MD10G1219400.v1.1

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
31703277 .. 31704440
1164 bp
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UTR
Exon/CDS
Intron
MD10G1219400.v1.1.491

Sequence Viewer

Length: 264 bp
ATGGAGGCGTTCGATAAGATAAAGGTGACCAACCCAATTGTCGAAATGGACGGAGATGAAATGACTCGGGTGTTCTCGACATGGATAAAAGACAAGCTTATTTTTCCCTTCCTGGAGTTGGATATCAAGTACTTCGACCTTGGGATTCTTAATCGCGATGCCACCAATGATAGAGTCACAGTTGAAAGTGCCGAAGCTACTCTTAAGTGTGCCCTATCATTCGCCCTTCACAGTTGCTTTGCTATACTCAACTACCCTTCATGA
Functional Annotation

Protein Analysis

88

Amino Acids

9.94

Weight (kDa)

4.64

Isoelectric Point (pI)

11.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017877)

Species Orthologous Gene IDs
malus_domestica MD10G1219400.v1.1
pyrus_communis pycom10g18550
rosa_chinensis RchiOBHm_Chr3g0471031 RchiOBHm_Chr3g0489021 RchiOBHm_Chr3g0492451
rosa_multiflora Rmu_sc0019359.1_g000001
rosa_roxburghii Rroxscaffold_3G00234280
rosa_rugosa Rorug05G0306800
rosa_samantha Rh3BG190100 Rh3CG180000
rosa_wichuraiana Rw1G029100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 118
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 97, 197
AluI AGCT 2 cut(s) 97, 197
Ama87I CYCGRG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 203
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 118
BseSI GKGCMC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 214
Bsp68I TCGCGA 1 cut(s) 156
BspFNI CGCG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 181, 233
BstAFI CTTAAG 1 cut(s) 203
BstEII GGTNACC 1 cut(s) 25
BstFNI CGCG 1 cut(s) 156
BstNI CCWGG 1 cut(s) 113
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 214
BstUI CGCG 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 171
BtuMI TCGCGA 1 cut(s) 156
CciI TCATGA 1 cut(s) 260
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 81, 261
CviJI RGCY 2 cut(s) 97, 197
CviKI_1 RGCY 2 cut(s) 97, 197
CviQI GTAC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 139
Eco32I GATATC 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 84, 264
FaiI YATR 3 cut(s) 82, 245, 262
FalI AAGNNNNNCTT 4 cut(s) 81, 113, 186, 218
FatI CATG 2 cut(s) 80, 260
GsuI CTGGAG 1 cut(s) 134
Hin1II CATG 2 cut(s) 84, 264
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 3 cut(s) 64, 145, 174
HphI GGTGA 1 cut(s) 37
Hpy188III TCNNGA 3 cut(s) 76, 155, 261
HpyAV CCTTC 2 cut(s) 118, 236
HpyCH4III ACNGT 2 cut(s) 181, 233
Hsp92II CATG 2 cut(s) 84, 264
LpnPI CCDG 2 cut(s) 98, 125
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 25, 175
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 36
MlyI GAGTC 2 cut(s) 58, 183
MmeI TCCRAC 1 cut(s) 99
MseI TTAA 2 cut(s) 150, 204
MspCI CTTAAG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 156
NlaIII CATG 2 cut(s) 84, 264
NmuCI GTSAC 2 cut(s) 25, 175
NruI TCGCGA 1 cut(s) 156
PagI TCATGA 1 cut(s) 260
PfeI GAWTC 1 cut(s) 145
PfoI TCCNGGA 1 cut(s) 111
PleI GAGTC 2 cut(s) 58, 182
PpsI GAGTC 2 cut(s) 58, 182
Psp6I CCWGG 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 111
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 150, 204
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 2 cut(s) 58, 183
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 214
SetI ASST 4 cut(s) 27, 99, 141, 199
SfaNI GCATC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 181, 233
TaqI TCGA 4 cut(s) 12, 42, 77, 135
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 150, 204
Tru9I TTAA 2 cut(s) 150, 204
TseFI GTSAC 2 cut(s) 25, 175
Tsp45I GTSAC 2 cut(s) 25, 175
TspDTI ATGAA 2 cut(s) 72, 249
TspGWI ACGGA 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.