Berberine and berberine like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 382 |
| AccB1I | GGYRCC | 1 cut(s) | 1529 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1244 |
| AciI | CCGC | 6 cut(s) | 146, 197, 295, 998, 1314, 1429 |
| AclWI | GGATC | 5 cut(s) | 95, 486, 613, 1524, 1628 |
| AcoI | YGGCCR | 1 cut(s) | 421 |
| AcsI | RAATTY | 2 cut(s) | 168, 203 |
| AcuI | CTGAAG | 1 cut(s) | 954 |
| AfaI | GTAC | 4 cut(s) | 459, 1388, 1457, 1614 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 229, 620, 1075, 1076, 1244, 1313, 1428, 1495 |
| AflIII | ACRYGT | 2 cut(s) | 477, 1615 |
| AgsI | TTSAA | 7 cut(s) | 484, 698, 1049, 1103, 1204, 1303, 1591 |
| AhlI | ACTAGT | 1 cut(s) | 709 |
| AleI | CACNNNNGTG | 1 cut(s) | 639 |
| AluBI | AGCT | 6 cut(s) | 15, 602, 795, 928, 1042, 1364 |
| AluI | AGCT | 6 cut(s) | 15, 602, 795, 928, 1042, 1364 |
| Alw26I | GTCTC | 3 cut(s) | 80, 1412, 1483 |
| AlwI | GGATC | 5 cut(s) | 95, 486, 613, 1524, 1628 |
| AoxI | GGCC | 3 cut(s) | 421, 768, 1178 |
| ApeKI | GCWGC | 3 cut(s) | 341, 599, 995 |
| ApoI | RAATTY | 2 cut(s) | 168, 203 |
| AspLEI | GCGC | 2 cut(s) | 383, 887 |
| AspS9I | GGNCC | 2 cut(s) | 656, 768 |
| AsuHPI | GGTGA | 3 cut(s) | 257, 563, 737 |
| AsuII | TTCGAA | 1 cut(s) | 1558 |
| AvaII | GGWCC | 1 cut(s) | 656 |
| BaeGI | GKGCMC | 1 cut(s) | 989 |
| BalI | TGGCCA | 1 cut(s) | 423 |
| BanI | GGYRCC | 1 cut(s) | 1529 |
| BbsI | GAAGAC | 1 cut(s) | 942 |
| BbvI | GCAGC | 3 cut(s) | 353, 611, 982 |
| BccI | CCATC | 2 cut(s) | 900, 1430 |
| BceAI | ACGGC | 1 cut(s) | 1327 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BcoDI | GTCTC | 3 cut(s) | 80, 1412, 1483 |
| BcuI | ACTAGT | 1 cut(s) | 709 |
| BfaI | CTAG | 4 cut(s) | 705, 710, 1160, 1176 |
| BfmI | CTRYAG | 1 cut(s) | 1510 |
| BfoI | RGCGCY | 1 cut(s) | 888 |
| BglII | AGATCT | 1 cut(s) | 757 |
| BisI | GCNGC | 3 cut(s) | 342, 600, 996 |
| BlsI | GCNGC | 3 cut(s) | 343, 601, 997 |
| BmcAI | AGTACT | 1 cut(s) | 1388 |
| Bme18I | GGWCC | 1 cut(s) | 656 |
| BmgT120I | GGNCC | 2 cut(s) | 656, 768 |
| BmiI | GGNNCC | 3 cut(s) | 976, 1470, 1531 |
| BmrI | ACTGGG | 1 cut(s) | 1139 |
| BmsI | GCATC | 2 cut(s) | 101, 691 |
| BmuI | ACTGGG | 1 cut(s) | 1139 |
| BpiI | GAAGAC | 1 cut(s) | 942 |
| Bpu10I | CCTNAGC | 2 cut(s) | 888, 924 |
| Bpu14I | TTCGAA | 1 cut(s) | 1558 |
| Bsa29I | ATCGAT | 1 cut(s) | 904 |
