Rmu_sc0011118.1_g000003

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011118.1
OG0000956
Physical Location & Seq
Forward (+)
16782 .. 18362
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011118.1_g000003.1.cds

Sequence Viewer

Length: 1581 bp
atgaagttgccgagttctttagcagcagttttcttcattctctcaaccctttggctctcaactacttcaaatcccattctcgaaaacttccttaaatgccttccagaacaaacgcactccaactactccatctctgaagccttttacacccgccaaaatgccacttttgaatccgttctgctggcatacatcagaaacggcagatatttaacccctacaactccgaaaccattggctattgtaacagccaagcatgaatcccacgtgcaagcaactgtgatctgtgcaaagcggcatggcttgcagattagaatccgaagtggaggccacgattacgagggtctatcttacgtgtcacatgtcccctttgttattcttgacatgtttcatctccgcgccattcatgttgatgtcgcggatgagagtgcttgggttgagtctggggctattgttggtgagctttactacgaaatcgcaaagaacagtaaagttcatgggttttcagctgcagctggtccaactgtcggtgttggtggtcactttagtggcggtgggtatggtgtcatgatgagaaaatatgggctcaccgtggataacattgaagatgctaaactagttaatgtgaatggtactgttcttgatagaaagtctatgggagaagatcttttttgggccattagaggtggtggagcaagctttggagtcattttgtcatggaaaataaagctgcttccagtgccagccaaagtgactgtattcaacatcggaaggacccttgagcaaggcgctacagatgttctttaccggtggcaacacgtcgcacctaagctacctaaagaaatcttcatcagagcaatgcctcaagtgttgaatactagtttgggtaacaagactgtggaagtgtcattcattggtttcttcttgggacaaagtgatgagcttctttcattgataaataggagtcttcctgaattgggtttgcagaaaacagattgctatgaaatgagttgggtagaatctacggtattttgggatgatcgcccacttggaacttccatagatgttctactcgaaaggcccagggggccacaccacagcatgaaagggaagtctgactatgtgaaagaaccaattccaaaacaagacatagaattcatattgaaggagctacttaagatggaaaacttttggatgcaatggaacccttatggtggaagaatgagtgagatttctgagtcggaaactcccttccctcacagagccggaaacctgtttttgattcaatacgattggtcgtgggaggaagaagggattgaggccaccaacaagtaccttagcttatctagaaaattttacaaaataatgactccatttgtatccaagagaccaagagaggccttccaaatctacagggatcttgacattggggccaatttggataatcagaccatctttaataatgctagagtctatggaagcaaatactttgaaggtaattttgaaaggctggtacatgtgaagaccgaggttgatccccaaaactttttcaagcatgaacaaggtattccacctcttgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

526

Amino Acids

59.49

Weight (kDa)

