Rorug05G0038900

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
3114996 .. 3120433
5438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0038900.1

Sequence Viewer

Length: 2079 bp
ATGGGAGATGTTGTGTGGCAGAGCTTTGATTATCCTAGCGACACAATCCTTCCAAGCATGTTGGTTGGATTTGATAGCAAATCTGGAAAGAGAAAGTTCTTGACTTCCTGGAAAGGTGATAATGATCCATCAGCAGGGATGTTCTTGGTTGGACTTGAATCACAGACGCCAACACAAGTGTTTATCTGGATTAATAATGGATCAACTCCCTATTGGAGAAGTGGTCCATGGGATAGAACAAAGTTCATTGGCCTACCAGAAATGGATCATCAATATCAAAGTGGATTTAAGCTTGACGATGATCCCATACTGGGGACAAAGTATTTCTCTTATACTTTACTTGACAATACTATCTCATATCTTGATATCTCTTCCAAAGGATTTTTGAACTTTATGCTTTCAGAAAATGGCTCCAACTGGGATCGTAACTGGGGGGCACCCGATAGCCCATGCGACAGATATGGAGTTTGTGGACCTTTTGGGGTTTGTACAACTTCTGAATCTCCAATGTGCAAGTGTTTGGAAAAGTTTGTACCCAAGTCAGATGAGGAATGGAGCAAACAAAACTGGACAGGAGGGTGTGTGAGGCGAACCAAATTGTTCTGTGACAGTAACACAAATAAGTCGGTCTCATCCAGAGGAAGCGATGGTTTTCAGAAGAGGGTAAGGTTGAAGGTGCCAGATTTTCATGAATATATCACATCTTTGGAATCTGAAGACTGCAAGATGTATTGCCTAAATAATTGTTCTTGCCTGGCGTATGCATTTGTTAATAATATAGGGTGTTTGGTCTGGTCCAAAGACCTTATTGATATGCAGGAGTTTTCCTCTGGAGGAACAGACATTTTCATTCGCCTAGCACATGCAGACCTAGGCGAAGGAAAGCAGATAAAATTAATTGTCAGCCTCACAGCTATTTGTTTTATCAGTATATTGGGTTCCATTGTGTTCGGTTGGCACAGGTTGCAAAGGAACAAAAAGGGAAAAAGGCAAGTAAAAACGAAGTACTTTGGATCGACTGGTACAACTGTGACCTCAACAGACCCTCTGCAAGAATATATAAGAGAACATGATCCATCGGAGCTATTCATCTATGATTTTGATTGCATATTAGTTGCTACAAACACTTTCAGTAACACAAACAAACTTGGTGAAGGAGGATTTGGCCCAGTTTATAAGGGTAAGCTGCAAGATGGGAATGAAATAGCAGTAAAAAGGTTATCTAGTAGCTCTGGGCAAGGCATAGAAGAGTTCAAGAATGAGATGCTGTTGATCTACAAACTCCAACATAAAAATCTTGTTAAAATCATGGGTTGCTGCGTTAAGGAGGATGAGAAGTTGCTAATTTATGAGTTCATGCCAAACAAAAGCTTGGATACTTTTCTATTCGATCCAACGAAAAGAGCACTGCTTGATTGGGCCAGACGCTTCAACATAATTCAGGGTGTCGCTAGAGGACTTCTTTATCTTCATCATGATTCCTGTTTGAAGGTAATACATAGAGATTTGAAGGTCAGTAATATCCTATTGGATGAGAAAATGAATCCAAAAATTTCAGACTTTGGATTAGCACGCATAGTTGAAGGGGCACAGAATCTAGTGAATACTCACAAGGTTGTGGGAACACTTGGCTACATATCTCCAGAGTATGCCATGGGAGGGATATTTTCCGAAAAATCTGATGTGTACAGCTTTGGGGTCTTATTATTGGAGATTATTAGCGGCAGGAAGAATACCAGCTTCTTTTACAATGAACAACAGCTAGGATTCCTACCTTATGCATGGCACTTATGGAGCGAAGGCAGGGGATTGGATTTGGCAGATGAAGCATTGACTAGTTCATATTCCTCTTCAGAATTGTTGAGATGCGTGCATATTGGGCTTCTTTGTGTACAAGACAATGCTGCAGATAGACCAACCATGGCAGATGTAGTTTTCATGCTAAGTAGTGTTACCGATGGTCCACTACCCAAGCGGCCTATATTTACTTTCCAAAGCCCAGTCTGTGATCCCCAACCACAGTATGTAAATGCTTTCTCTGCAAGTGAAGCTACCATGTCAATGATCGAAGGACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

