MD10G1244100.v1.1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0020352
Physical Location & Seq
Forward (+)
33883747 .. 33883992
246 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1244100.v1.1.491

Sequence Viewer

Length: 246 bp
ATGAGTTTGACTCCTTATGTGTCAAAGTCAACAAGGTGTTCGTATCTGAATTATAGAGATGTTGACTTGGGGACAAATGGAAACGGCAATGCAAGCCGCTCAGAAGCTAGGGTTTGGGGAACAAAATACTTCAAGGGGAGTTTTGACAGATTGGTACAAGTGAGGAGTGCAGTAGATCCAGGAAACTTTTTAAAGGAAAATGCTAGAGATGTAATACTTTCATTTTGGTTTAGACCAGTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

82

Amino Acids

9.28

Weight (kDa)

9.72

Isoelectric Point (pI)

13.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BBE PF08031 14 - 65 2.9e-13 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020352)

Species Orthologous Gene IDs
malus_domestica MD04G1021800.v1.1 MD05G1266500.v1.1 MD10G1244100.v1.1
rosa_chinensis RchiOBHm_Chr5g0017941
rosa_multiflora Rmu_sc0003834.1_g000006
rosa_rugosa Rorug05G0038900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 99
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 170
AfaI GTAC 1 cut(s) 156
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AlwI GGATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 180
BfaI CTAG 2 cut(s) 108, 204
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BplI GAGNNNNNCTC 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 113
BspPI GGATC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 236
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 100
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 155
CviJI RGCY 2 cut(s) 96, 107
CviKI_1 RGCY 2 cut(s) 96, 107
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
DraI TTTAAA 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 178
FaiI YATR 2 cut(s) 18, 54
FaqI GGGAC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 2 cut(s) 108, 204
GluI GCNGC 1 cut(s) 97
HincII GTYRAC 2 cut(s) 30, 64
HindII GTYRAC 2 cut(s) 30, 64
HinfI GANTC 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 30, 64
Hpy188I TCNGA 2 cut(s) 48, 103
Hpy8I GTNNAC 2 cut(s) 30, 64
HpyCH4V TGCA 2 cut(s) 92, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 165, 192
MaeI CTAG 2 cut(s) 108, 204
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 99
MboI GATC 1 cut(s) 175
MflI RGATCY 1 cut(s) 175
MluCI AATT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 1 cut(s) 156
MseI TTAA 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 175
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 180
SetI ASST 2 cut(s) 38, 109
SgeI CNNG 9 cut(s) 45, 79, 105, 120, 145, 170, 191, 192, 216
Sse9I AATT 1 cut(s) 49
SsiI CCGC 1 cut(s) 97
SspMI CTAG 2 cut(s) 108, 204
StyD4I CCNGG 1 cut(s) 178
TasI AATT 1 cut(s) 49
TauI GCSGC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 210
XspI CTAG 2 cut(s) 108, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.