Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007065

Physical Location & Seq

Genomic Coordinates Reverse (-)

49716489 .. 49720425

Gene Structure 3937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG296400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGACTAAAACCGACTCTACTCTCATTGAATCCCTCACCAAGAAAGGCATTGAAGTCACGGACAGCGCAGCTCATCCAAAGATCCACAAGATCAAATGTGATGTTGTCGTTGTTGGCTCTGGTTGTGGTGGAGGAGTTGCAGCTGCAGTTCTAGCACAGTCGGGCCAAAAAGTAGTTGTCCTTGAAAAAGGGAACTACTTTGTCCCCAAAGACTATTCTCTTCTAGAAGGTCCTTCCATGAATGAGCTATATGAATCTGGTGGAATCATGGCATCAAAAGATGGGAAGATGATGATATTGGCTGGCTCAACAGTTGGGGGAGGCTCTGCTGTGAACTGGTCTGCATCTATCAAAACCCCGAATTCTGTTCTTGAAGAGTGGTCTGTGGATCATAAGATTCCACTTTTCGGTAGCCCTGACTATCAATCTGCAATGGATGCTGTGTGTAAGAGGATTGGCGTTGTAGATAGTTGTACTGAGGAAAACATGCAGAATCAGATTTTAAGAAAAGGGTGTGAGAAACTTGGTTTGAAAGTTGATTCAGTCCCAAGAAACTCCTCAGCAGATCACTACTGTGGTTCTTGCAATTACGGTTGCCCAACTGGAGATAAACAAGGGACTGATAGAACTTGGCTAGTTGATGCTGTCAAATGTGGTGCTGTGATTTTAACAGGTTGCAAAGCTGAGAGATTCATAATCGAAAATGACTATCAAGGAGGTACAAGCAGGAAAAGATGCCTTGGAGTGCAAGCAATATCTTTGTGCAAGAACATAACAAAGAAACTTCAAATTGAGGCCAAGGTGACAATTTCAGCATGCGGGTCTCTCTTGACACCTCCTCTAATGATCTCCAGTGGACTCAAGAACCCAAACATTGGCAGAAACCTCCATCTTCACCCTGTTCTGCTAGCTTGGGGGTACTTCCCCGAACATTCATCAGAATTTAAAGGCAAAACTTTTGAGGGTGGAATCATCACTTCACTCCATAAGGTTGTTTCTGAAGACAACCCAAATGTCAGAGCCATTGTAGAAACTCCAGCACTAGGGCCTGCCTCATTTGCCACTTTAGTCCCATGGGTTTCGGGACTTGACATGAAGGACAGAATGGCCAAGTATGCAAGAACAGCTCACCTTTTTGCATTGGTCAGAGATCAGGGCTCAGGAGAGGTCAGGGCGGAGAACAGGATCCACTACAGATTGAACAGATCAGACAAAGAAAACATACAAGCTGGGCTTAGGCAGGCTTTGAGAATATTGATTGCTGCAGGGGCTGTTGAAGTGGGTACATACAGAAATGATGGGCAGAGAATTGTGTGCGAGGGGACTAAGAAGGAGGATTTGGAAGAGTTCTTGGACAGTGTAATCGCAGTAGGAGGACCGAGAACAAAAGGCGAGAACTGGACAATGTATTCTTCTGCACATCAGATGGGGAGTTGTAGAATGGGTGCTACTGAGAAAGAAGGAGGGGTTGATGAGAATGGTGAGAGTTGGGAGGCAAAGGGGTTGTTTGTGTGTGATGGAAGTGTGCTTCCAACAGCTGTTGGTGTCAATCCCATGATTACTATCCAATCCACAGCTTATTGCCTTTCCAAGAAGATTGCAAATTCATTGAAGAAGGAAAAGTTCATGGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

545

Amino Acids

58.66

Weight (kDa)