692

Amino Acids

77.87

Weight (kDa)

6.02

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 3 - 38 1.4e-09 D-mannose binding lectin
S_locus_glycop PF00954 72 - 181 4.9e-27 S-locus glycoprotein domain
PAN_2 PF08276 213 - 272 5.9e-15 PAN-like domain
Pkinase PF00069 378 - 577 3e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 380 - 584 5.4e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1176
AccB1I GGYRCC 2 cut(s) 436, 676
AciI CCGC 2 cut(s) 1722, 1975
AclWI GGATC 9 cut(s) 119, 208, 273, 296, 429, 1021, 1067, 1385, 2003
AcsI RAATTY 1 cut(s) 1551
AcuI CTGAAG 2 cut(s) 735, 1836
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 6 cut(s) 490, 534, 1007, 1024, 1688, 1893
AfiI CCNNNNNNNGG 4 cut(s) 134, 311, 312, 1659
AgsI TTSAA 8 cut(s) 158, 388, 673, 1255, 1432, 1489, 1510, 1583
AhlI ACTAGT 1 cut(s) 1835
AjnI CCWGG 2 cut(s) 107, 753
AjuI GAANNNNNNNTTGG 2 cut(s) 1146, 1178
Alw21I GWGCWC 1 cut(s) 1408
Alw26I GTCTC 1 cut(s) 634
AlwI GGATC 9 cut(s) 119, 208, 273, 296, 429, 1021, 1067, 1385, 2003
AoxI GGCC 4 cut(s) 250, 1165, 1419, 1976
ApeKI GCWGC 3 cut(s) 1186, 1317, 1904
ApoI RAATTY 1 cut(s) 1551
AseI ATTAAT 2 cut(s) 192, 896
AspA2I CCTAGG 1 cut(s) 871
AspS9I GGNCC 6 cut(s) 224, 473, 795, 1166, 1419, 1961
AsuHPI GGTGA 2 cut(s) 128, 1163
AvaII GGWCC 4 cut(s) 224, 473, 795, 1961
AvrII CCTAGG 1 cut(s) 871
BaeGI GKGCMC 2 cut(s) 439, 1591
BaeI ACNNNNGTAYC 2 cut(s) 1014, 1047
BanI GGYRCC 2 cut(s) 436, 676
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 1408
BbvI GCAGC 3 cut(s) 1173, 1304, 1891
BccI CCATC 5 cut(s) 136, 641, 1084, 1187, 1952
BciT130I CCWGG 2 cut(s) 109, 755
BciVI GTATCC 1 cut(s) 1369
BcoDI GTCTC 1 cut(s) 634
BcuI ACTAGT 1 cut(s) 1835
BfaI CTAG 8 cut(s) 36, 857, 872, 1224, 1452, 1598, 1763, 1836
BfmI CTRYAG 1 cut(s) 1905
BfuI GTATCC 1 cut(s) 1369
BisI GCNGC 5 cut(s) 1187, 1318, 1723, 1905, 1976
BlnI CCTAGG 1 cut(s) 871
BlsI GCNGC 5 cut(s) 1188, 1319, 1724, 1906, 1977
BmcAI AGTACT 1 cut(s) 1007
Bme1390I CCNGG 2 cut(s) 109, 755
Bme18I GGWCC 4 cut(s) 224, 473, 795, 1961
BmgT120I GGNCC 6 cut(s) 224, 473, 795, 1166, 1419, 1961
BmiI GGNNCC 4 cut(s) 412, 438, 678, 940
BmrFI CCNGG 2 cut(s) 109, 755
BmrI ACTGGG 5 cut(s) 320, 427, 439, 1163, 1994
BmsI GCATC 2 cut(s) 1254, 1856
BmuI ACTGGG 5 cut(s) 320, 427, 439, 1163, 1994
BpiI GAAGAC 1 cut(s) 723
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpmI CTGGAG 2 cut(s) 852, 1626
