FvH4_3g11090

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000956
Physical Location & Seq
Reverse (-)
6533454 .. 6535055
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11090.t1

Sequence Viewer

Length: 1602 bp
ATGAAGTTACCAAGTTATTCTGTAGCAGTAGTTCTCTGCATACTTTCAACCCTTTGGCTCTCAACTACTTCAAATCCTATTATCGAAAACTTCCTGAAATGCCTTCCAGACCAATCTCACTCCAACTATTCAATCTCTGAAGCCATTTACAGTCGACAAAATGCCACTTTTGAATCCGTTCTTTTGGCATACGTCAGAAACGGCAGATATCACACCCCTACAACTCCGAAACCGTTGGCTGTTGTGACAGCCAAGCACGAATCCCATGTACAAGCCACAGTGATCTGCGCAAAGCGGCATGGTTTGCAGATCAGAATCCGAAGTGGAGGCCACGATTACGAGGGTTTATCTTATGTGTCTCATGTCCCCTTTGTTGTTCTTGACATGTTTCATCTCCGAGCCATTCATGTTGATGTCGCTGATGAGAGTGCTTGGGTTGAGTCTGGGGCTACTGTTGGTGAACTTTACTATGAAATCGCAAAGAAAAGTAAAGTTCATGGATTTTCAGCTGCAGCTGGTCCAACTGTTGGTGTTGGTGGTCATTTTAGTGGCGGTGGCTATGGTGTCATGATGAGAAAATATGGGCTCACGGTGGATAACATTGAAGATGCTAAATTAATTAATTTGAATGGTTCAATTCTTGATAGAAAGTCTATGGGAGAAGATCTTTTTTGGGCCATTAGAGGTGGCGGTGGAGCAAGCTTTGGTGTCATTTTGTCATGGAAGATAAAGCTGCTCCCAGTGCCAGCGAAAGTGACTGTATTCAATATCGGAAGGACCCTTGAGCAAGGCGCTACAGATATTCTTTACCGGTGGCAACATGTCGCTCCTAAGCTACCTAAAGAAATCTTCATCAGAGCAATGCCTCAAGTTTTGAACACTAGCTTGGGTAACAAGGCAGTGGAAGTGTCATTCATTGGTTTCTTCTTGGGACAAAGGGATGAGCTTCTTACATTGATAAATGGGAGTCTTCCTGAACTGGGGTTGCAGAAAACAGATTGCATTGAAATGAGTTGGGTAGAATCTACGGTATTTTGGGCTGATTACCCAGTTGGAACTTCCATAGATGTTCTACTTGAAAGGCCTGAGGGGCCAACAGACAACTTCAAAGGTAGGTCTGACTTTGTGAAAGAACCAATTCCAAAAAGAGACATAGAATCCATATTGAAGGATCTACTTAAGATAGAGAACTTGTGGATGCAATGGAACCCCTACGGTGGAAGAATGAGTGAGATTTCCGAGTCGGAAACTCCCTACCCTCACAGAAGCGGAAACCTGTTCATGATTCAGTATCAGATAGCTTGGGAGGAAGAAGGGATTGGAGCCACCAACAAGTACCTTAGCTTATCTAGAAAATTTTACGAAATGATGACTCCATTTGTGTCCAAGCGACCAAGAGAGGCCTTCCAAAACTACAGGGATCTTGACATCGGGGCCAATTTGGATAATCAGACCATCTTCAAAATTGCTAGACTCTATGGAAGCAAATACTTTGAAGGTAATTTTGAAAGGCTGGTACGTGTTAAGACCGAGGTTGATCCCCAAAACTTTTTCAAGCACGAACAAAGTATCCCACCTCTTTCCCAAGACTATTTGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

534

Amino Acids

59.95

Weight (kDa)