| BsaAI | YACGTR | 3 cut(s) | 448, 1222, 1616 |
| BsaBI | GATNNNNATC | 1 cut(s) | 407 |
| BsaI | GGTCTC | 1 cut(s) | 1412 |
| BsaWI | WCCGGW | 1 cut(s) | 1545 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 912, 942 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 229, 620, 1075, 1076, 1244, 1313, 1428, 1495 |
| Bse1I | ACTGG | 3 cut(s) | 833, 1145, 1190 |
| Bse8I | GATNNNNATC | 1 cut(s) | 407 |
| BseCI | ATCGAT | 1 cut(s) | 904 |
| BseGI | GGATG | 2 cut(s) | 460, 898 |
| BseJI | GATNNNNATC | 1 cut(s) | 407 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 229, 620, 1075, 1076, 1244, 1313, 1428, 1495 |
| BseMII | CTCAG | 1 cut(s) | 1062 |
| BseNI | ACTGG | 3 cut(s) | 833, 1145, 1190 |
| BseRI | GAGGAG | 1 cut(s) | 792 |
| BseSI | GKGCMC | 1 cut(s) | 989 |
| BseXI | GCAGC | 3 cut(s) | 353, 611, 982 |
| BsgI | GTGCAG | 1 cut(s) | 1523 |
| BshFI | GGCC | 3 cut(s) | 423, 770, 1180 |
| BshNI | GGYRCC | 1 cut(s) | 1529 |
| BshVI | ATCGAT | 1 cut(s) | 904 |
| BsiSI | CCGG | 1 cut(s) | 1546 |
| BslFI | GGGAC | 2 cut(s) | 21, 1041 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 229, 620, 1075, 1076, 1244, 1313, 1428, 1495 |
| BsmAI | GTCTC | 3 cut(s) | 80, 1412, 1483 |
| BsmFI | GGGAC | 2 cut(s) | 21, 1041 |
| BsmI | GAATGC | 1 cut(s) | 194 |
| BsnI | GGCC | 3 cut(s) | 423, 770, 1180 |
| Bso31I | GGTCTC | 1 cut(s) | 1412 |
| Bsp119I | TTCGAA | 1 cut(s) | 1558 |
| Bsp1286I | GDGCHC | 1 cut(s) | 989 |
| Bsp1407I | TGTACA | 1 cut(s) | 1455 |
| BspACI | CCGC | 6 cut(s) | 146, 197, 295, 998, 1314, 1429 |
| BspANI | GGCC | 3 cut(s) | 423, 770, 1180 |
| BspCNI | CTCAG | 1 cut(s) | 1063 |
| BspDI | ATCGAT | 1 cut(s) | 904 |
| BspLI | GGNNCC | 3 cut(s) | 976, 1470, 1531 |
| BspPI | GGATC | 5 cut(s) | 95, 486, 613, 1524, 1628 |
| BspT104I | TTCGAA | 1 cut(s) | 1558 |
| BspT107I | GGYRCC | 1 cut(s) | 1529 |
| BspTNI | GGTCTC | 1 cut(s) | 1412 |
| BsrGI | TGTACA | 1 cut(s) | 1455 |
| BsrI | ACTGG | 3 cut(s) | 833, 1145, 1190 |
| Bst4CI | ACNGT | 4 cut(s) | 67, 373, 685, 853 |
| Bst6I | CTCTTC | 1 cut(s) | 947 |
| BstAUI | TGTACA | 1 cut(s) | 1455 |
| BstBAI | YACGTR | 3 cut(s) | 448, 1222, 1616 |
| BstBI | TTCGAA | 1 cut(s) | 1558 |
| BstC8I | GCNNGC | 3 cut(s) | 279, 366, 793 |
| BstDEI | CTNAG | 3 cut(s) | 888, 924, 1071 |
| BstF5I | GGATG | 2 cut(s) | 460, 898 |
| BstH2I | RGCGCY | 1 cut(s) | 888 |