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 4 cut(s) 227, 871, 1653, 1920
BsaXI ACNNNNNCTCC 5 cut(s) 27, 208, 238, 567, 597
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 311, 312, 1659
Bse1I ACTGG 7 cut(s) 315, 422, 434, 572, 1024, 1169, 2000
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 2 cut(s) 109, 755
BseDI CCNNGG 4 cut(s) 227, 871, 1653, 1920
BseGI GGATG 4 cut(s) 144, 632, 1336, 1537
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 4 cut(s) 134, 311, 312, 1659
BseNI ACTGG 7 cut(s) 315, 422, 434, 572, 1024, 1169, 2000
BseSI GKGCMC 2 cut(s) 439, 1591
BseXI GCAGC 3 cut(s) 1173, 1304, 1891
BshFI GGCC 4 cut(s) 252, 1167, 1421, 1978
BshNI GGYRCC 2 cut(s) 436, 676
BsiHKAI GWGCWC 1 cut(s) 1408
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 4 cut(s) 134, 311, 312, 1659
BsmAI GTCTC 1 cut(s) 634
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 4 cut(s) 252, 1167, 1421, 1978
Bso31I GGTCTC 1 cut(s) 634
Bsp1286I GDGCHC 3 cut(s) 439, 1408, 1591
Bsp1407I TGTACA 3 cut(s) 488, 1686, 1891
Bsp19I CCATGG 3 cut(s) 227, 1653, 1920
BspACI CCGC 2 cut(s) 1722, 1975
BspANI GGCC 4 cut(s) 252, 1167, 1421, 1978
BspHI TCATGA 2 cut(s) 688, 1474
BspLI GGNNCC 4 cut(s) 412, 438, 678, 940
BspMAI CTGCAG 1 cut(s) 1909
BspPI GGATC 9 cut(s) 119, 208, 273, 296, 429, 1021, 1067, 1385, 2003
BspT107I GGYRCC 2 cut(s) 436, 676
BspTNI GGTCTC 1 cut(s) 634
BsrGI TGTACA 3 cut(s) 488, 1686, 1891
BsrI ACTGG 7 cut(s) 315, 422, 434, 572, 1024, 1169, 2000
BssECI CCNNGG 4 cut(s) 227, 871, 1653, 1920
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 4 cut(s) 227, 871, 1653, 1920
Bst2UI CCWGG 2 cut(s) 109, 755
Bst4CI ACNGT 3 cut(s) 611, 1030, 2022
Bst6I CTCTTC 4 cut(s) 376, 653, 1242, 1855
BstACI GRCGYC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 964
BstAUI TGTACA 3 cut(s) 488, 1686, 1891
BstC8I GCNNGC 2 cut(s) 1573, 1871
BstDEI CTNAG 1 cut(s) 1943
BstDSI CCRYGG 3 cut(s) 227, 1653, 1920
BstF5I GGATG 4 cut(s) 144, 632, 1336, 1537
BstMAI GTCTC 1 cut(s) 634
BstMWI GCNNNNNNNGC 5 cut(s) 964, 1826, 1879, 2039, 2048
BstNI CCWGG 2 cut(s) 109, 755
BstNSI RCATGY 2 cut(s) 61, 866
BstSCI CCNGG 2 cut(s) 107, 753
BstSFI CTRYAG 1 cut(s) 1905
BstSLI GKGCMC 2 cut(s) 439, 1591
BstV1I GCAGC 3 cut(s) 1173, 1304, 1891
BstV2I GAAGAC 1 cut(s) 723
BsuI GTATCC 1 cut(s) 1369
BsuRI GGCC 4 cut(s) 252, 1167, 1421, 1978