6.72

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 78 - 214 3.8e-27 FAD binding domain
BBE PF08031 468 - 525 1.5e-17 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1595
Acc16I TGCGCA 1 cut(s) 289
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 1 cut(s) 154
AciI CCGC 4 cut(s) 295, 552, 690, 1269
AclWI GGATC 3 cut(s) 1179, 1428, 1532
AcsI RAATTY 1 cut(s) 1355
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 3 cut(s) 270, 1337, 1518
AfiI CCNNNNNNNGG 3 cut(s) 527, 980, 1217
AflII CTTAAG 1 cut(s) 1178
AflIII ACRYGT 3 cut(s) 384, 820, 1519
AgeI ACCGGT 1 cut(s) 810
AjuI GAANNNNNNNTTGG 4 cut(s) 869, 901, 1302, 1334
AloI GAACNNNNNNTCC 2 cut(s) 1554, 1586
AluBI AGCT 9 cut(s) 509, 515, 702, 733, 835, 885, 946, 1301, 1344
AluI AGCT 9 cut(s) 509, 515, 702, 733, 835, 885, 946, 1301, 1344
Alw26I GTCTC 2 cut(s) 363, 1143
AlwI GGATC 3 cut(s) 1179, 1428, 1532
AoxI GGCC 6 cut(s) 328, 675, 1082, 1091, 1401, 1434
ApeKI GCWGC 3 cut(s) 509, 512, 733
ApoI RAATTY 1 cut(s) 1355
AseI ATTAAT 2 cut(s) 617, 621
AsiGI ACCGGT 1 cut(s) 810
Asp700I GAANNNNTTC 2 cut(s) 177, 1137
AspLEI GCGC 2 cut(s) 290, 794
AspS9I GGNCC 5 cut(s) 518, 675, 777, 1091, 1434
AsuHPI GGTGA 1 cut(s) 470
AvaII GGWCC 2 cut(s) 518, 777
AxyI CCTNAGG 1 cut(s) 1086
BanII GRGCYC 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 962
BbvI GCAGC 3 cut(s) 496, 524, 720
BccI CCATC 1 cut(s) 1463
BceAI ACGGC 1 cut(s) 217
BciVI GTATCC 1 cut(s) 1580
BcoDI GTCTC 2 cut(s) 363, 1143
BfaI CTAG 4 cut(s) 882, 1350, 1470, 1600
BfmI CTRYAG 4 cut(s) 21, 510, 795, 1414
BfoI RGCGCY 1 cut(s) 795
BfrI CTTAAG 1 cut(s) 1178
BfuI GTATCC 1 cut(s) 1580
BglI GCCNNNNNGGC 1 cut(s) 1090
BglII AGATCT 1 cut(s) 664
BisI GCNGC 4 cut(s) 296, 510, 513, 734
BlsI GCNGC 4 cut(s) 297, 511, 514, 735
Bme18I GGWCC 2 cut(s) 518, 777
BmgT120I GGNCC 5 cut(s) 518, 675, 777, 1091, 1434
BmiI GGNNCC 5 cut(s) 779, 1092, 1208, 1324, 1435
BmrI ACTGGG 3 cut(s) 734, 989, 1043
BmsI GCATC 2 cut(s) 598, 1188
BmuI ACTGGG 3 cut(s) 734, 989, 1043
BpiI GAAGAC 1 cut(s) 962
Bpu10I CCTNAGC 2 cut(s) 831, 1340
BpuEI CTTGAG 2 cut(s) 803, 852
BsaAI YACGTR 1 cut(s) 1520
BsaBI GATNNNNATC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 1530
BsaWI WCCGGW 1 cut(s) 810
Bsc4I CCNNNNNNNGG 3 cut(s) 527, 980, 1217
Bse118I RCCGGY 1 cut(s) 810
Bse1I ACTGG 3 cut(s) 740, 984, 1049
Bse21I CCTNAGG 1 cut(s) 1086
Bse3DI GCAATG 2 cut(s) 867, 1208
Bse8I GATNNNNATC 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 1530
BseGI GGATG 2 cut(s) 946, 1203
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 3 cut(s) 527, 980, 1217
BseMI GCAATG 2 cut(s) 867, 1208
