AT1G26380

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9126737 .. 9128568
1832 bp
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UTR
Exon/CDS
Intron
AT1G26380.1

Sequence Viewer

Length: 1608 bp
ATGAAAGAAGCACTTTTTGGTTTGTATCTTGTTCTTTTGGTTTCGGGCTTAGAAGCAGCAGTGACGAAACCAAATTCTGGAAACTTTATTGAATGCCTTCGGTATCAGGCTAGTCCGGAGAATCCAATCACCGATGCCATCTTTACCGTCGATAACACCACCACCTTCTTGTCTTCTTACGTGTCATACACGAAAAACACGAGGTTCTCGAACCCTAACAACAAAAACCTACTAGCCATCGTAGTGGCGAAAGATGTATCTCATGTTCAGGCAACGGTGGTCTGCGCAAAGTCCAATGGTATCCAGATCCGTATCCGAAGCGGTGGTCATGACAACGAAGGACTTTCTTACGTGTCGTCTGTGCCATTTGTCATTCTTGATATGCACAAACTGAGGGATATTACTGTCGACGTGTCAAGCAAGAAAGCATGGGTCCAAGCTGGTGCGACCTTGGGAGAGCTCTACGTGAAGATCGATGAGGCAAGCCAAACGTTAGCGTTCCCTGCTGGCATTTGCGCTACGGTAGGAGCTGGAGGACACATAAGCGGTGGAGGGTATGGAAATCTGATGAGAAAATTCGGAACCACAGTGGATCATGTCATTGATGCTGAATTAGTTGATGTCAACGGCAAGCTCTTGAATCGATCTACCATGGGAGAAGATCTCTTTTGGGCGATTCGCGGCGGTGGTGGTGCGAGTTTCGGAGTTATACTCTCTTGGAAAATAAACCTCGTGGAGGTTCCAAAGATCTTTACAGTGTTTCAGGTTAACAAAACATTGGAACAAGGAGGCACTGATGTTGTCTACAAGTGGCAGCTTGTCGCTAACAAATTCCCTGATAATCTTTTCTTGAGAGCAATGCCTCAGGTAGTAAATGGAACAAAACACGGCGAGAGAACCATCGCGATTGTATTCTGGGCTCAGTTCTTGGGTCGAACCGATGAGCTGATGGAGATAATGAACCAGAGCTTTCCTGAATTAGGGCTAAGACGTGAAGATTGTCAAGAAATGAGCTGGCTTAACACGACGTTGTTTTGGGCTATGTTACCAGCGGGTACTCCGAAGACCGTCCTTCTAGGTAGACCTACGGATCCAGTATTCTTTAAGAGTAAATCGGATTACGTCAAAAAGCCAATCCCCAAAGAAGGACTGGAGAAGATTTGGAAGACAATGTTGAAATTCAACAATATTGTGTGGCTGCACTTCAACCCTTACGGTGGAATGATGGATCGGATTCCGTCAAACGCCACAGCGTTTCCTCACCGGAAAGGAAACTTGTTCAAGGTTCAATACTATACCACATGGTTGGACCCAAACGCCACAGAGAGTAACCTGAGTATTATGAAGGAGCTCTACGAGGTTGCAGAACCGTACGTGTCAAGTAACCCGAGAGAGGCCTTCTTTAATTACAGAGACATTGATATTGGAAGCAATCCAAGCGGTGAGACAGACGTGGATGAGGCTAAGATCTATGGATACAAGTATTTCTTGGGGAATTTGAAGAGATTGATGGATGTTAAAGCTAAGAGTGATCCTGAGAATTTCTTCAAAAACGAACAGAGTATTCCCCCTCTTTTATCAAGGGTGAGGAGAGACGACGAATTGTAA

Protein Analysis

535

Amino Acids

59.82

Weight (kDa)

