Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007065

Physical Location & Seq

Genomic Coordinates Forward (+)

29921223 .. 29923608

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0187800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGGCGGCGCTACGCTGGGCCTGTGACGAGAAGGTCCACGCCGCCAACATGCTCGCCAGCAAGCACTAAAGGGTTTCACTTTCCGCTTCCCAGATGCCCAAGTGTGATATCTGCCAGGGTGGTGATTGTGCTGAGAGCTTCAAGGAGTTCAGTGCCAATAACAAATAACATTAGGGACAACTTCAGAGTTATGCTTGAGATGAGTGTGGTTCTTATGTTTGGTGGGCAAATGAATATTGTCAAGGTGGGAAGAATGGCAGGCTGGGTTAGACGGGCATGGCAGTCCTCTGAAGATCAGCTCTCGTCTGTCACCAGTTTGGATGCTGTGGTCTTCGATCATTGCACATTTTCATCTTTAGGTTGTTTGACGGTGTTTGGGTTCACTGGGATTATTGGGGCTTTTGTTCTTCTGCCAATAAATTTTCTGGGGACCCAGCTGGAGGTGGATTTTTCGGATTTGCCTAACAAGTCTTTGGACTCGTTTAGTATTTCAAATATGGATGATGGCTCAAACTGGTACTTTCAAAATCAACTTCTCCTTATTATCTACAGATTGCAAAGAAACTTAATGTTGAGCAACACAATGGATCCAAAGGATCTTGTTAAACTCATTGTTAACTTTCATGTTACGTGGCTAACAATGGTATCTTCTAATTCATCTAATGTTGTTTTCTTGATAGAAAGCTGGGACTTGCAATGCTATTCTGGTTATAAACCATCTGAGTTGCAAGATTGTGTCCTTGCCCTTCATGACTTGCGGCTGAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

257

Amino Acids

28.94

Weight (kDa)