BseMII CTCAG 1 cut(s) 1077
BseNI ACTGG 3 cut(s) 740, 984, 1049
BseXI GCAGC 3 cut(s) 496, 524, 720
BshFI GGCC 6 cut(s) 330, 677, 1084, 1093, 1403, 1436
BshTI ACCGGT 1 cut(s) 810
BsiSI CCGG 1 cut(s) 811
BslFI GGGAC 2 cut(s) 350, 945
BslI CCNNNNNNNGG 3 cut(s) 527, 980, 1217
BsmAI GTCTC 2 cut(s) 363, 1143
BsmFI GGGAC 2 cut(s) 350, 945
BsnI GGCC 6 cut(s) 330, 677, 1084, 1093, 1403, 1436
Bsp1286I GDGCHC 1 cut(s) 588
Bsp1407I TGTACA 1 cut(s) 268
Bsp143I GATC 6 cut(s) 282, 309, 664, 1171, 1420, 1537
BspACI CCGC 4 cut(s) 295, 552, 690, 1269
BspANI GGCC 6 cut(s) 330, 677, 1084, 1093, 1403, 1436
BspCNI CTCAG 1 cut(s) 1078
BspHI TCATGA 2 cut(s) 567, 1281
BspLI GGNNCC 5 cut(s) 779, 1092, 1208, 1324, 1435
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 3 cut(s) 1179, 1428, 1532
BspTI CTTAAG 1 cut(s) 1178
BsrDI GCAATG 2 cut(s) 867, 1208
BsrFI RCCGGY 1 cut(s) 810
BsrGI TGTACA 1 cut(s) 268
BsrI ACTGG 3 cut(s) 740, 984, 1049
BssAI RCCGGY 1 cut(s) 810
BssECI CCNNGG 1 cut(s) 1530
BssMI GATC 6 cut(s) 282, 309, 664, 1171, 1420, 1537
Bst4CI ACNGT 9 cut(s) 152, 234, 280, 454, 526, 592, 760, 1030, 1217
BstAFI CTTAAG 1 cut(s) 1178
BstAPI GCANNNNNTGC 1 cut(s) 304
BstAUI TGTACA 1 cut(s) 268
BstBAI YACGTR 1 cut(s) 1520
BstC8I GCNNGC 2 cut(s) 700, 747
BstDEI CTNAG 3 cut(s) 831, 1086, 1340
BstF5I GGATG 2 cut(s) 946, 1203
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 2 cut(s) 290, 794
BstKTI GATC 6 cut(s) 285, 312, 667, 1174, 1423, 1540
BstMAI GTCTC 2 cut(s) 363, 1143
BstMBI GATC 6 cut(s) 282, 309, 664, 1171, 1420, 1537
BstMWI GCNNNNNNNGC 3 cut(s) 304, 742, 1090
BstNSI RCATGY 2 cut(s) 388, 824
BstSFI CTRYAG 4 cut(s) 21, 510, 795, 1414
BstV1I GCAGC 3 cut(s) 496, 524, 720
BstV2I GAAGAC 1 cut(s) 962
BstX2I RGATCY 3 cut(s) 664, 1171, 1420
BstYI RGATCY 3 cut(s) 664, 1171, 1420
Bsu36I CCTNAGG 1 cut(s) 1086
BsuI GTATCC 1 cut(s) 1580
BsuRI GGCC 6 cut(s) 330, 677, 1084, 1093, 1403, 1436
BtsCI GGATG 2 cut(s) 946, 1203
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 3 cut(s) 285, 747, 906
Cac8I GCNNGC 2 cut(s) 700, 747
CciI TCATGA 2 cut(s) 567, 1281
CfoI GCGC 2 cut(s) 290, 794
Cfr10I RCCGGY 1 cut(s) 810
Cfr13I GGNCC 5 cut(s) 518, 675, 777, 1091, 1434
Csp6I GTAC 3 cut(s) 269, 1336, 1517
CspAI ACCGGT 1 cut(s) 810
CviQI GTAC 3 cut(s) 269, 1336, 1517
DdeI CTNAG 3 cut(s) 831, 1086, 1340
DpnI GATC 6 cut(s) 284, 311, 666, 1173, 1422, 1539
DpnII GATC 6 cut(s) 282, 309, 664, 1171, 1420, 1537
DrdI GACNNNNNNGTC 1 cut(s) 1595
DseDI GACNNNNNNGTC 1 cut(s) 1595
Eco147I AGGCCT 2 cut(s) 1084, 1403
Eco24I GRGCYC 1 cut(s) 588
Eco32I GATATC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 518, 777
