Berberine and berberine like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 563 |
| AccB1I | GGYRCC | 1 cut(s) | 308 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 845, 1249 |
| AccII | CGCG | 1 cut(s) | 1853 |
| AciI | CCGC | 8 cut(s) | 520, 737, 747, 867, 873, 1566, 1851, 1853 |
| AclI | AACGTT | 2 cut(s) | 810, 1086 |
| AclWI | GGATC | 3 cut(s) | 303, 1749, 1853 |
| AcoI | YGGCCR | 3 cut(s) | 555, 646, 1240 |
| AcuI | CTGAAG | 1 cut(s) | 1179 |
| AfaI | GTAC | 6 cut(s) | 212, 365, 799, 1658, 1811, 1839 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 92, 845, 991, 1249, 1300, 1301, 1538 |
| AflIII | ACRYGT | 2 cut(s) | 672, 702 |
| AgsI | TTSAA | 5 cut(s) | 338, 390, 491, 1084, 1412 |
| AjiI | CACGTC | 1 cut(s) | 675 |
| Alw26I | GTCTC | 4 cut(s) | 191, 262, 1637, 1708 |
| AlwI | GGATC | 3 cut(s) | 303, 1749, 1853 |
| Ama87I | CYCGRG | 1 cut(s) | 1148 |
| AoxI | GGCC | 7 cut(s) | 276, 555, 646, 856, 993, 1240, 1722 |
| ApeKI | GCWGC | 1 cut(s) | 1153 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 12, 1458 |
| AspS9I | GGNCC | 1 cut(s) | 993 |
| AsuHPI | GGTGA | 1 cut(s) | 1855 |
| AsuNHI | GCTAGC | 1 cut(s) | 1016 |
| AvaI | CYCGRG | 1 cut(s) | 1148 |
| BalI | TGGCCA | 3 cut(s) | 557, 648, 1242 |
| BanI | GGYRCC | 1 cut(s) | 308 |
| BauI | CACGAG | 2 cut(s) | 175, 1621 |
| BbsI | GAAGAC | 1 cut(s) | 987 |
| BbvI | GCAGC | 1 cut(s) | 1140 |
| BccI | CCATC | 5 cut(s) | 67, 401, 1004, 1072, 1329 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 290, 324, 1253, 1287, 1302, 1336, 1736, 1770 |
| BciVI | GTATCC | 1 cut(s) | 1901 |
| BcoDI | GTCTC | 4 cut(s) | 191, 262, 1637, 1708 |
| BfaI | CTAG | 5 cut(s) | 330, 1017, 1776, 1830, 1903 |
| BfmI | CTRYAG | 6 cut(s) | 169, 289, 1113, 1615, 1735, 1791 |
| BfuI | GTATCC | 1 cut(s) | 1901 |
| BglII | AGATCT | 2 cut(s) | 1117, 1162 |
| BisI | GCNGC | 1 cut(s) | 1154 |
| BlpI | GCTNAGC | 1 cut(s) | 905 |
| BlsI | GCNGC | 1 cut(s) | 1155 |
| BmcAI | AGTACT | 2 cut(s) | 365, 1811 |
| BmeT110I | CYCGRG | 1 cut(s) | 1148 |
| BmgBI | CACGTC | 1 cut(s) | 675 |
| BmgT120I | GGNCC | 1 cut(s) | 993 |
| BmiI | GGNNCC | 4 cut(s) | 9, 310, 1056, 1455 |
| BmsI | GCATC | 1 cut(s) | 916 |
| BmtI | GCTAGC | 1 cut(s) | 1020 |
| BpiI | GAAGAC | 1 cut(s) | 987 |
| BpmI | CTGGAG | 2 cut(s) | 783, 873 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 905 |
| BpuEI | CTTGAG | 1 cut(s) | 1031 |
| BsaBI | GATNNNNATC | 1 cut(s) | 729 |
| BsaI | GGTCTC | 2 cut(s) | 191, 1637 |