7.63

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 79 - 214 7.4e-26 FAD binding domain
BBE PF08031 466 - 523 2.4e-16 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 286
AccB7I CCANNNNNTGG 1 cut(s) 77
AccI GTMKAC 3 cut(s) 408, 804, 1081
AccII CGCG 2 cut(s) 681, 905
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 6 cut(s) 321, 546, 681, 684, 1052, 1440
AclI AACGTT 1 cut(s) 491
AclWI GGATC 6 cut(s) 301, 600, 1085, 1098, 1236, 1526
AcsI RAATTY 6 cut(s) 73, 575, 830, 1178, 1495, 1540
AfaI GTAC 2 cut(s) 1057, 1373
AfiI CCNNNNNNNGG 6 cut(s) 77, 736, 980, 1145, 1217, 1393
AflIII ACRYGT 4 cut(s) 180, 351, 411, 1374
AgsI TTSAA 9 cut(s) 92, 640, 1177, 1183, 1207, 1282, 1289, 1501, 1549
AjiI CACGTC 3 cut(s) 412, 992, 1453
AjuI GAANNNNNNNTTGG 1 cut(s) 32
Alw21I GWGCWC 2 cut(s) 462, 1353
Alw26I GTCTC 3 cut(s) 1407, 1439, 1587
AlwI GGATC 6 cut(s) 301, 600, 1085, 1098, 1236, 1526
Ama87I CYCGRG 1 cut(s) 1387
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 1 cut(s) 1395
ApeKI GCWGC 3 cut(s) 56, 814, 1198
ApoI RAATTY 6 cut(s) 73, 575, 830, 1178, 1495, 1540
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
Asp700I GAANNNNTTC 2 cut(s) 96, 1544
AspLEI GCGC 2 cut(s) 287, 518
AspS9I GGNCC 2 cut(s) 433, 1309
AsuHPI GGTGA 4 cut(s) 121, 1253, 1454, 1597
AvaI CYCGRG 1 cut(s) 1387
AvaII GGWCC 2 cut(s) 433, 1309
AxyI CCTNAGG 1 cut(s) 864
BamHI GGATCC 1 cut(s) 1090
BanII GRGCYC 3 cut(s) 462, 922, 1353
BarI GAAGNNNNNNTAC 2 cut(s) 1337, 1369
BauI CACGAG 2 cut(s) 199, 731
BbsI GAAGAC 3 cut(s) 165, 1070, 1172
Bbv12I GWGCWC 2 cut(s) 462, 1353
BbvI GCAGC 3 cut(s) 68, 826, 1185
BccI CCATC 6 cut(s) 146, 245, 908, 943, 1219, 1504
BceAI ACGGC 2 cut(s) 643, 904
BciVI GTATCC 3 cut(s) 311, 323, 1469
BcoDI GTCTC 3 cut(s) 1407, 1439, 1587
BfaI CTAG 3 cut(s) 111, 233, 1076
BfuI GTATCC 3 cut(s) 311, 323, 1469
BglII AGATCT 3 cut(s) 661, 747, 1467
BisI GCNGC 4 cut(s) 57, 682, 815, 1199
BlsI GCNGC 4 cut(s) 58, 683, 816, 1200
Bme18I GGWCC 2 cut(s) 433, 1309
BmeT110I CYCGRG 1 cut(s) 1387
BmgBI CACGTC 3 cut(s) 412, 992, 1453
BmgT120I GGNCC 2 cut(s) 433, 1309
BmiI GGNNCC 5 cut(s) 434, 583, 741, 1092, 1311
BmsI GCATC 2 cut(s) 124, 595
BpiI GAAGAC 3 cut(s) 165, 1070, 1172
BplI GAGNNNNNCTC 4 cut(s) 648, 680, 696, 728
BpmI CTGGAG 2 cut(s) 552, 1172
BpuEI CTTGAG 1 cut(s) 871
Bsa29I ATCGAT 2 cut(s) 474, 643
BsaAI YACGTR 4 cut(s) 181, 352, 466, 1375
BsaBI GATNNNNATC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 450, 651
BsaWI WCCGGW 2 cut(s) 115, 1263
Bsc4I CCNNNNNNNGG 6 cut(s) 77, 736, 980, 1145, 1217, 1393
Bse1I ACTGG 2 cut(s) 1094, 1155
Bse21I CCTNAGG 1 cut(s) 864
Bse3DI GCAATG 1 cut(s) 864
Bse8I GATNNNNATC 1 cut(s) 311
BseAI TCCGGA 1 cut(s) 115
BseCI ATCGAT 2 cut(s) 474, 643
BseDI CCNNGG 2 cut(s) 450, 651
BseGI GGATG 2 cut(s) 1462, 1519
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 6 cut(s) 77, 736, 980, 1145, 1217, 1393
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 5 cut(s) 383, 878, 935, 1325, 1527
BseNI ACTGG 2 cut(s) 1094, 1155
