s) 39, 108
MaeII ACGT 1 cut(s) 126
MalI GATC 2 cut(s) 107, 149
MboI GATC 2 cut(s) 105, 147
MboII GAAGA 3 cut(s) 16, 24, 74
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 36
MnlI CCTC 2 cut(s) 42, 193
MwoI GCNNNNNNNGC 2 cut(s) 120, 163
NcoI CCATGG 1 cut(s) 173
NdeI CATATG 1 cut(s) 195
NdeII GATC 2 cut(s) 105, 147
NlaIII CATG 1 cut(s) 177
PaeR7I CTCGAG 2 cut(s) 115, 158
PkrI GCNGC 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 159
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SacI GAGCTC 1 cut(s) 159
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 105, 147
SduI GDGCHC 1 cut(s) 159
SetI ASST 6 cut(s) 22, 116, 129, 159, 185, 203
Sfr274I CTCGAG 2 cut(s) 115, 158
SgeI CNNG 9 cut(s) 66, 94, 107, 127, 129, 170, 172, 179, 186
SlaI CTCGAG 2 cut(s) 115, 158
SmlI CTYRAG 2 cut(s) 115, 158
SmoI CTYRAG 2 cut(s) 115, 158
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 98
SstI GAGCTC 1 cut(s) 159
StyI CCWWGG 2 cut(s) 81, 173
TaaI ACNGT 2 cut(s) 30, 46
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 116, 159
TasI AATT 1 cut(s) 36
TauI GCSGC 1 cut(s) 101
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 51
XhoI CTCGAG 2 cut(s) 115, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.