6.77

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 396, 416
AciI CCGC 5 cut(s) 151, 292, 394, 416, 549
AclWI GGATC 2 cut(s) 1422, 1526
AcsI RAATTY 2 cut(s) 1151, 1349
AcuI CTGAAG 1 cut(s) 156
AcvI CACGTG 1 cut(s) 265
AfaI GTAC 3 cut(s) 631, 1331, 1512
AfiI CCNNNNNNNGG 3 cut(s) 524, 974, 1211
AflII CTTAAG 1 cut(s) 1172
AflIII ACRYGT 5 cut(s) 351, 358, 381, 814, 1513
AgeI ACCGGT 1 cut(s) 804
AhlI ACTAGT 2 cut(s) 613, 875
AjiI CACGTC 1 cut(s) 817
AjnI CCWGG 1 cut(s) 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AleI CACNNNNGTG 1 cut(s) 543
AluBI AGCT 9 cut(s) 460, 506, 512, 696, 727, 829, 940, 1168, 1338
AluI AGCT 9 cut(s) 460, 506, 512, 696, 727, 829, 940, 1168, 1338
Alw26I GTCTC 1 cut(s) 1378
AlwI GGATC 2 cut(s) 1422, 1526
AoxI GGCC 7 cut(s) 325, 672, 1076, 1085, 1317, 1395, 1428
ApeKI GCWGC 4 cut(s) 23, 506, 509, 727
ApoI RAATTY 2 cut(s) 1151, 1349
AsiGI ACCGGT 1 cut(s) 804
Asp700I GAANNNNTTC 2 cut(s) 174, 1131
AspLEI GCGC 2 cut(s) 398, 788
AspS9I GGNCC 6 cut(s) 515, 672, 771, 1077, 1085, 1428
AsuHPI GGTGA 2 cut(s) 467, 577
AvaII GGWCC 2 cut(s) 515, 771
BanII GRGCYC 1 cut(s) 585
BbrPI CACGTG 1 cut(s) 265
BbsI GAAGAC 2 cut(s) 956, 1526
BbvI GCAGC 4 cut(s) 35, 493, 521, 714
BccI CCATC 3 cut(s) 137, 1171, 1457
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 1081
BciVI GTATCC 1 cut(s) 1387
BcoDI GTCTC 1 cut(s) 1378
BcuI ACTAGT 2 cut(s) 613, 875
BfaI CTAG 5 cut(s) 614, 876, 1344, 1464, 1579
BfmI CTRYAG 3 cut(s) 507, 789, 1408
BfoI RGCGCY 1 cut(s) 789
BfrI CTTAAG 1 cut(s) 1172
BfuI GTATCC 1 cut(s) 1387
BglI GCCNNNNNGGC 1 cut(s) 1084
BglII AGATCT 1 cut(s) 661
BisI GCNGC 5 cut(s) 24, 293, 507, 510, 728
BlsI GCNGC 5 cut(s) 25, 294, 508, 511, 729
Bme1390I CCNGG 1 cut(s) 1081
Bme18I GGWCC 2 cut(s) 515, 771
BmgBI CACGTC 1 cut(s) 817
BmgT120I GGNCC 6 cut(s) 515, 672, 771, 1077, 1085, 1428
BmiI GGNNCC 4 cut(s) 773, 1086, 1202, 1429
BmrFI CCNGG 1 cut(s) 1081
BmsI GCATC 2 cut(s) 595, 1182
BpiI GAAGAC 2 cut(s) 956, 1526
Bpu10I CCTNAGC 2 cut(s) 825, 1334
BpuEI CTTGAG 2 cut(s) 797, 846
BsaAI YACGTR 2 cut(s) 265, 352
BsaBI GATNNNNATC 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 1378
BsaJI CCNNGG 4 cut(s) 588, 1079, 1080, 1524
BsaWI WCCGGW 1 cut(s) 804
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 974, 1211
Bse118I RCCGGY 1 cut(s) 804
Bse1I ACTGG 1 cut(s) 734
Bse3DI GCAATG 2 cut(s) 861, 1202
Bse8I GATNNNNATC 1 cut(s) 311
BseBI CCWGG 1 cut(s) 1081
BseDI CCNNGG 4 cut(s) 588, 1079, 1080, 1524
BseGI GGATG 3 cut(s) 424, 1039, 1197
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 3 cut(s) 524, 974, 1211
BseMI GCAATG 2 cut(s) 861, 1202
BseMII CTCAG 1 cut(s) 1224
