Rw1G029100

2-aminoethanethiol dioxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017877
Physical Location & Seq
Forward (+)
56753450 .. 56754303
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029100.1

Sequence Viewer

Length: 363 bp
ATGTGTATATTCTGTTTTCCTACTTCCTCAGTCATTCCACTTCATGATCACCCTGGCATGACTGTTTTTAGCAAAGTTCTGTATGGTTCTTTGCATGTGAGAGCTTACAATTGGGTGGAGCCGTCCCACGAAAGCAAGGGATCAAATTACTTTCCAGGAGATGAGATGACTCGAATTTTCTGGAAATCAATCAAGGATAAGCTTATTCTCCCCTTTTTGGATTTGGACATTAAGTACTTTGACCTTGGTCTTCCTCACCATGATACCACTGATGATAAAGTTACCGTTGAAAGTGCAGAGGCTACTCTTCAGAGGATTAGAATGGGGCTGCTCCAGCTAGAAGTGTTCTGGTGTGGATCCTAA

Protein Analysis

120

Amino Acids

13.81

Weight (kDa)

5.79

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 1 - 49 2.5e-21 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017877)

Species Orthologous Gene IDs
malus_domestica MD10G1219400.v1.1
pyrus_communis pycom10g18550
rosa_chinensis RchiOBHm_Chr3g0471031 RchiOBHm_Chr3g0489021 RchiOBHm_Chr3g0492451
rosa_multiflora Rmu_sc0019359.1_g000001
rosa_roxburghii Rroxscaffold_3G00234280
rosa_rugosa Rorug05G0306800
rosa_samantha Rh3BG190100 Rh3CG180000
rosa_wichuraiana Rw1G029100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 148, 351
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 2 cut(s) 52, 154
AluBI AGCT 3 cut(s) 104, 202, 337
AluI AGCT 3 cut(s) 104, 202, 337
AlwI GGATC 2 cut(s) 148, 351
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 41, 248
BamHI GGATCC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 315
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 54, 156
BclI TGATCA 1 cut(s) 46
BfaI CTAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 2 cut(s) 54, 156
BmiI GGNNCC 2 cut(s) 120, 358
BmrFI CCNGG 2 cut(s) 54, 156
BoxI GACNNNNGTC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 52, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 54, 156
BseDI CCNNGG 2 cut(s) 52, 244
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 109
Bsp143I GATC 3 cut(s) 46, 140, 356
BspCNI CTCAG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 120, 358
BspPI GGATC 2 cut(s) 148, 351
BssECI CCNNGG 2 cut(s) 52, 244
BssMI GATC 3 cut(s) 46, 140, 356
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 54, 156
Bst4CI ACNGT 2 cut(s) 64, 286
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 28
BstKTI GATC 3 cut(s) 49, 143, 359
BstMBI GATC 3 cut(s) 46, 140, 356
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 2 cut(s) 54, 156
BstNSI RCATGY 1 cut(s) 98
BstPAI GACNNNNGTC 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 52, 154
BstV1I GCAGC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 267
CciI TCATGA 1 cut(s) 43
Csp6I GTAC 1 cut(s) 235
CviAII CATG 4 cut(s) 44, 58, 95, 260
CviJI RGCY 6 cut(s) 104, 121, 202, 302, 328, 337
CviKI_1 RGCY 6 cut(s) 104, 121, 202, 302, 328, 337
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 28
DpnI GATC 3 cut(s) 48, 142, 358
DpnII GATC 3 cut(s) 46, 140, 356
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 52, 154
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 47, 61, 98, 263
FaiI YATR 6 cut(s) 8, 45, 59, 84, 96, 261
FaqI GGGAC 1 cut(s) 109
FatI CATG 4 cut(s) 43, 57, 94, 259
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 1 cut(s) 338
GluI GCNGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 317
Hin1II CATG 4 cut(s) 47, 61, 98, 263
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 169
HphI GGTGA 2 cut(s) 41, 248
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 44, 181
HpyCH4III ACNGT 2 cut(s) 64, 286
HpyCH4V TGCA 2 cut(s) 94, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 4 cut(s) 47, 61, 98, 263
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 46, 140, 356
LmnI GCTCC 2 cut(s) 118, 336
LpnPI CCDG 7 cut(s) 39, 66, 141, 166, 168, 334, 347
Lsp1109I GCAGC 1 cut(s) 315
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 48, 142, 358
MboI GATC 3 cut(s) 46, 140, 356
MboII GAAGA 2 cut(s) 242, 299
MfeI CAATTG 1 cut(s) 109
MflI RGATCY 1 cut(s) 356
MluCI AATT 3 cut(s) 109, 145, 174
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 4 cut(s) 37, 264, 292, 306
MseI TTAA 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 54, 156
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 2 cut(s) 54, 156
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeII GATC 3 cut(s) 46, 140, 356
NlaIII CATG 4 cut(s) 47, 61, 98, 263
NlaIV GGNNCC 2 cut(s) 120, 358
NspI RCATGY 1 cut(s) 98
PagI TCATGA 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 1 cut(s) 330
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PshAI GACNNNNGTC 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 52, 154
PspGI CCWGG 2 cut(s) 52, 154
PspN4I GGNNCC 2 cut(s) 120, 358
PsuI RGATCY 1 cut(s) 356
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 3 cut(s) 46, 140, 356
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 54, 156
SetI ASST 4 cut(s) 106, 204, 246, 339
Sse9I AATT 3 cut(s) 109, 145, 174
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 52, 154
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 64, 286
TaqI TCGA 1 cut(s) 172
TasI AATT 3 cut(s) 109, 145, 174
TatI WGTACW 1 cut(s) 234
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 98
XspI CTAG 1 cut(s) 338
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.