RLG00000032328

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000956
Physical Location & Seq
Reverse (-)
13597133 .. 13598741
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032328

Sequence Viewer

Length: 1524 bp
ATGAAACAAACTCTAATGAAGTTGCCGAGTTCTTTAGCAGTCATTCTCTTCATTCTCTCAACCCTTTGGCTCTCAACTACTTCAAATCCTATTCTCGAAAACTTCCTCAAATGCCTTCCAGAACAAACTCACTCCAAGTACTCCATCTCTGAAGCCATTTACACCCGCCAAAATGCCACTTTTGAATCTGTTCTGCTGTCATACATCAGAAACGGCAGATATTTAACCCCTACAACTCCGAAACCATTGGCTATTGTAACAGCCAAGCATGAATCCCACGTGCAAGCAACTGTGATCTGTGCAAAGCGGCATGGCTTGCAGATAAGAATCCGAAGTGGAGGCCACGATTACGAAGGTCTATCTTACGTGTCACATGTCCCCTTTGTTATTCTTGACATGTTTCATCTCCGCGCCATTCATGTTGATGTCGCGGATGAAAGTGCTTGGGTAGAGTCAGGGGCTACTGTTGGTGAACTTTACTATGAAATCGCAAAGAACAGTAAAGTTCATGGGTTTTCAGGTGCAGCTGGTCCAACTGTCGGTGTTGGTGGTCACTTTAGTGGCGGTGGGTATGGTGTCATGATGAGAAAATATGGGCTCACCGTGGATAACATTGAAGATGCTAAACTAGTTAATGTGAATGGTACAGTTCTTGATAGAAAGTCTATGGGAGAAGATCTTTTTTGGGCGATTAGAGGTGGTGGTGGAGCAAGCTTTGGAGTCATTTTGTCATGGAAAATAAAGCTGCTTCCAGTGCCAGCCAAAGTGACTGTATTCAACATCGGAAGGACCCTTGAGCAAGGCGCTACAGATGTTCTTTACCGGTGGCAACAAGTCGCACCTAACCTACCTAAAGAAATCTTCATCAGAGCAATGCCTCAAGTGTCGAATACTAGTTTGGGTAACAAGACCGTGGAAGTGTCATTCATTGGTTTCTTCTTGGGACAAAGTGATGAGCTTCTTTCATTGATAAATAGGAGTCTTCCTGAATTGGATGTTCTACTTGAAAGGCCCAAGGGGCCAACAGACAACTTCAAAGGCAAGTCTGACTATGTGAAAGAACCAATTCCAAAACAGGACATAGAATTCATATTGAAGGAGCTACTTGAGATAGAAAACTTGTGGATGCAATGGAACCCTTATGGTGGAAGAATGAGTGAGATTTCTGAGTCGGAAACTCCCTTCCCTCACAGAGCCGGAAACCTGTTCATGATTCAATACCCTATGTCGTGGCAGGAAGAAGGGATTGAGGCCACCAACAAGTACCTTAGCTTATCTAGAAAATTTTACAAAATAATGACTCCATTTGTATCCAAGAGACCAAGAGAGGCCTTCCAAAACTACAGGGATCTTGACATTGGGGCCAATTTGGATAATCAGACCATCTTTAATATTGCTAGAGTGTATGGAAGCAAATACTTTGAAGGTAATTTTGAAAGGCTGGTACATGTGAAGACCGAGGTTGATCCCCAAAACTTTTTCAAGCATGAACAAAGTATTCCACCTCTTGCCCAGTTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

508

Amino Acids

57.12

Weight (kDa)