Eco57I CTGAAG 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 777
EcoRV GATATC 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 588
FaqI GGGAC 2 cut(s) 350, 945
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 4 cut(s) 296, 510, 513, 734
FokI GGATG 2 cut(s) 953, 1210
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 4 cut(s) 296, 510, 513, 734
FspBI CTAG 4 cut(s) 882, 1350, 1470, 1600
FspI TGCGCA 1 cut(s) 289
GlaI GCGC 2 cut(s) 289, 793
GluI GCNGC 4 cut(s) 296, 510, 513, 734
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 6 cut(s) 330, 677, 1084, 1093, 1403, 1436
HapII CCGG 1 cut(s) 811
HhaI GCGC 2 cut(s) 290, 794
Hin6I GCGC 2 cut(s) 288, 792
HinP1I GCGC 2 cut(s) 288, 792
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 700
HpaII CCGG 1 cut(s) 811
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 2 cut(s) 155, 461
Hpy188III TCNNGA 9 cut(s) 94, 107, 380, 568, 641, 974, 1282, 1350, 1424
Hpy8I GTNNAC 2 cut(s) 155, 461
HpyAV CCTTC 6 cut(s) 113, 768, 1162, 1307, 1414, 1490
HpyCH4III ACNGT 9 cut(s) 152, 234, 280, 454, 526, 592, 760, 1030, 1217
HpyCH4IV ACGT 2 cut(s) 192, 1519
HpyCH4V TGCA 6 cut(s) 39, 307, 512, 988, 1002, 1201
HpyF10VI GCNNNNNNNGC 3 cut(s) 304, 742, 1090
HpyF3I CTNAG 3 cut(s) 831, 1086, 1340
HpySE526I ACGT 2 cut(s) 192, 1519
HspAI GCGC 2 cut(s) 288, 792
Kzo9I GATC 6 cut(s) 282, 309, 664, 1171, 1420, 1537
LmnI GCTCC 4 cut(s) 695, 741, 832, 1322
Lsp1109I GCAGC 3 cut(s) 496, 524, 720
LweI GCATC 2 cut(s) 598, 1188
MaeI CTAG 4 cut(s) 882, 1350, 1470, 1600
MaeII ACGT 2 cut(s) 192, 1519
MaeIII GTNAC 4 cut(s) 6, 244, 754, 890
MalI GATC 6 cut(s) 284, 311, 666, 1173, 1422, 1539
MboI GATC 6 cut(s) 282, 309, 664, 1171, 1420, 1537
MboII GAAGA 9 cut(s) 617, 674, 736, 841, 916, 962, 1233, 1322, 1450
MflI RGATCY 3 cut(s) 664, 1171, 1420
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 9 cut(s) 614, 618, 622, 636, 1137, 1355, 1438, 1464, 1501
MlyI GAGTC 5 cut(s) 449, 976, 1250, 1366, 1467
MmeI TCCRAC 4 cut(s) 147, 545, 1033, 1224
MroXI GAANNNNTTC 2 cut(s) 177, 1137
MseI TTAA 4 cut(s) 617, 621, 1179, 1524
MslI CAYNNNNRTG 3 cut(s) 411, 546, 1007
MspA1I CMGCKG 2 cut(s) 509, 515
MspCI CTTAAG 1 cut(s) 1178
MspI CCGG 1 cut(s) 811
MwoI GCNNNNNNNGC 3 cut(s) 304, 742, 1090
NdeII GATC 6 cut(s) 282, 309, 664, 1171, 1420, 1537
NlaIV GGNNCC 5 cut(s) 779, 1092, 1208, 1324, 1435
NmuCI GTSAC 2 cut(s) 244, 754
NsbI TGCGCA 1 cut(s) 289
NspI RCATGY 2 cut(s) 388, 824
PacI TTAATTAA 1 cut(s) 621
PagI TCATGA 2 cut(s) 567, 1281
PceI AGGCCT 2 cut(s) 1084, 1403
PciI ACATGT 2 cut(s) 384, 820
