Rmu_sc0003834.1_g000006

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003834.1
Physical Location & Seq
Forward (+)
19940 .. 20320
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003834.1_g000006.1.cds

Sequence Viewer

Length: 381 bp
atgcagctgaagatagggaagatggcaatgcaatggaacccttatggtggaagaatgagcgagatttccgaatcggtgactccattcccacatagagcaggaaacttgtttttgattcattacgtcactgtctgggcgaacaaaaaggacacagagaagtacattgacttgttgaggaagttttatgaagcaatgactccatttgtgtccaaggaccctagagaggcctaccagaactacagggatctcgacattggtgctagtctggataaccagacttcctttcaagctgcttgggtttatgggaaaaagtatttcaaaaataactttgatatattggtacgtgtggaaaccaaggttgatcctcacaattttttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.87

Weight (kDa)

9.07

Isoelectric Point (pI)

25.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020352)

Species Orthologous Gene IDs
malus_domestica MD04G1021800.v1.1 MD05G1266500.v1.1 MD10G1244100.v1.1
rosa_chinensis RchiOBHm_Chr5g0017941
rosa_multiflora Rmu_sc0003834.1_g000006
rosa_rugosa Rorug05G0038900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 252, 356
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 2 cut(s) 161, 342
AfiI CCNNNNNNNGG 2 cut(s) 47, 223
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 2 cut(s) 287, 319
AluBI AGCT 2 cut(s) 7, 290
AluI AGCT 2 cut(s) 7, 290
AlwI GGATC 2 cut(s) 252, 356
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 4, 290
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 16, 277
BccI CCATC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BfaI CTAG 2 cut(s) 219, 261
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 2 cut(s) 5, 291
BlsI GCNGC 2 cut(s) 6, 292
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 38, 216
BsaAI YACGTR 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 210, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 223
Bse3DI GCAATG 3 cut(s) 33, 38, 198
BseDI CCNNGG 2 cut(s) 210, 354
BseLI CCNNNNNNNGG 2 cut(s) 47, 223
BseMI GCAATG 3 cut(s) 33, 38, 198
BseXI GCAGC 2 cut(s) 16, 277
BshFI GGCC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 47, 223
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 2 cut(s) 244, 361
BspANI GGCC 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 38, 216
BspPI GGATC 2 cut(s) 252, 356
BsrDI GCAATG 3 cut(s) 33, 38, 198
BssECI CCNNGG 2 cut(s) 210, 354
BssMI GATC 2 cut(s) 244, 361
BssT1I CCWWGG 2 cut(s) 210, 354
Bst4CI ACNGT 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 344
BstKTI GATC 2 cut(s) 247, 364
BstMBI GATC 2 cut(s) 244, 361
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 16, 277
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 160, 341
CviJI RGCY 3 cut(s) 7, 227, 290
CviKI_1 RGCY 3 cut(s) 7, 227, 290
CviQI GTAC 2 cut(s) 160, 341
DpnI GATC 2 cut(s) 246, 363
DpnII GATC 2 cut(s) 244, 361
Eco130I CCWWGG 2 cut(s) 210, 354
Eco147I AGGCCT 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 210, 354
ErhI CCWWGG 2 cut(s) 210, 354
FaiI YATR 5 cut(s) 45, 93, 186, 303, 335
Fnu4HI GCNGC 2 cut(s) 5, 291
Fsp4HI GCNGC 2 cut(s) 5, 291
FspBI CTAG 2 cut(s) 219, 261
GluI GCNGC 2 cut(s) 5, 291
HaeIII GGCC 1 cut(s) 227
HinfI GANTC 4 cut(s) 71, 79, 115, 196
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 248, 266
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 123, 343
HpyCH4V TGCA 2 cut(s) 4, 31
HpySE526I ACGT 2 cut(s) 123, 343
Kzo9I GATC 2 cut(s) 244, 361
LpnPI CCDG 6 cut(s) 84, 118, 226, 245, 251, 287
Lsp1109I GCAGC 2 cut(s) 16, 277
MaeI CTAG 2 cut(s) 219, 261
MaeII ACGT 2 cut(s) 123, 343
MaeIII GTNAC 2 cut(s) 76, 124
MalI GATC 2 cut(s) 246, 363
MboI GATC 2 cut(s) 244, 361
MboII GAAGA 3 cut(s) 22, 31, 63
MflI RGATCY 1 cut(s) 244
MluCI AATT 1 cut(s) 370
MlyI GAGTC 2 cut(s) 73, 190
MnlI CCTC 3 cut(s) 168, 217, 375
MspA1I CMGCKG 1 cut(s) 7
NdeII GATC 2 cut(s) 244, 361
NlaIV GGNNCC 2 cut(s) 38, 216
NmuCI GTSAC 2 cut(s) 76, 124
PceI AGGCCT 1 cut(s) 227
PfeI GAWTC 2 cut(s) 71, 115
PkrI GCNGC 2 cut(s) 6, 292
PleI GAGTC 2 cut(s) 73, 190
PpsI GAGTC 2 cut(s) 73, 190
Ppu21I YACGTR 1 cut(s) 344
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 38, 216
PspPI GGNCC 1 cut(s) 214
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 2 cut(s) 161, 342
RsaNI GTAC 2 cut(s) 160, 341
SatI GCNGC 2 cut(s) 5, 291
Sau3AI GATC 2 cut(s) 244, 361
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 2 cut(s) 73, 190
SetI ASST 5 cut(s) 9, 126, 292, 346, 360
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 214
Sse9I AATT 1 cut(s) 370
SseBI AGGCCT 1 cut(s) 227
SspMI CTAG 2 cut(s) 219, 261
StuI AGGCCT 1 cut(s) 227
StyI CCWWGG 2 cut(s) 210, 354
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 126, 346
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 370
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 2 cut(s) 71, 115
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 2 cut(s) 76, 124
TseI GCWGC 2 cut(s) 4, 290
Tsp45I GTSAC 2 cut(s) 76, 124
TspDTI ATGAA 2 cut(s) 107, 201
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 2 cut(s) 219, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.