8.19

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_N	PF00732	80 - 301	9.2e-78	GMC oxidoreductase
GMC_oxred_C	PF05199	395 - 526	1.5e-21	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28570 AT4G28570
fragaria_vesca	FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21000 FvH4_2g21040
malus_domestica	MD05G1193200.v1.1 MD10G1179700.v1.1
prunus_persica	Prupe.8G219700_v2.0.a1
pyrus_communis	pycom05g18010
rosa_chinensis	RchiOBHm_Chr6g0287381
rosa_laevigata	RLG00000012493
rosa_multiflora	Rmu_sc0007029.1_g000024
rosa_roxburghii	Rroxscaffold_7G00181480
rosa_rugosa	Rorug06G0187800 Rorug06G0187900
rosa_samantha	Rh6AG299000 Rh6BG304600 Rh6CG305100 Rh6CG313100 Rh6DG296400
rosa_wichuraiana	Rw6G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	875
AciI	CCGC	2 cut(s)	819, 1175
AclWI	GGATC	4 cut(s)	76, 396, 1180, 1193
AcoI	YGGCCR	1 cut(s)	1107
AcsI	RAATTY	3 cut(s)	361, 941, 1603
AcuI	CTGAAG	1 cut(s)	1020
AfaI	GTAC	4 cut(s)	475, 721, 920, 1285
AfiI	CCNNNNNNNGG	3 cut(s)	407, 875, 1043
AgsI	TTSAA	9 cut(s)	29, 53, 185, 374, 532, 788, 1201, 1277, 1612
AjuI	GAANNNNNNNTTGG	2 cut(s)	1322, 1354
AleI	CACNNNNGTG	1 cut(s)	573
AluBI	AGCT	9 cut(s)	71, 143, 247, 683, 911, 1127, 1229, 1538, 1577
AluI	AGCT	9 cut(s)	71, 143, 247, 683, 911, 1127, 1229, 1538, 1577
Alw26I	GTCTC	1 cut(s)	828
AlwI	GGATC	4 cut(s)	76, 396, 1180, 1193
AlwNI	CAGNNNCTG	1 cut(s)	1271
AoxI	GGCC	4 cut(s)	163, 795, 1046, 1107
ApeKI	GCWGC	4 cut(s)	68, 140, 143, 1262
ApoI	RAATTY	3 cut(s)	361, 941, 1603
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	4 cut(s)	163, 230, 1046, 1376
AsuHPI	GGTGA	5 cut(s)	28, 814, 887, 1121, 1493
AsuNHI	GCTAGC	1 cut(s)	907
AvaII	GGWCC	2 cut(s)	230, 1376
BalI	TGGCCA	1 cut(s)	1109
BamHI	GGATCC	1 cut(s)	1185
BanII	GRGCYC	1 cut(s)	1160
BbsI	GAAGAC	1 cut(s)	1008
BbvCI	CCTCAGC	1 cut(s)	559
BbvI	GCAGC	4 cut(s)	80, 130, 152, 1249
BccI	CCATC	5 cut(s)	275, 897, 1292, 1420, 1511
BcoDI	GTCTC	1 cut(s)	828
BfaI	CTAG	5 cut(s)	152, 224, 635, 908, 1043
BfmI	CTRYAG	3 cut(s)	144, 1192, 1263
BisI	GCNGC	4 cut(s)	69, 141, 144, 1263
BlsI	GCNGC	4 cut(s)	70, 142, 145, 1264
Bme18I	GGWCC	2 cut(s)	230, 1376
BmgT120I	GGNCC	4 cut(s)	163, 230, 1046, 1376
BmiI	GGNNCC	1 cut(s)	1187
BmsI	GCATC	5 cut(s)	281, 353, 427, 631, 725
BmtI	GCTAGC	1 cut(s)	911
BpiI	GAAGAC	1 cut(s)	1008
BpmI	CTGGAG	3 cut(s)	624, 835, 1020
Bpu10I	CCTNAGC	3 cut(s)	559, 1159, 1235
BpuEI	CTTGAG	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	1562
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	3 cut(s)	739, 798, 1073
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 875, 1043
Bse1I	ACTGG	4 cut(s)	341, 607, 852, 1403