7.76

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 82 - 218 1.1e-26 FAD binding domain
BBE PF08031 444 - 501 9.5e-18 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 411, 431
AciI CCGC 5 cut(s) 166, 307, 409, 431, 564
AclWI GGATC 2 cut(s) 1356, 1460
AcsI RAATTY 2 cut(s) 1085, 1283
AcuI CTGAAG 1 cut(s) 171
AcvI CACGTG 1 cut(s) 280
AfaI GTAC 4 cut(s) 140, 646, 1265, 1446
AfiI CCNNNNNNNGG 2 cut(s) 539, 1145
AflIII ACRYGT 4 cut(s) 366, 373, 396, 1447
AgeI ACCGGT 1 cut(s) 822
AhlI ACTAGT 2 cut(s) 628, 893
AjuI GAANNNNNNNTTGG 2 cut(s) 881, 913
AleI CACNNNNGTG 1 cut(s) 558
AluBI AGCT 6 cut(s) 527, 714, 745, 958, 1102, 1272
AluI AGCT 6 cut(s) 527, 714, 745, 958, 1102, 1272
Alw26I GTCTC 1 cut(s) 1312
AlwI GGATC 2 cut(s) 1356, 1460
AoxI GGCC 6 cut(s) 340, 1010, 1019, 1251, 1329, 1362
ApeKI GCWGC 2 cut(s) 524, 745
ApoI RAATTY 2 cut(s) 1085, 1283
AsiGI ACCGGT 1 cut(s) 822
Asp700I GAANNNNTTC 2 cut(s) 189, 1065
AspLEI GCGC 2 cut(s) 413, 806
AspS9I GGNCC 5 cut(s) 530, 789, 1011, 1019, 1362
AsuHPI GGTGA 2 cut(s) 482, 592
AvaII GGWCC 2 cut(s) 530, 789
BanII GRGCYC 1 cut(s) 600
BbrPI CACGTG 1 cut(s) 280
BbsI GAAGAC 2 cut(s) 974, 1460
BbvI GCAGC 2 cut(s) 536, 732
BccI CCATC 2 cut(s) 152, 1391
BceAI ACGGC 1 cut(s) 229
BciVI GTATCC 1 cut(s) 1321
BcoDI GTCTC 1 cut(s) 1312
BcuI ACTAGT 2 cut(s) 628, 893
BfaI CTAG 4 cut(s) 629, 894, 1278, 1398
BfmI CTRYAG 2 cut(s) 807, 1342
BfoI RGCGCY 1 cut(s) 807
BfuI GTATCC 1 cut(s) 1321
BglI GCCNNNNNGGC 1 cut(s) 1018
BglII AGATCT 1 cut(s) 676
BisI GCNGC 3 cut(s) 308, 525, 746
BlsI GCNGC 3 cut(s) 309, 526, 747
BmcAI AGTACT 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 530, 789
BmgT120I GGNCC 5 cut(s) 530, 789, 1011, 1019, 1362
BmiI GGNNCC 4 cut(s) 791, 1020, 1136, 1363
BmrI ACTGGG 1 cut(s) 1507
BmsI GCATC 2 cut(s) 610, 1116
BmuI ACTGGG 1 cut(s) 1507
BpiI GAAGAC 2 cut(s) 974, 1460
Bpu10I CCTNAGC 1 cut(s) 1268
BpuEI CTTGAG 3 cut(s) 815, 864, 1127
BsaAI YACGTR 2 cut(s) 280, 367
BsaBI GATNNNNATC 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 1312
BsaJI CCNNGG 4 cut(s) 603, 912, 1014, 1458
BsaWI WCCGGW 1 cut(s) 822
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 1145
Bse118I RCCGGY 1 cut(s) 822
Bse1I ACTGG 2 cut(s) 752, 1513
Bse3DI GCAATG 2 cut(s) 879, 1136
Bse8I GATNNNNATC 1 cut(s) 326
BseDI CCNNGG 4 cut(s) 603, 912, 1014, 1458
BseGI GGATG 3 cut(s) 439, 1000, 1131
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 539, 1145
BseMI GCAATG 2 cut(s) 879, 1136
BseMII CTCAG 1 cut(s) 1158
BseNI ACTGG 2 cut(s) 752, 1513