| BstHHI | GCGC | 2 cut(s) | 383, 887 |
| BstMAI | GTCTC | 3 cut(s) | 80, 1412, 1483 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 338, 1001, 1186 |
| BstNSI | RCATGY | 1 cut(s) | 481 |
| BstSFI | CTRYAG | 1 cut(s) | 1510 |
| BstSLI | GKGCMC | 1 cut(s) | 989 |
| BstSNI | TACGTA | 1 cut(s) | 448 |
| BstV1I | GCAGC | 3 cut(s) | 353, 611, 982 |
| BstV2I | GAAGAC | 1 cut(s) | 942 |
| BstX2I | RGATCY | 4 cut(s) | 605, 757, 1516, 1633 |
| BstYI | RGATCY | 4 cut(s) | 605, 757, 1516, 1633 |
| Bsu15I | ATCGAT | 1 cut(s) | 904 |
| BsuRI | GGCC | 3 cut(s) | 423, 770, 1180 |
| BsuTUI | ATCGAT | 1 cut(s) | 904 |
| BtsCI | GGATG | 2 cut(s) | 460, 898 |
| BtsIMutI | CAGTG | 2 cut(s) | 63, 690 |
| Cac8I | GCNNGC | 3 cut(s) | 279, 366, 793 |
| CfoI | GCGC | 2 cut(s) | 383, 887 |
| Cfr13I | GGNCC | 2 cut(s) | 656, 768 |
| ClaI | ATCGAT | 1 cut(s) | 904 |
| CseI | GACGC | 1 cut(s) | 880 |
| Csp6I | GTAC | 4 cut(s) | 458, 1387, 1456, 1613 |
| CviAII | CATG | 9 cut(s) | 229, 359, 392, 425, 478, 590, 1123, 1244, 1655 |
| CviQI | GTAC | 4 cut(s) | 458, 1387, 1456, 1613 |
| DdeI | CTNAG | 3 cut(s) | 888, 924, 1071 |
| EaeI | YGGCCR | 1 cut(s) | 421 |
| Eam1104I | CTCTTC | 1 cut(s) | 947 |
| EarI | CTCTTC | 1 cut(s) | 947 |
| EciI | GGCGGA | 1 cut(s) | 1329 |
| Eco105I | TACGTA | 1 cut(s) | 448 |
| Eco31I | GGTCTC | 1 cut(s) | 1412 |
| Eco32I | GATATC | 1 cut(s) | 118 |
| Eco47I | GGWCC | 1 cut(s) | 656 |
| Eco57I | CTGAAG | 1 cut(s) | 954 |
| EcoRV | GATATC | 1 cut(s) | 118 |
| FaeI | CATG | 9 cut(s) | 232, 362, 395, 428, 481, 593, 1126, 1247, 1658 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1155, 1187, 1483, 1515, 1583, 1615 |
| FaqI | GGGAC | 2 cut(s) | 21, 1041 |
| FatI | CATG | 9 cut(s) | 228, 358, 391, 424, 477, 589, 1122, 1243, 1654 |
| FauNDI | CATATG | 1 cut(s) | 1474 |
| Fnu4HI | GCNGC | 3 cut(s) | 342, 600, 996 |
| FokI | GGATG | 2 cut(s) | 467, 905 |
| Fsp4HI | GCNGC | 3 cut(s) | 342, 600, 996 |
| FspBI | CTAG | 4 cut(s) | 705, 710, 1160, 1176 |
| FspI | TGCGCA | 1 cut(s) | 382 |
| GlaI | GCGC | 2 cut(s) | 382, 886 |
| GluI | GCNGC | 3 cut(s) | 342, 600, 996 |
| HaeII | RGCGCY | 1 cut(s) | 888 |
| HaeIII | GGCC | 3 cut(s) | 423, 770, 1180 |
| HapII | CCGG | 1 cut(s) | 1546 |
| HgaI | GACGC | 1 cut(s) | 880 |
| HhaI | GCGC | 2 cut(s) | 383, 887 |
| Hin1II | CATG | 9 cut(s) | 232, 362, 395, 428, 481, 593, 1126, 1247, 1658 |