| BsaJI | CCNNGG | 2 cut(s) | 1206, 1851 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 92, 845, 991, 1249, 1300, 1301, 1538 |
| Bse1I | ACTGG | 2 cut(s) | 1058, 1243 |
| Bse3DI | GCAATG | 1 cut(s) | 1185 |
| Bse8I | GATNNNNATC | 1 cut(s) | 729 |
| BseDI | CCNNGG | 2 cut(s) | 1206, 1851 |
| BseGI | GGATG | 5 cut(s) | 78, 105, 931, 1064, 1551 |
| BseJI | GATNNNNATC | 1 cut(s) | 729 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 92, 845, 991, 1249, 1300, 1301, 1538 |
| BseMI | GCAATG | 1 cut(s) | 1185 |
| BseMII | CTCAG | 7 cut(s) | 105, 186, 1186, 1275, 1353, 1551, 1632 |
| BseNI | ACTGG | 2 cut(s) | 1058, 1243 |
| BseRI | GAGGAG | 1 cut(s) | 1017 |
| BseXI | GCAGC | 1 cut(s) | 1140 |
| BseYI | CCCAGC | 1 cut(s) | 827 |
| Bsh1236I | CGCG | 1 cut(s) | 1853 |
| BshFI | GGCC | 7 cut(s) | 278, 557, 648, 858, 995, 1242, 1724 |
| BshNI | GGYRCC | 1 cut(s) | 308 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1148 |
| BslFI | GGGAC | 3 cut(s) | 205, 1266, 1651 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 92, 845, 991, 1249, 1300, 1301, 1538 |
| BsmAI | GTCTC | 4 cut(s) | 191, 262, 1637, 1708 |
| BsmFI | GGGAC | 3 cut(s) | 205, 1266, 1651 |
| BsnI | GGCC | 7 cut(s) | 278, 557, 648, 858, 995, 1242, 1724 |
| Bso31I | GGTCTC | 2 cut(s) | 191, 1637 |
| BsoBI | CYCGRG | 1 cut(s) | 1148 |
| Bsp143I | GATC | 5 cut(s) | 295, 1117, 1162, 1741, 1858 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 905 |
| BspACI | CCGC | 8 cut(s) | 520, 737, 747, 867, 873, 1566, 1851, 1853 |
| BspANI | GGCC | 7 cut(s) | 278, 557, 648, 858, 995, 1242, 1724 |
| BspCNI | CTCAG | 7 cut(s) | 106, 187, 1185, 1276, 1354, 1552, 1633 |
| BspFNI | CGCG | 1 cut(s) | 1853 |
| BspLI | GGNNCC | 4 cut(s) | 9, 310, 1056, 1455 |
| BspOI | GCTAGC | 1 cut(s) | 1020 |
| BspPI | GGATC | 3 cut(s) | 303, 1749, 1853 |
| BspT107I | GGYRCC | 1 cut(s) | 308 |
| BspTNI | GGTCTC | 2 cut(s) | 191, 1637 |
| BsrDI | GCAATG | 1 cut(s) | 1185 |
| BsrI | ACTGG | 2 cut(s) | 1058, 1243 |
| BssECI | CCNNGG | 2 cut(s) | 1206, 1851 |
| BssMI | GATC | 5 cut(s) | 295, 1117, 1162, 1741, 1858 |
| BssSI | CACGAG | 2 cut(s) | 175, 1621 |
| BssT1I | CCWWGG | 1 cut(s) | 1206 |
| Bst2BI | CACGAG | 2 cut(s) | 175, 1621 |
| Bst6I | CTCTTC | 1 cut(s) | 1172 |
| BstC8I | GCNNGC | 1 cut(s) | 1018 |
| BstDEI | CTNAG | 9 cut(s) | 114, 195, 905, 1172, 1284, 1362, 1560, 1641, 1781 |
| BstDSI | CCRYGG | 1 cut(s) | 1851 |
| BstF5I | GGATG | 5 cut(s) | 78, 105, 931, 1064, 1551 |
| BstFNI | CGCG | 1 cut(s) | 1853 |