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	1562
BseDI	CCNNGG	3 cut(s)	739, 798, 1073
BseGI	GGATG	2 cut(s)	73, 442
BseJI	GATNNNNATC	1 cut(s)	1562
BseLI	CCNNNNNNNGG	3 cut(s)	407, 875, 1043
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	5 cut(s)	468, 573, 675, 1173, 1443
BseNI	ACTGG	4 cut(s)	341, 607, 852, 1403
BseRI	GAGGAG	3 cut(s)	147, 547, 828
BseXI	GCAGC	4 cut(s)	80, 130, 152, 1249
BseYI	CCCAGC	1 cut(s)	1229
BsgI	GTGCAG	1 cut(s)	1401
BshFI	GGCC	4 cut(s)	165, 797, 1048, 1109
BslFI	GGGAC	6 cut(s)	188, 530, 631, 1055, 1098, 1336
BslI	CCNNNNNNNGG	3 cut(s)	407, 875, 1043
BsmAI	GTCTC	1 cut(s)	828
BsmFI	GGGAC	6 cut(s)	188, 530, 631, 1055, 1098, 1336
BsnI	GGCC	4 cut(s)	165, 797, 1048, 1109
Bso31I	GGTCTC	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	1160
Bsp143I	GATC	8 cut(s)	81, 90, 388, 565, 846, 1150, 1185, 1205
Bsp19I	CCATGG	1 cut(s)	1073
BspACI	CCGC	2 cut(s)	819, 1175
BspANI	GGCC	4 cut(s)	165, 797, 1048, 1109
BspCNI	CTCAG	5 cut(s)	469, 572, 676, 1172, 1444
BspLI	GGNNCC	1 cut(s)	1187
BspMAI	CTGCAG	2 cut(s)	148, 1267
BspOI	GCTAGC	1 cut(s)	911
BspPI	GGATC	4 cut(s)	76, 396, 1180, 1193
BspTNI	GGTCTC	1 cut(s)	828
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	4 cut(s)	341, 607, 852, 1403
BssECI	CCNNGG	3 cut(s)	739, 798, 1073
BssMI	GATC	8 cut(s)	81, 90, 388, 565, 846, 1150, 1185, 1205
BssT1I	CCWWGG	3 cut(s)	739, 798, 1073
Bst4CI	ACNGT	5 cut(s)	159, 313, 575, 593, 1358
Bst6I	CTCTTC	3 cut(s)	225, 369, 1338
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	6 cut(s)	304, 750, 817, 909, 1050, 1242
BstDEI	CTNAG	7 cut(s)	477, 559, 684, 1159, 1235, 1326, 1452
BstDSI	CCRYGG	1 cut(s)	1073
BstF5I	GGATG	2 cut(s)	73, 442
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	8 cut(s)	84, 93, 391, 568, 849, 1153, 1188, 1208
BstMAI	GTCTC	1 cut(s)	828
BstMBI	GATC	8 cut(s)	81, 90, 388, 565, 846, 1150, 1185, 1205
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 437, 1058, 1115, 1124, 1268
BstNSI	RCATGY	2 cut(s)	490, 819
BstSFI	CTRYAG	3 cut(s)	144, 1192, 1263
BstV1I	GCAGC	4 cut(s)	80, 130, 152, 1249
BstV2I	GAAGAC	1 cut(s)	1008
BstX2I	RGATCY	2 cut(s)	81, 1185
BstYI	RGATCY	2 cut(s)	81, 1185
BsuRI	GGCC	4 cut(s)	165, 797, 1048, 1109
BtgI	CCRYGG	1 cut(s)	1073
BtsCI	GGATG	2 cut(s)	73, 442
BtsIMutI	CAGTG	2 cut(s)	859, 1363
Cac8I	GCNNGC	6 cut(s)	304, 750, 817, 909, 1050, 1242
CaiI	CAGNNNCTG	1 cut(s)	1271
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	163, 230, 1046, 1376
Csp6I	GTAC	4 cut(s)	474, 720, 919, 1284
CviAII	CATG	8 cut(s)	238, 268, 487, 816, 1074, 1093, 1555, 1627
CviQI	GTAC	4 cut(s)	474, 720, 919, 1284