BtgI CCRYGG 3 cut(s) 227, 1653, 1920
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 4 cut(s) 144, 632, 1336, 1537
BtsI GCAGTG 1 cut(s) 1406
BtsIMutI CAGTG 1 cut(s) 1406
Cac8I GCNNGC 2 cut(s) 1573, 1871
CciI TCATGA 2 cut(s) 688, 1474
Cfr13I GGNCC 6 cut(s) 224, 473, 795, 1166, 1419, 1961
CseI GACGC 2 cut(s) 175, 1434
Csp6I GTAC 6 cut(s) 489, 533, 1006, 1023, 1687, 1892
CviQI GTAC 6 cut(s) 489, 533, 1006, 1023, 1687, 1892
DdeI CTNAG 1 cut(s) 1943
Eam1104I CTCTTC 4 cut(s) 376, 653, 1242, 1855
EarI CTCTTC 4 cut(s) 376, 653, 1242, 1855
Eco130I CCWWGG 4 cut(s) 227, 871, 1653, 1920
Eco31I GGTCTC 1 cut(s) 634
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 4 cut(s) 224, 473, 795, 1961
Eco57I CTGAAG 2 cut(s) 735, 1836
EcoRII CCWGG 2 cut(s) 107, 753
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 4 cut(s) 227, 871, 1653, 1920
EcoT22I ATGCAT 2 cut(s) 766, 1783
ErhI CCWWGG 4 cut(s) 227, 871, 1653, 1920
FaqI GGGAC 1 cut(s) 328
Fnu4HI GCNGC 5 cut(s) 1187, 1318, 1723, 1905, 1976
FokI GGATG 4 cut(s) 151, 619, 1343, 1544
Fsp4HI GCNGC 5 cut(s) 1187, 1318, 1723, 1905, 1976
FspBI CTAG 8 cut(s) 36, 857, 872, 1224, 1452, 1598, 1763, 1836
GluI GCNGC 5 cut(s) 1187, 1318, 1723, 1905, 1976
GsuI CTGGAG 2 cut(s) 852, 1626
HaeIII GGCC 4 cut(s) 252, 1167, 1421, 1978
HgaI GACGC 2 cut(s) 175, 1434
Hin1I GRCGYC 1 cut(s) 167
HindIII AAGCTT 2 cut(s) 290, 1369
HinfI GANTC 7 cut(s) 158, 500, 710, 1478, 1543, 1594, 1767
HphI GGTGA 2 cut(s) 128, 1163
Hpy166II GTNNAC 4 cut(s) 473, 1687, 1892, 1964
Hpy8I GTNNAC 4 cut(s) 473, 1687, 1892, 1964
HpyAV CCTTC 9 cut(s) 59, 667, 872, 1148, 1483, 1504, 1577, 1793, 2063
HpyCH4III ACNGT 3 cut(s) 611, 1030, 2022
HpyF10VI GCNNNNNNNGC 5 cut(s) 964, 1826, 1879, 2039, 2048
HpyF3I CTNAG 1 cut(s) 1943
Hsp92I GRCGYC 1 cut(s) 167
LmnI GCTCC 4 cut(s) 416, 555, 1081, 1794
Lsp1109I GCAGC 3 cut(s) 1173, 1304, 1891
LweI GCATC 2 cut(s) 1254, 1856
MaeI CTAG 8 cut(s) 36, 857, 872, 1224, 1452, 1598, 1763, 1836
MaeIII GTNAC 6 cut(s) 425, 605, 611, 1030, 1133, 1951
MboII GAAGA 7 cut(s) 363, 670, 728, 1259, 1460, 1741, 1842
MhlI GDGCHC 3 cut(s) 439, 1408, 1591
MluCI AATT 8 cut(s) 596, 742, 893, 897, 1344, 1437, 1551, 1856
MmeI TCCRAC 5 cut(s) 46, 130, 438, 1309, 1418
Mph1103I ATGCAT 2 cut(s) 766, 1783
MseI TTAA 6 cut(s) 192, 288, 771, 896, 1302, 1323
MslI CAYNNNNRTG 1 cut(s) 2060
MspR9I CCNGG 2 cut(s) 109, 755