| BstKTI | GATC | 5 cut(s) | 298, 1120, 1165, 1744, 1861 |
| BstMAI | GTCTC | 4 cut(s) | 191, 262, 1637, 1708 |
| BstMBI | GATC | 5 cut(s) | 295, 1117, 1162, 1741, 1858 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 864 |
| BstNSI | RCATGY | 1 cut(s) | 706 |
| BstSFI | CTRYAG | 6 cut(s) | 169, 289, 1113, 1615, 1735, 1791 |
| BstUI | CGCG | 1 cut(s) | 1853 |
| BstV1I | GCAGC | 1 cut(s) | 1140 |
| BstV2I | GAAGAC | 1 cut(s) | 987 |
| BstX2I | RGATCY | 4 cut(s) | 295, 1117, 1162, 1741 |
| BstYI | RGATCY | 4 cut(s) | 295, 1117, 1162, 1741 |
| BsuI | GTATCC | 1 cut(s) | 1901 |
| BsuRI | GGCC | 7 cut(s) | 278, 557, 648, 858, 995, 1242, 1724 |
| BtgI | CCRYGG | 1 cut(s) | 1851 |
| BtrI | CACGTC | 1 cut(s) | 675 |
| BtsCI | GGATG | 5 cut(s) | 78, 105, 931, 1064, 1551 |
| BtsIMutI | CAGTG | 3 cut(s) | 201, 1347, 1647 |
| Cac8I | GCNNGC | 1 cut(s) | 1018 |
| Cfr13I | GGNCC | 1 cut(s) | 993 |
| Cfr42I | CCGCGG | 1 cut(s) | 1854 |
| CseI | GACGC | 1 cut(s) | 898 |
| Csp6I | GTAC | 6 cut(s) | 211, 364, 798, 1657, 1810, 1838 |
| CviQI | GTAC | 6 cut(s) | 211, 364, 798, 1657, 1810, 1838 |
| DdeI | CTNAG | 9 cut(s) | 114, 195, 905, 1172, 1284, 1362, 1560, 1641, 1781 |
| DpnI | GATC | 5 cut(s) | 297, 1119, 1164, 1743, 1860 |
| DpnII | GATC | 5 cut(s) | 295, 1117, 1162, 1741, 1858 |
| DraI | TTTAAA | 2 cut(s) | 370, 1816 |
| EaeI | YGGCCR | 3 cut(s) | 555, 646, 1240 |
| Eam1104I | CTCTTC | 1 cut(s) | 1172 |
| EarI | CTCTTC | 1 cut(s) | 1172 |
| Eco130I | CCWWGG | 1 cut(s) | 1206 |
| Eco147I | AGGCCT | 2 cut(s) | 278, 1724 |
| Eco31I | GGTCTC | 2 cut(s) | 191, 1637 |
| Eco32I | GATATC | 1 cut(s) | 682 |
| Eco57I | CTGAAG | 1 cut(s) | 1179 |
| Eco88I | CYCGRG | 1 cut(s) | 1148 |
| EcoRV | GATATC | 1 cut(s) | 682 |
| EcoT14I | CCWWGG | 1 cut(s) | 1206 |
| ErhI | CCWWGG | 1 cut(s) | 1206 |
| FaqI | GGGAC | 3 cut(s) | 205, 1266, 1651 |
| FauNDI | CATATG | 2 cut(s) | 253, 1699 |
| Fnu4HI | GCNGC | 1 cut(s) | 1154 |
| FokI | GGATG | 5 cut(s) | 85, 112, 938, 1051, 1558 |
| Fsp4HI | GCNGC | 1 cut(s) | 1154 |
| FspBI | CTAG | 5 cut(s) | 330, 1017, 1776, 1830, 1903 |
| GluI | GCNGC | 1 cut(s) | 1154 |
| GsaI | CCCAGC | 1 cut(s) | 831 |
| GsuI | CTGGAG | 2 cut(s) | 783, 873 |
| HaeIII | GGCC | 7 cut(s) | 278, 557, 648, 858, 995, 1242, 1724 |
| HgaI | GACGC | 1 cut(s) | 898 |
| HincII | GTYRAC | 1 cut(s) | 1281 |
| HindII | GTYRAC | 1 cut(s) | 1281 |
| HindIII | AAGCTT | 2 cut(s) | 33, 1479 |
| HphI | GGTGA | 1 cut(s) | 1855 |
| Hpy166II | GTNNAC | 5 cut(s) | 757, 814, 1126, 1281, 1307 |