DdeI	CTNAG	7 cut(s)	477, 559, 684, 1159, 1235, 1326, 1452
DpnI	GATC	8 cut(s)	83, 92, 390, 567, 848, 1152, 1187, 1207
DpnII	GATC	8 cut(s)	81, 90, 388, 565, 846, 1150, 1185, 1205
DraI	TTTAAA	1 cut(s)	946
EaeI	YGGCCR	1 cut(s)	1107
Eam1104I	CTCTTC	3 cut(s)	225, 369, 1338
EarI	CTCTTC	3 cut(s)	225, 369, 1338
EciI	GGCGGA	1 cut(s)	1190
Eco130I	CCWWGG	3 cut(s)	739, 798, 1073
Eco24I	GRGCYC	1 cut(s)	1160
Eco31I	GGTCTC	1 cut(s)	828
Eco47I	GGWCC	2 cut(s)	230, 1376
Eco57I	CTGAAG	1 cut(s)	1020
EcoO109I	RGGNCCY	2 cut(s)	230, 1046
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	3 cut(s)	739, 798, 1073
EcoT38I	GRGCYC	1 cut(s)	1160
ErhI	CCWWGG	3 cut(s)	739, 798, 1073
FaeI	CATG	8 cut(s)	241, 271, 490, 819, 1077, 1096, 1558, 1630
FalI	AAGNNNNNCTT	2 cut(s)	1218, 1250
FaqI	GGGAC	6 cut(s)	188, 530, 631, 1055, 1098, 1336
FatI	CATG	8 cut(s)	237, 267, 486, 815, 1073, 1092, 1554, 1626
FauI	CCCGC	1 cut(s)	812
Fnu4HI	GCNGC	4 cut(s)	69, 141, 144, 1263
FokI	GGATG	2 cut(s)	60, 449
FriOI	GRGCYC	1 cut(s)	1160
Fsp4HI	GCNGC	4 cut(s)	69, 141, 144, 1263
FspBI	CTAG	5 cut(s)	152, 224, 635, 908, 1043
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	69, 141, 144, 1263
GsaI	CCCAGC	1 cut(s)	1233
GsuI	CTGGAG	3 cut(s)	624, 835, 1020
HaeIII	GGCC	4 cut(s)	165, 797, 1048, 1109
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	8 cut(s)	241, 271, 490, 819, 1077, 1096, 1558, 1630
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HphI	GGTGA	5 cut(s)	28, 814, 887, 1121, 1493
Hpy166II	GTNNAC	2 cut(s)	334, 857
Hpy188I	TCNGA	7 cut(s)	498, 940, 1000, 1019, 1148, 1210, 1425
Hpy188III	TCNNGA	6 cut(s)	224, 371, 829, 862, 1083, 1161
Hpy8I	GTNNAC	2 cut(s)	334, 857
HpyAV	CCTTC	6 cut(s)	221, 243, 1090, 1324, 1454, 1609
HpyCH4III	ACNGT	5 cut(s)	159, 313, 575, 593, 1358
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 437, 1058, 1115, 1124, 1268
HpyF3I	CTNAG	7 cut(s)	477, 559, 684, 1159, 1235, 1326, 1452
Hsp92II	CATG	8 cut(s)	241, 271, 490, 819, 1077, 1096, 1558, 1630
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	8 cut(s)	81, 90, 388, 565, 846, 1150, 1185, 1205
Lsp1109I	GCAGC	4 cut(s)	80, 130, 152, 1249
LweI	GCATC	5 cut(s)	281, 353, 427, 631, 725
MaeI	CTAG	5 cut(s)	152, 224, 635, 908, 1043
MaeIII	GTNAC	2 cut(s)	55, 802
MalI	GATC	8 cut(s)	83, 92, 390, 567, 848, 1152, 1187, 1207
MboI	GATC	8 cut(s)	81, 90, 388, 565, 846, 1150, 1185, 1205
MboII	GAAGA	9 cut(s)	212, 298, 386, 884, 1013, 1355, 1404, 1606, 1624
MflI	RGATCY	2 cut(s)	81, 1185
MhlI	GDGCHC	1 cut(s)	1160
MlsI	TGGCCA	1 cut(s)	1109
MluCI	AATT	7 cut(s)	361, 586, 789, 807, 941, 1308, 1603
MluNI	TGGCCA	1 cut(s)	1109
MlyI	GAGTC	2 cut(s)	8, 852
MmeI	TCCRAC	1 cut(s)	1556