BseXI GCAGC 2 cut(s) 536, 732
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 2 cut(s) 411, 431
BshFI GGCC 6 cut(s) 342, 1012, 1021, 1253, 1331, 1364
BshTI ACCGGT 1 cut(s) 822
BsiSI CCGG 2 cut(s) 823, 1197
BslFI GGGAC 2 cut(s) 362, 957
BslI CCNNNNNNNGG 2 cut(s) 539, 1145
BsmAI GTCTC 1 cut(s) 1312
BsmFI GGGAC 2 cut(s) 362, 957
BsnI GGCC 6 cut(s) 342, 1012, 1021, 1253, 1331, 1364
Bso31I GGTCTC 1 cut(s) 1312
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 4 cut(s) 294, 676, 1348, 1465
BspACI CCGC 5 cut(s) 166, 307, 409, 431, 564
BspANI GGCC 6 cut(s) 342, 1012, 1021, 1253, 1331, 1364
BspCNI CTCAG 1 cut(s) 1159
BspFNI CGCG 2 cut(s) 411, 431
BspHI TCATGA 2 cut(s) 579, 1209
BspLI GGNNCC 4 cut(s) 791, 1020, 1136, 1363
BspPI GGATC 2 cut(s) 1356, 1460
BspTNI GGTCTC 1 cut(s) 1312
BsrDI GCAATG 2 cut(s) 879, 1136
BsrFI RCCGGY 1 cut(s) 822
BsrI ACTGG 2 cut(s) 752, 1513
BssAI RCCGGY 1 cut(s) 822
BssECI CCNNGG 4 cut(s) 603, 912, 1014, 1458
BssMI GATC 4 cut(s) 294, 676, 1348, 1465
BssT1I CCWWGG 1 cut(s) 1014
Bst4CI ACNGT 8 cut(s) 292, 466, 500, 538, 604, 649, 772, 913
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 316
BstBAI YACGTR 2 cut(s) 280, 367
BstC8I GCNNGC 4 cut(s) 285, 317, 712, 759
BstDEI CTNAG 2 cut(s) 1167, 1268
BstDSI CCRYGG 2 cut(s) 603, 912
BstF5I GGATG 3 cut(s) 439, 1000, 1131
BstFNI CGCG 2 cut(s) 411, 431
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 2 cut(s) 413, 806
BstKTI GATC 4 cut(s) 297, 679, 1351, 1468
BstMAI GTCTC 1 cut(s) 1312
BstMBI GATC 4 cut(s) 294, 676, 1348, 1465
BstMWI GCNNNNNNNGC 3 cut(s) 316, 754, 1018
BstNSI RCATGY 3 cut(s) 377, 400, 1451
BstSFI CTRYAG 2 cut(s) 807, 1342
BstUI CGCG 2 cut(s) 411, 431
BstV1I GCAGC 2 cut(s) 536, 732
BstV2I GAAGAC 2 cut(s) 974, 1460
BstX2I RGATCY 2 cut(s) 676, 1348
BstYI RGATCY 2 cut(s) 676, 1348
BsuI GTATCC 1 cut(s) 1321
BsuRI GGCC 6 cut(s) 342, 1012, 1021, 1253, 1331, 1364
BtgI CCRYGG 2 cut(s) 603, 912
BtsCI GGATG 3 cut(s) 439, 1000, 1131
BtsIMutI CAGTG 1 cut(s) 759
Cac8I GCNNGC 4 cut(s) 285, 317, 712, 759
CciI TCATGA 2 cut(s) 579, 1209
CfoI GCGC 2 cut(s) 413, 806
Cfr10I RCCGGY 1 cut(s) 822
Cfr13I GGNCC 5 cut(s) 530, 789, 1011, 1019, 1362
Csp6I GTAC 4 cut(s) 139, 645, 1264, 1445
CspAI ACCGGT 1 cut(s) 822
CviQI GTAC 4 cut(s) 139, 645, 1264, 1445
DdeI CTNAG 2 cut(s) 1167, 1268
DpnI GATC 4 cut(s) 296, 678, 1350, 1467
DpnII GATC 4 cut(s) 294, 676, 1348, 1465
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 1014
Eco147I AGGCCT 1 cut(s) 1331