BseNI ACTGG 1 cut(s) 734
BseXI GCAGC 4 cut(s) 35, 493, 521, 714
Bsh1236I CGCG 2 cut(s) 396, 416
BshFI GGCC 7 cut(s) 327, 674, 1078, 1087, 1319, 1397, 1430
BshTI ACCGGT 1 cut(s) 804
BsiSI CCGG 2 cut(s) 805, 1263
BslFI GGGAC 2 cut(s) 347, 939
BslI CCNNNNNNNGG 3 cut(s) 524, 974, 1211
BsmAI GTCTC 1 cut(s) 1378
BsmFI GGGAC 2 cut(s) 347, 939
BsnI GGCC 7 cut(s) 327, 674, 1078, 1087, 1319, 1397, 1430
Bso31I GGTCTC 1 cut(s) 1378
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 5 cut(s) 279, 661, 1036, 1414, 1531
BspACI CCGC 5 cut(s) 151, 292, 394, 416, 549
BspANI GGCC 7 cut(s) 327, 674, 1078, 1087, 1319, 1397, 1430
BspCNI CTCAG 1 cut(s) 1225
BspFNI CGCG 2 cut(s) 396, 416
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 4 cut(s) 773, 1086, 1202, 1429
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 2 cut(s) 1422, 1526
BspTI CTTAAG 1 cut(s) 1172
BspTNI GGTCTC 1 cut(s) 1378
BsrDI GCAATG 2 cut(s) 861, 1202
BsrFI RCCGGY 1 cut(s) 804
BsrI ACTGG 1 cut(s) 734
BssAI RCCGGY 1 cut(s) 804
BssECI CCNNGG 4 cut(s) 588, 1079, 1080, 1524
BssMI GATC 5 cut(s) 279, 661, 1036, 1414, 1531
Bst2UI CCWGG 1 cut(s) 1081
Bst4CI ACNGT 8 cut(s) 277, 485, 523, 589, 634, 754, 895, 1024
BstAFI CTTAAG 1 cut(s) 1172
BstAPI GCANNNNNTGC 1 cut(s) 301
BstBAI YACGTR 2 cut(s) 265, 352
BstC8I GCNNGC 5 cut(s) 183, 270, 302, 694, 741
BstDEI CTNAG 3 cut(s) 825, 1233, 1334
BstDSI CCRYGG 1 cut(s) 588
BstF5I GGATG 3 cut(s) 424, 1039, 1197
BstFNI CGCG 2 cut(s) 396, 416
BstH2I RGCGCY 1 cut(s) 789
BstHHI GCGC 2 cut(s) 398, 788
BstKTI GATC 5 cut(s) 282, 664, 1039, 1417, 1534
BstMAI GTCTC 1 cut(s) 1378
BstMBI GATC 5 cut(s) 279, 661, 1036, 1414, 1531
BstMWI GCNNNNNNNGC 3 cut(s) 301, 736, 1084
BstNI CCWGG 1 cut(s) 1081
BstNSI RCATGY 3 cut(s) 362, 385, 1517
BstSCI CCNGG 1 cut(s) 1079
BstSFI CTRYAG 3 cut(s) 507, 789, 1408
BstUI CGCG 2 cut(s) 396, 416
BstV1I GCAGC 4 cut(s) 35, 493, 521, 714
BstV2I GAAGAC 2 cut(s) 956, 1526
BstX2I RGATCY 2 cut(s) 661, 1414
BstYI RGATCY 2 cut(s) 661, 1414
BsuI GTATCC 1 cut(s) 1387
BsuRI GGCC 7 cut(s) 327, 674, 1078, 1087, 1319, 1397, 1430
BtgI CCRYGG 1 cut(s) 588
BtrI CACGTC 1 cut(s) 817
BtsCI GGATG 3 cut(s) 424, 1039, 1197
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 5 cut(s) 183, 270, 302, 694, 741
CciI TCATGA 1 cut(s) 564
CfoI GCGC 2 cut(s) 398, 788
Cfr10I RCCGGY 1 cut(s) 804
Cfr13I GGNCC 6 cut(s) 515, 672, 771, 1077, 1085, 1428
Csp6I GTAC 3 cut(s) 630, 1330, 1511
CspAI ACCGGT 1 cut(s) 804
CviQI GTAC 3 cut(s) 630, 1330, 1511
DdeI CTNAG 3 cut(s) 825, 1233, 1334
DpnI GATC 5 cut(s) 281, 663, 1038, 1416, 1533
DpnII GATC 5 cut(s) 279, 661, 1036, 1414, 1531
Eco147I AGGCCT 1 cut(s) 1397