Mox20I	TGGCCA	1 cut(s)	1109
MscI	TGGCCA	1 cut(s)	1109
MseI	TTAA	3 cut(s)	503, 668, 945
MslI	CAYNNNNRTG	1 cut(s)	573
Msp20I	TGGCCA	1 cut(s)	1109
MspA1I	CMGCKG	2 cut(s)	143, 1538
MwoI	GCNNNNNNNGC	6 cut(s)	152, 437, 1058, 1115, 1124, 1268
NcoI	CCATGG	1 cut(s)	1073
NdeII	GATC	8 cut(s)	81, 90, 388, 565, 846, 1150, 1185, 1205
NheI	GCTAGC	1 cut(s)	907
NlaIII	CATG	8 cut(s)	241, 271, 490, 819, 1077, 1096, 1558, 1630
NlaIV	GGNNCC	1 cut(s)	1187
NmuCI	GTSAC	2 cut(s)	55, 802
NspI	RCATGY	2 cut(s)	490, 819
OliI	CACNNNNGTG	1 cut(s)	573
PaeI	GCATGC	1 cut(s)	819
PfeI	GAWTC	8 cut(s)	29, 254, 264, 397, 493, 539, 690, 969
PflMI	CCANNNNNTGG	1 cut(s)	875
PkrI	GCNGC	4 cut(s)	70, 142, 145, 1264
PleI	GAGTC	2 cut(s)	8, 852
PpsI	GAGTC	2 cut(s)	8, 852
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	1229
PspN4I	GGNNCC	1 cut(s)	1187
PspPI	GGNCC	4 cut(s)	163, 230, 1046, 1376
PspPPI	RGGWCCY	1 cut(s)	230
PstI	CTGCAG	2 cut(s)	148, 1267
PstNI	CAGNNNCTG	1 cut(s)	1271
PsuI	RGATCY	2 cut(s)	81, 1185
PvuII	CAGCTG	2 cut(s)	143, 1538
RsaI	GTAC	4 cut(s)	475, 721, 920, 1285
RsaNI	GTAC	4 cut(s)	474, 720, 919, 1284
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	3 cut(s)	503, 668, 945
SatI	GCNGC	4 cut(s)	69, 141, 144, 1263
Sau3AI	GATC	8 cut(s)	81, 90, 388, 565, 846, 1150, 1185, 1205
Sau96I	GGNCC	4 cut(s)	163, 230, 1046, 1376
SchI	GAGTC	2 cut(s)	8, 852
SduI	GDGCHC	1 cut(s)	1160
SfaNI	GCATC	5 cut(s)	281, 353, 427, 631, 725
SfcI	CTRYAG	3 cut(s)	144, 1192, 1263
SinI	GGWCC	2 cut(s)	230, 1376
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
SphI	GCATGC	1 cut(s)	819
Sse9I	AATT	7 cut(s)	361, 586, 789, 807, 941, 1308, 1603
SsiI	CCGC	2 cut(s)	819, 1175
SspI	AATATT	1 cut(s)	1254
SspMI	CTAG	5 cut(s)	152, 224, 635, 908, 1043
StyI	CCWWGG	3 cut(s)	739, 798, 1073
TaaI	ACNGT	5 cut(s)	159, 313, 575, 593, 1358
TaqI	TCGA	1 cut(s)	699
TaqII	GACCGA	1 cut(s)	1393
TasI	AATT	7 cut(s)	361, 586, 789, 807, 941, 1308, 1603
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	8 cut(s)	29, 254, 264, 397, 493, 539, 690, 969
Tru1I	TTAA	3 cut(s)	503, 668, 945
Tru9I	TTAA	3 cut(s)	503, 668, 945
TscAI	CASTG	2 cut(s)	859, 1363
TseFI	GTSAC	2 cut(s)	55, 802
TseI	GCWGC	4 cut(s)	68, 140, 143, 1262
Tsp45I	GTSAC	2 cut(s)	55, 802
TspDTI	ATGAA	7 cut(s)	254, 267, 682, 924, 1109, 1596, 1615
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	859, 1363
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	2 cut(s)	230, 1376
XapI	RAATTY	3 cut(s)	361, 941, 1603
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	2 cut(s)	490, 819
XspI	CTAG	5 cut(s)	152, 224, 635, 908, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.