Eco24I GRGCYC 1 cut(s) 600
Eco31I GGTCTC 1 cut(s) 1312
Eco47I GGWCC 2 cut(s) 530, 789
Eco57I CTGAAG 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 789
EcoRI GAATTC 1 cut(s) 1085
EcoT14I CCWWGG 1 cut(s) 1014
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 1014
FaqI GGGAC 2 cut(s) 362, 957
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 308, 525, 746
FokI GGATG 3 cut(s) 446, 1007, 1138
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 3 cut(s) 308, 525, 746
FspBI CTAG 4 cut(s) 629, 894, 1278, 1398
GlaI GCGC 2 cut(s) 412, 805
GluI GCNGC 3 cut(s) 308, 525, 746
HaeII RGCGCY 1 cut(s) 807
HaeIII GGCC 6 cut(s) 342, 1012, 1021, 1253, 1331, 1364
HapII CCGG 2 cut(s) 823, 1197
HhaI GCGC 2 cut(s) 413, 806
Hin6I GCGC 2 cut(s) 411, 804
HinP1I GCGC 2 cut(s) 411, 804
HindIII AAGCTT 1 cut(s) 712
HinfI GANTC 9 cut(s) 185, 272, 327, 452, 720, 979, 1169, 1213, 1300
HpaII CCGG 2 cut(s) 823, 1197
HphI GGTGA 2 cut(s) 482, 592
Hpy166II GTNNAC 1 cut(s) 473
Hpy188III TCNNGA 9 cut(s) 95, 119, 392, 580, 653, 986, 1210, 1278, 1352
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 8 cut(s) 125, 347, 780, 1090, 1192, 1235, 1342, 1418
HpyCH4III ACNGT 8 cut(s) 292, 466, 500, 538, 604, 649, 772, 913
HpyCH4IV ACGT 2 cut(s) 279, 366
HpyCH4V TGCA 5 cut(s) 283, 302, 319, 524, 1129
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 754, 1018
HpyF3I CTNAG 2 cut(s) 1167, 1268
HpySE526I ACGT 2 cut(s) 279, 366
HspAI GCGC 2 cut(s) 411, 804
Kzo9I GATC 4 cut(s) 294, 676, 1348, 1465
LmnI GCTCC 2 cut(s) 707, 1099
Lsp1109I GCAGC 2 cut(s) 536, 732
LweI GCATC 2 cut(s) 610, 1116
MaeI CTAG 4 cut(s) 629, 894, 1278, 1398
MaeII ACGT 2 cut(s) 279, 366
MaeIII GTNAC 5 cut(s) 256, 369, 551, 766, 902
MalI GATC 4 cut(s) 296, 678, 1350, 1467
MboI GATC 4 cut(s) 294, 676, 1348, 1465
MboII GAAGA 9 cut(s) 40, 629, 686, 853, 928, 974, 1161, 1250, 1465
MflI RGATCY 2 cut(s) 676, 1348
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 6 cut(s) 989, 1065, 1085, 1283, 1366, 1429
MlyI GAGTC 5 cut(s) 461, 729, 988, 1178, 1294
MmeI TCCRAC 2 cut(s) 557, 1152
MnlI CCTC 9 cut(s) 116, 332, 689, 888, 1197, 1243, 1321, 1453, 1515
MroXI GAANNNNTTC 2 cut(s) 189, 1065
MseI TTAA 3 cut(s) 224, 633, 1389
MslI CAYNNNNRTG 2 cut(s) 423, 558
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 2 cut(s) 823, 1197
MvnI CGCG 2 cut(s) 411, 431
MwoI GCNNNNNNNGC 3 cut(s) 316, 754, 1018
NdeII GATC 4 cut(s) 294, 676, 1348, 1465
NlaIV GGNNCC 4 cut(s) 791, 1020, 1136, 1363
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 3 cut(s) 369, 551, 766