PdmI GAANNNNTTC 2 cut(s) 177, 1137
PfeI GAWTC 6 cut(s) 173, 260, 315, 1022, 1157, 1285
PflMI CCANNNNNTGG 1 cut(s) 527
PinAI ACCGGT 1 cut(s) 810
PkrI GCNGC 4 cut(s) 297, 511, 514, 735
PleI GAGTC 5 cut(s) 448, 975, 1249, 1366, 1467
PpsI GAGTC 5 cut(s) 448, 975, 1249, 1366, 1467
Ppu21I YACGTR 1 cut(s) 1520
PpuMI RGGWCCY 1 cut(s) 777
PscI ACATGT 2 cut(s) 384, 820
PshBI ATTAAT 2 cut(s) 617, 621
Psp5II RGGWCCY 1 cut(s) 777
PspN4I GGNNCC 5 cut(s) 779, 1092, 1208, 1324, 1435
PspPI GGNCC 5 cut(s) 518, 675, 777, 1091, 1434
PspPPI RGGWCCY 1 cut(s) 777
PsrI GAACNNNNNNTAC 2 cut(s) 15, 47
PstI CTGCAG 1 cut(s) 514
PsuI RGATCY 3 cut(s) 664, 1171, 1420
PvuII CAGCTG 2 cut(s) 509, 515
RsaI GTAC 3 cut(s) 270, 1337, 1518
RsaNI GTAC 3 cut(s) 269, 1336, 1517
RseI CAYNNNNRTG 3 cut(s) 411, 546, 1007
SalI GTCGAC 1 cut(s) 153
SaqAI TTAA 4 cut(s) 617, 621, 1179, 1524
SatI GCNGC 4 cut(s) 296, 510, 513, 734
Sau3AI GATC 6 cut(s) 282, 309, 664, 1171, 1420, 1537
Sau96I GGNCC 5 cut(s) 518, 675, 777, 1091, 1434
SchI GAGTC 5 cut(s) 449, 976, 1250, 1366, 1467
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 2 cut(s) 598, 1188
SfcI CTRYAG 4 cut(s) 21, 510, 795, 1414
SfiI GGCCNNNNNGGCC 1 cut(s) 1090
SinI GGWCC 2 cut(s) 518, 777
SmiMI CAYNNNNRTG 3 cut(s) 411, 546, 1007
SmlI CTYRAG 3 cut(s) 782, 867, 1178
SmoI CTYRAG 3 cut(s) 782, 867, 1178
Sse9I AATT 9 cut(s) 614, 618, 622, 636, 1137, 1355, 1438, 1464, 1501
SseBI AGGCCT 2 cut(s) 1084, 1403
SsiI CCGC 4 cut(s) 295, 552, 690, 1269
SspMI CTAG 4 cut(s) 882, 1350, 1470, 1600
StuI AGGCCT 2 cut(s) 1084, 1403
TaaI ACNGT 9 cut(s) 152, 234, 280, 454, 526, 592, 760, 1030, 1217
TaiI ACGT 2 cut(s) 195, 1522
TaqI TCGA 2 cut(s) 84, 154
TaqII GACCGA 1 cut(s) 1544
TasI AATT 9 cut(s) 614, 618, 622, 636, 1137, 1355, 1438, 1464, 1501
TatI WGTACW 1 cut(s) 268
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 6 cut(s) 173, 260, 315, 1022, 1157, 1285
Tru1I TTAA 4 cut(s) 617, 621, 1179, 1524
Tru9I TTAA 4 cut(s) 617, 621, 1179, 1524
TscAI CASTG 3 cut(s) 285, 747, 906
TseFI GTSAC 2 cut(s) 244, 754
TseI GCWGC 3 cut(s) 509, 512, 733
Tsp45I GTSAC 2 cut(s) 244, 754
TspDTI ATGAA 8 cut(s) 17, 380, 395, 485, 486, 841, 904, 1270
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 3 cut(s) 285, 747, 906
Van91I CCANNNNNTGG 1 cut(s) 527
Vha464I CTTAAG 1 cut(s) 1178
VpaK11BI GGWCC 2 cut(s) 518, 777
VspI ATTAAT 2 cut(s) 617, 621
XapI RAATTY 1 cut(s) 1355
XbaI TCTAGA 1 cut(s) 1349
XceI RCATGY 2 cut(s) 388, 824
XmiI GTMKAC 1 cut(s) 154
XmnI GAANNNNTTC 2 cut(s) 177, 1137
XspI CTAG 4 cut(s) 882, 1350, 1470, 1600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.