8.98

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	55 - 89	1.7e-08	Class-II DAHP synthetase family
RSN1_TM	PF13967	86 - 183	8.5e-12	Late exocytosis, associated with Golgi transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28570 AT4G28570
fragaria_vesca	FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21040
malus_domestica	MD05G1193200.v1.1 MD10G1179700.v1.1
prunus_persica	Prupe.8G219700_v2.0.a1
pyrus_communis	pycom05g18010
rosa_chinensis	RchiOBHm_Chr6g0287381
rosa_laevigata	RLG00000012493
rosa_multiflora	Rmu_sc0007029.1_g000024
rosa_roxburghii	Rroxscaffold_7G00181480
rosa_rugosa	Rorug06G0187800 Rorug06G0187900
rosa_samantha	Rh6AG299000 Rh6BG304600 Rh6CG305100 Rh6CG313100 Rh6DG296400
rosa_wichuraiana	Rw6G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AasI	GACNNNNNNGTC	1 cut(s)	34
AciI	CCGC	4 cut(s)	7, 44, 86, 760
AclWI	GGATC	3 cut(s)	584, 597, 606
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	169, 312
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	144, 495, 527
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	140, 301, 439, 687
AluI	AGCT	4 cut(s)	140, 301, 439, 687
AlwI	GGATC	3 cut(s)	584, 597, 606
AoxI	GGCC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	3 cut(s)	20, 36, 432
AsuHPI	GGTGA	2 cut(s)	136, 304
AvaII	GGWCC	2 cut(s)	36, 432
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BamHI	GGATCC	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	325
BccI	CCATC	2 cut(s)	500, 727
BciT130I	CCWGG	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	550
BfoI	RGCGCY	1 cut(s)	13
BisI	GCNGC	3 cut(s)	8, 44, 761
BlsI	GCNGC	3 cut(s)	9, 45, 762
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	36, 432
BmgT120I	GGNCC	3 cut(s)	20, 36, 432
BmiI	GGNNCC	3 cut(s)	433, 434, 591
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	86, 313
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	633
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	3 cut(s)	315, 391, 521
Bse3DI	GCAATG	2 cut(s)	340, 704
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	328, 508
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	2 cut(s)	340, 704
BseMII	CTCAG	2 cut(s)	125, 714
BseNI	ACTGG	3 cut(s)	315, 391, 521
BseYI	CCCAGC	4 cut(s)	17, 264, 435, 687
BshFI	GGCC	1 cut(s)	22
BslFI	GGGAC	3 cut(s)	191, 445, 704
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmFI	GGGAC	3 cut(s)	191, 445, 704
BsnI	GGCC	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	295, 337, 589, 598
BspACI	CCGC	4 cut(s)	7, 44, 86, 760
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	126, 715
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	3 cut(s)	433, 434, 591
BspPI	GGATC	3 cut(s)	584, 597, 606
BsrDI	GCAATG	2 cut(s)	340, 704
BsrI	ACTGG	3 cut(s)	315, 391, 521
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	4 cut(s)	295, 337, 589, 598
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	633
BstC8I	GCNNGC	4 cut(s)	56, 60, 64, 262
BstDEI	CTNAG	2 cut(s)	134, 723
BstF5I	GGATG	2 cut(s)	328, 508
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	4 cut(s)	298, 340, 592, 601
BstMBI	GATC	4 cut(s)	295, 337, 589, 598
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	589, 598
BstYI	RGATCY	2 cut(s)	589, 598
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	328, 508
BtsIMutI	CAGTG	2 cut(s)	159, 384
Cac8I	GCNNGC	4 cut(s)	56, 60, 64, 262
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	3 cut(s)	20, 36, 432
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	4 cut(s)	51, 279, 626, 752
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	134, 723
DpnI	GATC	4 cut(s)	297, 339, 591, 600
DpnII	GATC	4 cut(s)	295, 337, 589, 598
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	36, 432
Eco57I	CTGAAG	2 cut(s)	169, 312
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	111
FaeI	CATG	4 cut(s)	54, 282, 629, 755
FaiI	YATR	8 cut(s)	52, 194, 218, 280, 500, 627, 714, 753
FaqI	GGGAC	3 cut(s)	191, 445, 704
FatI	CATG	4 cut(s)	50, 278, 625, 751
Fnu4HI	GCNGC	3 cut(s)	8, 44, 761
FokI	GGATG	2 cut(s)	335, 515
Fsp4HI	GCNGC	3 cut(s)	8, 44, 761
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	3 cut(s)	8, 44, 761
GsaI	CCCAGC	4 cut(s)	21, 268, 439, 691
GsuI	CTGGAG	1 cut(s)	461
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	4 cut(s)	54, 282, 629, 755
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	1 cut(s)	479
HpaI	GTTAAC	1 cut(s)	619
HphI	GGTGA	2 cut(s)	136, 304
Hpy166II	GTNNAC	3 cut(s)	39, 384, 619
Hpy188I	TCNGA	4 cut(s)	188, 292, 457, 724
Hpy188III	TCNNGA	2 cut(s)	676, 752
Hpy8I	GTNNAC	3 cut(s)	39, 384, 619
HpyAV	CCTTC	2 cut(s)	27, 758
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	632
HpyCH4V	TGCA	4 cut(s)	345, 559, 697, 730
HpyF3I	CTNAG	2 cut(s)	134, 723
HpySE526I	ACGT	1 cut(s)	632
Hsp92II	CATG	4 cut(s)	54, 282, 629, 755
HspAI	GCGC	1 cut(s)	10
KflI	GGGWCCC	1 cut(s)	432
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	295, 337, 589, 598
LweI	GCATC	2 cut(s)	86, 313
MaeII	ACGT	1 cut(s)	632
MaeIII	GTNAC	3 cut(s)	25, 310, 628
MalI	GATC	4 cut(s)	297, 339, 591, 600
MboI	GATC	4 cut(s)	295, 337, 589, 598
MboII	GAAGA	5 cut(s)	264, 305, 325, 401, 642
MflI	RGATCY	2 cut(s)	589, 598
MluCI	AATT	2 cut(s)	421, 655
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	2 cut(s)	298, 436
MseI	TTAA	3 cut(s)	569, 606, 618
MspA1I	CMGCKG	1 cut(s)	439
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
NdeII	GATC	4 cut(s)	295, 337, 589, 598
NlaIII	CATG	4 cut(s)	54, 282, 629, 755
NlaIV	GGNNCC	3 cut(s)	433, 434, 591
NmuCI	GTSAC	2 cut(s)	25, 310
NspI	RCATGY	1 cut(s)	54
PagI	TCATGA	1 cut(s)	751
PkrI	GCNGC	3 cut(s)	9, 45, 762
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	633
PpuMI	RGGWCCY	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	4 cut(s)	17, 264, 435, 687
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	433, 434, 591
PspPI	GGNCC	3 cut(s)	20, 36, 432
PspPPI	RGGWCCY	1 cut(s)	432
PsuI	RGATCY	2 cut(s)	589, 598
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	569, 606, 618
SatI	GCNGC	3 cut(s)	8, 44, 761
Sau3AI	GATC	4 cut(s)	295, 337, 589, 598
Sau96I	GGNCC	3 cut(s)	20, 36, 432
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	9 cut(s)	38, 142, 249, 303, 364, 441, 447, 635, 689
SfaNI	GCATC	2 cut(s)	86, 313
SfcI	CTRYAG	1 cut(s)	550
SinI	GGWCC	2 cut(s)	36, 432
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	421, 655
SsiI	CCGC	4 cut(s)	7, 44, 86, 760
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	635
TaqI	TCGA	1 cut(s)	336
TasI	AATT	2 cut(s)	421, 655
TauI	GCSGC	3 cut(s)	10, 46, 763
Tru1I	TTAA	3 cut(s)	569, 606, 618
Tru9I	TTAA	3 cut(s)	569, 606, 618
TscAI	CASTG	2 cut(s)	159, 391
TseFI	GTSAC	2 cut(s)	25, 310
Tsp45I	GTSAC	2 cut(s)	25, 310
TspDTI	ATGAA	5 cut(s)	248, 342, 614, 648, 740
TspRI	CASTG	2 cut(s)	159, 391
VpaK11BI	GGWCC	2 cut(s)	36, 432
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.