| Hin6I | GCGC | 2 cut(s) | 381, 885 |
| HinP1I | GCGC | 2 cut(s) | 381, 885 |
| HindIII | AAGCTT | 2 cut(s) | 793, 1040 |
| HinfI | GANTC | 4 cut(s) | 408, 801, 1118, 1337 |
| HpaII | CCGG | 1 cut(s) | 1546 |
| HphI | GGTGA | 3 cut(s) | 257, 563, 737 |
| Hpy166II | GTNNAC | 3 cut(s) | 213, 554, 1082 |
| Hpy188I | TCNGA | 6 cut(s) | 153, 413, 454, 1216, 1272, 1336 |
| Hpy188III | TCNNGA | 4 cut(s) | 473, 1341, 1446, 1520 |
| Hpy8I | GTNNAC | 3 cut(s) | 213, 554, 1082 |
| HpyAV | CCTTC | 5 cut(s) | 40, 428, 509, 985, 1396 |
| HpyCH4III | ACNGT | 4 cut(s) | 67, 373, 685, 853 |
| HpyCH4IV | ACGT | 5 cut(s) | 447, 915, 1221, 1570, 1615 |
| HpyCH4V | TGCA | 9 cut(s) | 20, 92, 364, 400, 599, 920, 1297, 1504, 1540 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 338, 1001, 1186 |
| HpyF3I | CTNAG | 3 cut(s) | 888, 924, 1071 |
| HpySE526I | ACGT | 5 cut(s) | 447, 915, 1221, 1570, 1615 |
| Hsp92II | CATG | 9 cut(s) | 232, 362, 395, 428, 481, 593, 1126, 1247, 1658 |
| HspAI | GCGC | 2 cut(s) | 381, 885 |
| LmnI | GCTCC | 4 cut(s) | 788, 933, 980, 1474 |
| Lsp1109I | GCAGC | 3 cut(s) | 353, 611, 982 |
| LweI | GCATC | 2 cut(s) | 101, 691 |
| MaeI | CTAG | 4 cut(s) | 705, 710, 1160, 1176 |
| MaeII | ACGT | 5 cut(s) | 447, 915, 1221, 1570, 1615 |
| MaeIII | GTNAC | 4 cut(s) | 508, 632, 847, 1595 |
| MfeI | CAATTG | 3 cut(s) | 546, 1049, 1298 |
| MflI | RGATCY | 4 cut(s) | 605, 757, 1516, 1633 |
| MhlI | GDGCHC | 1 cut(s) | 989 |
| MlsI | TGGCCA | 1 cut(s) | 423 |
| MluNI | TGGCCA | 1 cut(s) | 423 |
| MlyI | GAGTC | 1 cut(s) | 810 |
| MmeI | TCCRAC | 4 cut(s) | 550, 1129, 1229, 1239 |
| Mox20I | TGGCCA | 1 cut(s) | 423 |
| MscI | TGGCCA | 1 cut(s) | 423 |
| MseI | TTAA | 3 cut(s) | 504, 714, 1678 |
| MslI | CAYNNNNRTG | 2 cut(s) | 429, 639 |
| Msp20I | TGGCCA | 1 cut(s) | 423 |
| MspA1I | CMGCKG | 1 cut(s) | 602 |
| MspI | CCGG | 1 cut(s) | 1546 |
| MunI | CAATTG | 3 cut(s) | 546, 1049, 1298 |
| Mva1269I | GAATGC | 1 cut(s) | 194 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 338, 1001, 1186 |
| NdeI | CATATG | 1 cut(s) | 1474 |
| NlaIII | CATG | 9 cut(s) | 232, 362, 395, 428, 481, 593, 1126, 1247, 1658 |
| NlaIV | GGNNCC | 3 cut(s) | 976, 1470, 1531 |
| NmuCI | GTSAC | 3 cut(s) | 508, 632, 847 |
| NsbI | TGCGCA | 1 cut(s) | 382 |
| NspI | RCATGY | 1 cut(s) | 481 |