NspI RCATGY 3 cut(s) 377, 400, 1451
OliI CACNNNNGTG 1 cut(s) 558
PagI TCATGA 2 cut(s) 579, 1209
PceI AGGCCT 1 cut(s) 1331
PciI ACATGT 3 cut(s) 373, 396, 1447
PdmI GAANNNNTTC 2 cut(s) 189, 1065
PfeI GAWTC 4 cut(s) 185, 272, 327, 1213
PinAI ACCGGT 1 cut(s) 822
PkrI GCNGC 3 cut(s) 309, 526, 747
PleI GAGTC 5 cut(s) 460, 728, 987, 1177, 1294
PmaCI CACGTG 1 cut(s) 280
PmlI CACGTG 1 cut(s) 280
PpsI GAGTC 5 cut(s) 460, 728, 987, 1177, 1294
Ppu21I YACGTR 2 cut(s) 280, 367
PpuMI RGGWCCY 1 cut(s) 789
PscI ACATGT 3 cut(s) 373, 396, 1447
Psp5II RGGWCCY 1 cut(s) 789
PspCI CACGTG 1 cut(s) 280
PspN4I GGNNCC 4 cut(s) 791, 1020, 1136, 1363
PspPI GGNCC 5 cut(s) 530, 789, 1011, 1019, 1362
PspPPI RGGWCCY 1 cut(s) 789
PsuI RGATCY 2 cut(s) 676, 1348
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 4 cut(s) 140, 646, 1265, 1446
RsaNI GTAC 4 cut(s) 139, 645, 1264, 1445
RseI CAYNNNNRTG 2 cut(s) 423, 558
SaqAI TTAA 3 cut(s) 224, 633, 1389
SatI GCNGC 3 cut(s) 308, 525, 746
Sau3AI GATC 4 cut(s) 294, 676, 1348, 1465
Sau96I GGNCC 5 cut(s) 530, 789, 1011, 1019, 1362
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 5 cut(s) 461, 729, 988, 1178, 1294
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 2 cut(s) 610, 1116
SfcI CTRYAG 2 cut(s) 807, 1342
SfiI GGCCNNNNNGGCC 1 cut(s) 1018
SinI GGWCC 2 cut(s) 530, 789
SmiMI CAYNNNNRTG 2 cut(s) 423, 558
SmlI CTYRAG 3 cut(s) 794, 879, 1106
SmoI CTYRAG 3 cut(s) 794, 879, 1106
SpeI ACTAGT 2 cut(s) 628, 893
Sse9I AATT 6 cut(s) 989, 1065, 1085, 1283, 1366, 1429
SseBI AGGCCT 1 cut(s) 1331
SsiI CCGC 5 cut(s) 166, 307, 409, 431, 564
SspI AATATT 1 cut(s) 1393
SspMI CTAG 4 cut(s) 629, 894, 1278, 1398
StuI AGGCCT 1 cut(s) 1331
StyI CCWWGG 1 cut(s) 1014
TaaI ACNGT 8 cut(s) 292, 466, 500, 538, 604, 649, 772, 913
TaiI ACGT 2 cut(s) 282, 369
TaqI TCGA 2 cut(s) 96, 887
TaqII GACCGA 1 cut(s) 1472
TasI AATT 6 cut(s) 989, 1065, 1085, 1283, 1366, 1429
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 4 cut(s) 185, 272, 327, 1213
Tru1I TTAA 3 cut(s) 224, 633, 1389
Tru9I TTAA 3 cut(s) 224, 633, 1389
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 3 cut(s) 369, 551, 766
TseI GCWGC 2 cut(s) 524, 745
Tsp45I GTSAC 3 cut(s) 369, 551, 766
TspRI CASTG 1 cut(s) 759
VpaK11BI GGWCC 2 cut(s) 530, 789
XapI RAATTY 2 cut(s) 1085, 1283
XbaI TCTAGA 1 cut(s) 1277
XceI RCATGY 3 cut(s) 377, 400, 1451
XmnI GAANNNNTTC 2 cut(s) 189, 1065
XspI CTAG 4 cut(s) 629, 894, 1278, 1398
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.