Eco24I GRGCYC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 1378
Eco47I GGWCC 2 cut(s) 515, 771
Eco57I CTGAAG 1 cut(s) 156
Eco72I CACGTG 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 771
EcoRI GAATTC 1 cut(s) 1151
EcoRII CCWGG 1 cut(s) 1079
EcoT38I GRGCYC 1 cut(s) 585
FaqI GGGAC 2 cut(s) 347, 939
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 5 cut(s) 24, 293, 507, 510, 728
FokI GGATG 3 cut(s) 431, 1046, 1204
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 5 cut(s) 24, 293, 507, 510, 728
FspBI CTAG 5 cut(s) 614, 876, 1344, 1464, 1579
GlaI GCGC 2 cut(s) 397, 787
GluI GCNGC 5 cut(s) 24, 293, 507, 510, 728
HaeII RGCGCY 1 cut(s) 789
HaeIII GGCC 7 cut(s) 327, 674, 1078, 1087, 1319, 1397, 1430
HapII CCGG 2 cut(s) 805, 1263
HhaI GCGC 2 cut(s) 398, 788
Hin6I GCGC 2 cut(s) 396, 786
HinP1I GCGC 2 cut(s) 396, 786
HindIII AAGCTT 1 cut(s) 694
HpaII CCGG 2 cut(s) 805, 1263
HphI GGTGA 2 cut(s) 467, 577
Hpy188III TCNNGA 8 cut(s) 80, 104, 377, 565, 638, 968, 1344, 1418
Hpy99I CGWCG 1 cut(s) 821
HpyAV CCTTC 7 cut(s) 110, 762, 1156, 1258, 1301, 1408, 1484
HpyCH4III ACNGT 8 cut(s) 277, 485, 523, 589, 634, 754, 895, 1024
HpyCH4IV ACGT 3 cut(s) 264, 351, 816
HpyCH4V TGCA 6 cut(s) 268, 287, 304, 509, 982, 1195
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 736, 1084
HpyF3I CTNAG 3 cut(s) 825, 1233, 1334
HpySE526I ACGT 3 cut(s) 264, 351, 816
HspAI GCGC 2 cut(s) 396, 786
Kzo9I GATC 5 cut(s) 279, 661, 1036, 1414, 1531
LmnI GCTCC 2 cut(s) 689, 1165
Lsp1109I GCAGC 4 cut(s) 35, 493, 521, 714
LweI GCATC 2 cut(s) 595, 1182
MaeI CTAG 5 cut(s) 614, 876, 1344, 1464, 1579
MaeII ACGT 3 cut(s) 264, 351, 816
MaeIII GTNAC 5 cut(s) 241, 354, 536, 748, 884
MalI GATC 5 cut(s) 281, 663, 1038, 1416, 1533
MboI GATC 5 cut(s) 279, 661, 1036, 1414, 1531
MboII GAAGA 9 cut(s) 25, 614, 671, 835, 910, 956, 1227, 1316, 1531
MflI RGATCY 2 cut(s) 661, 1414
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 6 cut(s) 971, 1131, 1151, 1349, 1432, 1495
MlyI GAGTC 6 cut(s) 446, 711, 970, 1244, 1360, 1476
MmeI TCCRAC 3 cut(s) 144, 542, 1218
MroXI GAANNNNTTC 2 cut(s) 174, 1131
MseI TTAA 5 cut(s) 93, 209, 618, 1173, 1455
MslI CAYNNNNRTG 2 cut(s) 408, 543
MspA1I CMGCKG 2 cut(s) 506, 512
MspCI CTTAAG 1 cut(s) 1172
MspI CCGG 2 cut(s) 805, 1263
MspR9I CCNGG 1 cut(s) 1081
MvaI CCWGG 1 cut(s) 1081
MvnI CGCG 2 cut(s) 396, 416
MwoI GCNNNNNNNGC 3 cut(s) 301, 736, 1084
NdeII GATC 5 cut(s) 279, 661, 1036, 1414, 1531
NlaIV GGNNCC 4 cut(s) 773, 1086, 1202, 1429
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 3 cut(s) 354, 536, 748
NspI RCATGY 3 cut(s) 362, 385, 1517
OliI CACNNNNGTG 1 cut(s) 543
PagI TCATGA 1 cut(s) 564