| Hpy188I | TCNGA | 4 cut(s) | 679, 1001, 1025, 1175 |
| Hpy188III | TCNNGA | 9 cut(s) | 113, 299, 317, 698, 762, 1397, 1559, 1745, 1763 |
| Hpy8I | GTNNAC | 5 cut(s) | 757, 814, 1126, 1281, 1307 |
| Hpy99I | CGWCG | 1 cut(s) | 914 |
| HpyCH4IV | ACGT | 5 cut(s) | 213, 674, 810, 1086, 1659 |
| HpyCH4V | TGCA | 6 cut(s) | 122, 608, 625, 791, 1145, 1274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 864 |
| HpyF3I | CTNAG | 9 cut(s) | 114, 195, 905, 1172, 1284, 1362, 1560, 1641, 1781 |
| HpySE526I | ACGT | 5 cut(s) | 213, 674, 810, 1086, 1659 |
| KspI | CCGCGG | 1 cut(s) | 1854 |
| Kzo9I | GATC | 5 cut(s) | 295, 1117, 1162, 1741, 1858 |
| LmnI | GCTCC | 2 cut(s) | 764, 1013 |
| Lsp1109I | GCAGC | 1 cut(s) | 1140 |
| LweI | GCATC | 1 cut(s) | 916 |
| MaeI | CTAG | 5 cut(s) | 330, 1017, 1776, 1830, 1903 |
| MaeII | ACGT | 5 cut(s) | 213, 674, 810, 1086, 1659 |
| MaeIII | GTNAC | 4 cut(s) | 937, 1072, 1087, 1259 |
| MalI | GATC | 5 cut(s) | 297, 1119, 1164, 1743, 1860 |
| MboI | GATC | 5 cut(s) | 295, 1117, 1162, 1741, 1858 |
| MfeI | CAATTG | 2 cut(s) | 792, 1407 |
| MflI | RGATCY | 4 cut(s) | 295, 1117, 1162, 1741 |
| MlsI | TGGCCA | 3 cut(s) | 557, 648, 1242 |
| MluCI | AATT | 7 cut(s) | 348, 462, 792, 1298, 1407, 1822, 1867 |
| MluNI | TGGCCA | 3 cut(s) | 557, 648, 1242 |
| MlyI | GAGTC | 7 cut(s) | 125, 241, 274, 1035, 1571, 1687, 1720 |
| MmeI | TCCRAC | 1 cut(s) | 863 |
| Mox20I | TGGCCA | 3 cut(s) | 557, 648, 1242 |
| MroXI | GAANNNNTTC | 2 cut(s) | 12, 1458 |
| MscI | TGGCCA | 3 cut(s) | 557, 648, 1242 |
| MseI | TTAA | 8 cut(s) | 221, 369, 630, 708, 714, 729, 1667, 1815 |
| MslI | CAYNNNNRTG | 1 cut(s) | 438 |
| Msp20I | TGGCCA | 3 cut(s) | 557, 648, 1242 |
| MspA1I | CMGCKG | 2 cut(s) | 867, 1853 |
| MunI | CAATTG | 2 cut(s) | 792, 1407 |
| MvnI | CGCG | 1 cut(s) | 1853 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 864 |
| NdeI | CATATG | 2 cut(s) | 253, 1699 |
| NdeII | GATC | 5 cut(s) | 295, 1117, 1162, 1741, 1858 |
| NheI | GCTAGC | 1 cut(s) | 1016 |
| NlaIV | GGNNCC | 4 cut(s) | 9, 310, 1056, 1455 |
| NmuCI | GTSAC | 2 cut(s) | 1072, 1259 |
| NspI | RCATGY | 1 cut(s) | 706 |
| PceI | AGGCCT | 2 cut(s) | 278, 1724 |
| PciI | ACATGT | 1 cut(s) | 702 |
| PdmI | GAANNNNTTC | 2 cut(s) | 12, 1458 |
| PfeI | GAWTC | 5 cut(s) | 109, 578, 1366, 1555, 1759 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 845, 1249 |
| PkrI | GCNGC | 1 cut(s) | 1155 |
| PleI | GAGTC | 7 cut(s) | 124, 241, 273, 1034, 1570, 1687, 1719 |