| NspV | TTCGAA | 1 cut(s) | 1558 |
| OliI | CACNNNNGTG | 1 cut(s) | 639 |
| PciI | ACATGT | 1 cut(s) | 477 |
| PctI | GAATGC | 1 cut(s) | 194 |
| PfeI | GAWTC | 3 cut(s) | 408, 1118, 1337 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1244 |
| PkrI | GCNGC | 3 cut(s) | 343, 601, 997 |
| PleI | GAGTC | 1 cut(s) | 809 |
| PpsI | GAGTC | 1 cut(s) | 809 |
| Ppu21I | YACGTR | 3 cut(s) | 448, 1222, 1616 |
| PscI | ACATGT | 1 cut(s) | 477 |
| PspN4I | GGNNCC | 3 cut(s) | 976, 1470, 1531 |
| PspPI | GGNCC | 2 cut(s) | 656, 768 |
| PsuI | RGATCY | 4 cut(s) | 605, 757, 1516, 1633 |
| PvuII | CAGCTG | 1 cut(s) | 602 |
| RsaI | GTAC | 4 cut(s) | 459, 1388, 1457, 1614 |
| RsaNI | GTAC | 4 cut(s) | 458, 1387, 1456, 1613 |
| RseI | CAYNNNNRTG | 2 cut(s) | 429, 639 |
| SaqAI | TTAA | 3 cut(s) | 504, 714, 1678 |
| SatI | GCNGC | 3 cut(s) | 342, 600, 996 |
| Sau96I | GGNCC | 2 cut(s) | 656, 768 |
| ScaI | AGTACT | 1 cut(s) | 1388 |
| SchI | GAGTC | 1 cut(s) | 810 |
| SduI | GDGCHC | 1 cut(s) | 989 |
| SfaNI | GCATC | 2 cut(s) | 101, 691 |
| SfcI | CTRYAG | 1 cut(s) | 1510 |
| SfuI | TTCGAA | 1 cut(s) | 1558 |
| SinI | GGWCC | 1 cut(s) | 656 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 429, 639 |
| SnaBI | TACGTA | 1 cut(s) | 448 |
| SpeI | ACTAGT | 1 cut(s) | 709 |
| SsiI | CCGC | 6 cut(s) | 146, 197, 295, 998, 1314, 1429 |
| SspI | AATATT | 4 cut(s) | 694, 1008, 1435, 1586 |
| SspMI | CTAG | 4 cut(s) | 705, 710, 1160, 1176 |
| TaaI | ACNGT | 4 cut(s) | 67, 373, 685, 853 |
| TaiI | ACGT | 5 cut(s) | 450, 918, 1224, 1573, 1618 |
| TaqI | TCGA | 5 cut(s) | 186, 490, 739, 904, 1558 |
| TatI | WGTACW | 2 cut(s) | 1386, 1455 |
| TfiI | GAWTC | 3 cut(s) | 408, 1118, 1337 |
| Tru1I | TTAA | 3 cut(s) | 504, 714, 1678 |
| Tru9I | TTAA | 3 cut(s) | 504, 714, 1678 |
| TscAI | CASTG | 2 cut(s) | 70, 690 |
| TseFI | GTSAC | 3 cut(s) | 508, 632, 847 |
| TseI | GCWGC | 3 cut(s) | 341, 599, 995 |
| Tsp45I | GTSAC | 3 cut(s) | 508, 632, 847 |
| TspGWI | ACGGA | 1 cut(s) | 527 |
| TspRI | CASTG | 2 cut(s) | 70, 690 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1244 |
| VpaK11BI | GGWCC | 1 cut(s) | 656 |
| XapI | RAATTY | 2 cut(s) | 168, 203 |
| XceI | RCATGY | 1 cut(s) | 481 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1129, 1245 |
| XspI | CTAG | 4 cut(s) | 705, 710, 1160, 1176 |
| ZrmI | AGTACT | 1 cut(s) | 1388 |