MvaI CCWGG 2 cut(s) 109, 755
MwoI GCNNNNNNNGC 5 cut(s) 964, 1826, 1879, 2039, 2048
NcoI CCATGG 3 cut(s) 227, 1653, 1920
NlaIV GGNNCC 4 cut(s) 412, 438, 678, 940
NmuCI GTSAC 2 cut(s) 605, 1030
NsiI ATGCAT 2 cut(s) 766, 1783
NspI RCATGY 2 cut(s) 61, 866
PagI TCATGA 2 cut(s) 688, 1474
PfeI GAWTC 7 cut(s) 158, 500, 710, 1478, 1543, 1594, 1767
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 5 cut(s) 1188, 1319, 1724, 1906, 1977
PshBI ATTAAT 2 cut(s) 192, 896
PsiI TTATAA 1 cut(s) 1176
Psp6I CCWGG 2 cut(s) 107, 753
PspGI CCWGG 2 cut(s) 107, 753
PspN4I GGNNCC 4 cut(s) 412, 438, 678, 940
PspPI GGNCC 6 cut(s) 224, 473, 795, 1166, 1419, 1961
PsrI GAACNNNNNNTAC 2 cut(s) 922, 954
PstI CTGCAG 1 cut(s) 1909
RsaI GTAC 6 cut(s) 490, 534, 1007, 1024, 1688, 1893
RsaNI GTAC 6 cut(s) 489, 533, 1006, 1023, 1687, 1892
RseI CAYNNNNRTG 1 cut(s) 2060
SaqAI TTAA 6 cut(s) 192, 288, 771, 896, 1302, 1323
SatI GCNGC 5 cut(s) 1187, 1318, 1723, 1905, 1976
Sau96I GGNCC 6 cut(s) 224, 473, 795, 1166, 1419, 1961
ScaI AGTACT 1 cut(s) 1007
ScrFI CCNGG 2 cut(s) 109, 755
SduI GDGCHC 3 cut(s) 439, 1408, 1591
SfaNI GCATC 2 cut(s) 1254, 1856
SfcI CTRYAG 1 cut(s) 1905
SinI GGWCC 4 cut(s) 224, 473, 795, 1961
SmiMI CAYNNNNRTG 1 cut(s) 2060
SpeI ACTAGT 1 cut(s) 1835
Sse9I AATT 8 cut(s) 596, 742, 893, 897, 1344, 1437, 1551, 1856
SsiI CCGC 2 cut(s) 1722, 1975
SspMI CTAG 8 cut(s) 36, 857, 872, 1224, 1452, 1598, 1763, 1836
StyD4I CCNGG 2 cut(s) 107, 753
StyI CCWWGG 4 cut(s) 227, 871, 1653, 1920
TaaI ACNGT 3 cut(s) 611, 1030, 2022
TaqI TCGA 3 cut(s) 1016, 1389, 2067
TaqII GACCGA 1 cut(s) 616
TasI AATT 8 cut(s) 596, 742, 893, 897, 1344, 1437, 1551, 1856
TatI WGTACW 4 cut(s) 488, 1005, 1686, 1891
TauI GCSGC 2 cut(s) 1725, 1978
TfiI GAWTC 7 cut(s) 158, 500, 710, 1478, 1543, 1594, 1767
Tru1I TTAA 6 cut(s) 192, 288, 771, 896, 1302, 1323
Tru9I TTAA 6 cut(s) 192, 288, 771, 896, 1302, 1323
TscAI CASTG 1 cut(s) 1413
TseFI GTSAC 2 cut(s) 605, 1030
TseI GCWGC 3 cut(s) 1186, 1317, 1904
Tsp45I GTSAC 2 cut(s) 605, 1030
TspRI CASTG 1 cut(s) 1413
VpaK11BI GGWCC 4 cut(s) 224, 473, 795, 1961
VspI ATTAAT 2 cut(s) 192, 896
XapI RAATTY 1 cut(s) 1551
XceI RCATGY 2 cut(s) 61, 866
XmaJI CCTAGG 1 cut(s) 871
XspI CTAG 8 cut(s) 36, 857, 872, 1224, 1452, 1598, 1763, 1836
ZrmI AGTACT 1 cut(s) 1007
Zsp2I ATGCAT 2 cut(s) 766, 1783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.