PasI CCCWGGG 1 cut(s) 1080
PceI AGGCCT 1 cut(s) 1397
PciI ACATGT 3 cut(s) 358, 381, 1513
PdmI GAANNNNTTC 2 cut(s) 174, 1131
PfeI GAWTC 5 cut(s) 170, 257, 312, 1016, 1279
PinAI ACCGGT 1 cut(s) 804
PkrI GCNGC 5 cut(s) 25, 294, 508, 511, 729
PleI GAGTC 6 cut(s) 445, 710, 969, 1243, 1360, 1475
PmaCI CACGTG 1 cut(s) 265
PmlI CACGTG 1 cut(s) 265
PpsI GAGTC 6 cut(s) 445, 710, 969, 1243, 1360, 1475
Ppu21I YACGTR 2 cut(s) 265, 352
PpuMI RGGWCCY 1 cut(s) 771
PscI ACATGT 3 cut(s) 358, 381, 1513
Psp5II RGGWCCY 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 1079
PspCI CACGTG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 1079
PspN4I GGNNCC 4 cut(s) 773, 1086, 1202, 1429
PspPI GGNCC 6 cut(s) 515, 672, 771, 1077, 1085, 1428
PspPPI RGGWCCY 1 cut(s) 771
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 661, 1414
PvuII CAGCTG 2 cut(s) 506, 512
RsaI GTAC 3 cut(s) 631, 1331, 1512
RsaNI GTAC 3 cut(s) 630, 1330, 1511
RseI CAYNNNNRTG 2 cut(s) 408, 543
SaqAI TTAA 5 cut(s) 93, 209, 618, 1173, 1455
SatI GCNGC 5 cut(s) 24, 293, 507, 510, 728
Sau3AI GATC 5 cut(s) 279, 661, 1036, 1414, 1531
Sau96I GGNCC 6 cut(s) 515, 672, 771, 1077, 1085, 1428
SchI GAGTC 6 cut(s) 446, 711, 970, 1244, 1360, 1476
ScrFI CCNGG 1 cut(s) 1081
SduI GDGCHC 1 cut(s) 585
SfaNI GCATC 2 cut(s) 595, 1182
SfcI CTRYAG 3 cut(s) 507, 789, 1408
SfiI GGCCNNNNNGGCC 1 cut(s) 1084
SinI GGWCC 2 cut(s) 515, 771
SmiMI CAYNNNNRTG 2 cut(s) 408, 543
SmlI CTYRAG 3 cut(s) 776, 861, 1172
SmoI CTYRAG 3 cut(s) 776, 861, 1172
SpeI ACTAGT 2 cut(s) 613, 875
Sse9I AATT 6 cut(s) 971, 1131, 1151, 1349, 1432, 1495
SseBI AGGCCT 1 cut(s) 1397
SsiI CCGC 5 cut(s) 151, 292, 394, 416, 549
SspMI CTAG 5 cut(s) 614, 876, 1344, 1464, 1579
StuI AGGCCT 1 cut(s) 1397
StyD4I CCNGG 1 cut(s) 1079
TaaI ACNGT 8 cut(s) 277, 485, 523, 589, 634, 754, 895, 1024
TaiI ACGT 3 cut(s) 267, 354, 819
TaqI TCGA 2 cut(s) 81, 1071
TaqII GACCGA 1 cut(s) 1538
TasI AATT 6 cut(s) 971, 1131, 1151, 1349, 1432, 1495
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 5 cut(s) 170, 257, 312, 1016, 1279
Tru1I TTAA 5 cut(s) 93, 209, 618, 1173, 1455
Tru9I TTAA 5 cut(s) 93, 209, 618, 1173, 1455
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 3 cut(s) 354, 536, 748
TseI GCWGC 4 cut(s) 23, 506, 509, 727
Tsp45I GTSAC 3 cut(s) 354, 536, 748
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 741
Vha464I CTTAAG 1 cut(s) 1172
VpaK11BI GGWCC 2 cut(s) 515, 771
XapI RAATTY 2 cut(s) 1151, 1349
XbaI TCTAGA 1 cut(s) 1343
XceI RCATGY 3 cut(s) 362, 385, 1517
XmnI GAANNNNTTC 2 cut(s) 174, 1131
XspI CTAG 5 cut(s) 614, 876, 1344, 1464, 1579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.