| PpsI | GAGTC | 7 cut(s) | 124, 241, 273, 1034, 1570, 1687, 1719 |
| PscI | ACATGT | 1 cut(s) | 702 |
| PsiI | TTATAA | 1 cut(s) | 563 |
| Psp1406I | AACGTT | 2 cut(s) | 810, 1086 |
| PspFI | CCCAGC | 1 cut(s) | 827 |
| PspN4I | GGNNCC | 4 cut(s) | 9, 310, 1056, 1455 |
| PspPI | GGNCC | 1 cut(s) | 993 |
| PsuI | RGATCY | 4 cut(s) | 295, 1117, 1162, 1741 |
| RsaI | GTAC | 6 cut(s) | 212, 365, 799, 1658, 1811, 1839 |
| RsaNI | GTAC | 6 cut(s) | 211, 364, 798, 1657, 1810, 1838 |
| RseI | CAYNNNNRTG | 1 cut(s) | 438 |
| SacII | CCGCGG | 1 cut(s) | 1854 |
| SaqAI | TTAA | 8 cut(s) | 221, 369, 630, 708, 714, 729, 1667, 1815 |
| SatI | GCNGC | 1 cut(s) | 1154 |
| Sau3AI | GATC | 5 cut(s) | 295, 1117, 1162, 1741, 1858 |
| Sau96I | GGNCC | 1 cut(s) | 993 |
| ScaI | AGTACT | 2 cut(s) | 365, 1811 |
| SchI | GAGTC | 7 cut(s) | 125, 241, 274, 1035, 1571, 1687, 1720 |
| SfaNI | GCATC | 1 cut(s) | 916 |
| SfcI | CTRYAG | 6 cut(s) | 169, 289, 1113, 1615, 1735, 1791 |
| Sfr303I | CCGCGG | 1 cut(s) | 1854 |
| SgrBI | CCGCGG | 1 cut(s) | 1854 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 438 |
| SmlI | CTYRAG | 1 cut(s) | 1046 |
| SmoI | CTYRAG | 1 cut(s) | 1046 |
| Sse9I | AATT | 7 cut(s) | 348, 462, 792, 1298, 1407, 1822, 1867 |
| SseBI | AGGCCT | 2 cut(s) | 278, 1724 |
| SsiI | CCGC | 8 cut(s) | 520, 737, 747, 867, 873, 1566, 1851, 1853 |
| SspI | AATATT | 4 cut(s) | 67, 712, 1198, 1513 |
| SspMI | CTAG | 5 cut(s) | 330, 1017, 1776, 1830, 1903 |
| StuI | AGGCCT | 2 cut(s) | 278, 1724 |
| StyI | CCWWGG | 1 cut(s) | 1206 |
| TaiI | ACGT | 5 cut(s) | 216, 677, 813, 1089, 1662 |
| TaqI | TCGA | 5 cut(s) | 300, 699, 912, 1398, 1746 |
| TasI | AATT | 7 cut(s) | 348, 462, 792, 1298, 1407, 1822, 1867 |
| TatI | WGTACW | 2 cut(s) | 363, 1809 |
| TfiI | GAWTC | 5 cut(s) | 109, 578, 1366, 1555, 1759 |
| Tru1I | TTAA | 8 cut(s) | 221, 369, 630, 708, 714, 729, 1667, 1815 |
| Tru9I | TTAA | 8 cut(s) | 221, 369, 630, 708, 714, 729, 1667, 1815 |
| TscAI | CASTG | 3 cut(s) | 208, 1354, 1654 |
| TseFI | GTSAC | 2 cut(s) | 1072, 1259 |
| TseI | GCWGC | 1 cut(s) | 1153 |
| Tsp45I | GTSAC | 2 cut(s) | 1072, 1259 |
| TspGWI | ACGGA | 2 cut(s) | 626, 831 |
| TspRI | CASTG | 3 cut(s) | 208, 1354, 1654 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 845, 1249 |
| XceI | RCATGY | 1 cut(s) | 706 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 866 |
| XmnI | GAANNNNTTC | 2 cut(s) | 12, 1458 |
| XspI | CTAG | 5 cut(s) | 330, 1017, 1776, 1830, 1903 |
| ZrmI | AGTACT | 2 cut(s) | 365, 1811 |