BseRI GAGGAG 1 cut(s) 1603
BseXI GCAGC 3 cut(s) 68, 826, 1185
BsgI GTGCAG 1 cut(s) 1184
Bsh1236I CGCG 2 cut(s) 681, 905
BshFI GGCC 1 cut(s) 1397
BshVI ATCGAT 2 cut(s) 474, 643
BsiHKAI GWGCWC 2 cut(s) 462, 1353
BsiHKCI CYCGRG 1 cut(s) 1387
BsiSI CCGG 2 cut(s) 116, 1264
BsiWI CGTACG 1 cut(s) 1371
BslI CCNNNNNNNGG 6 cut(s) 77, 736, 980, 1145, 1217, 1393
BsmAI GTCTC 3 cut(s) 1407, 1439, 1587
BsmBI CGTCTC 1 cut(s) 1587
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 1 cut(s) 1397
BsoBI CYCGRG 1 cut(s) 1387
Bsp1286I GDGCHC 3 cut(s) 462, 922, 1353
Bsp13I TCCGGA 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 651
Bsp68I TCGCGA 1 cut(s) 905
BspACI CCGC 6 cut(s) 321, 546, 681, 684, 1052, 1440
BspANI GGCC 1 cut(s) 1397
BspCNI CTCAG 5 cut(s) 384, 877, 934, 1326, 1528
BspDI ATCGAT 2 cut(s) 474, 643
BspEI TCCGGA 1 cut(s) 115
BspFNI CGCG 2 cut(s) 681, 905
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 5 cut(s) 434, 583, 741, 1092, 1311
BspPI GGATC 6 cut(s) 301, 600, 1085, 1098, 1236, 1526
BsrDI GCAATG 1 cut(s) 864
BsrI ACTGG 2 cut(s) 1094, 1155
BssECI CCNNGG 2 cut(s) 450, 651
BssSI CACGAG 2 cut(s) 199, 731
BssT1I CCWWGG 2 cut(s) 450, 651
Bst2BI CACGAG 2 cut(s) 199, 731
Bst4CI ACNGT 9 cut(s) 148, 277, 406, 523, 589, 757, 1069, 1217, 1371
Bst6I CTCTTC 1 cut(s) 1496
BstBAI YACGTR 4 cut(s) 181, 352, 466, 1375
BstC8I GCNNGC 4 cut(s) 484, 508, 632, 1016
BstDEI CTNAG 9 cut(s) 49, 392, 864, 921, 986, 1334, 1464, 1524, 1536
BstDSI CCRYGG 1 cut(s) 651
BstENI CCTNNNNNAGG 2 cut(s) 734, 978
BstF5I GGATG 2 cut(s) 1462, 1519
BstFNI CGCG 2 cut(s) 681, 905
BstHHI GCGC 2 cut(s) 287, 518
BstMAI GTCTC 3 cut(s) 1407, 1439, 1587
BstMWI GCNNNNNNNGC 2 cut(s) 503, 1437
BstUI CGCG 2 cut(s) 681, 905
BstV1I GCAGC 3 cut(s) 68, 826, 1185
BstV2I GAAGAC 3 cut(s) 165, 1070, 1172
BstX2I RGATCY 5 cut(s) 306, 661, 747, 1090, 1467
BstXI CCANNNNNNTGG 2 cut(s) 244, 1306
BstYI RGATCY 5 cut(s) 306, 661, 747, 1090, 1467
Bsu15I ATCGAT 2 cut(s) 474, 643
Bsu36I CCTNAGG 1 cut(s) 864
BsuI GTATCC 3 cut(s) 311, 323, 1469
BsuRI GGCC 1 cut(s) 1397
BsuTUI ATCGAT 2 cut(s) 474, 643
BtgI CCRYGG 1 cut(s) 651
BtgZI GCGATG 1 cut(s) 886
BtrI CACGTC 3 cut(s) 412, 992, 1453
BtsCI GGATG 2 cut(s) 1462, 1519
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 4 cut(s) 66, 594, 762, 792
BtuMI TCGCGA 1 cut(s) 905
Cac8I GCNNGC 4 cut(s) 484, 508, 632, 1016
CciI TCATGA 1 cut(s) 328
CfoI GCGC 2 cut(s) 287, 518
Cfr13I GGNCC 2 cut(s) 433, 1309
ClaI ATCGAT 2 cut(s) 474, 643
Csp6I GTAC 2 cut(s) 1056, 1372
CviAII CATG 6 cut(s) 263, 329, 429, 596, 652, 1302
CviQI GTAC 2 cut(s) 1056, 1372
DdeI CTNAG 9 cut(s) 49, 392, 864, 921, 986, 1334, 1464, 1524, 1536
Eam1104I CTCTTC 1 cut(s) 1496
EarI CTCTTC 1 cut(s) 1496
Ecl136II GAGCTC 2 cut(s) 460, 1351
Eco130I CCWWGG 2 cut(s) 450, 651
Eco147I AGGCCT 1 cut(s) 1397
Eco24I GRGCYC 3 cut(s) 462, 922, 1353
Eco47I GGWCC 2 cut(s) 433, 1309
Eco53kI GAGCTC 2 cut(s) 460, 1351
Eco81I CCTNAGG 1 cut(s) 864
Eco88I CYCGRG 1 cut(s) 1387
EcoICRI GAGCTC 2 cut(s) 460, 1351
EcoNI CCTNNNNNAGG 2 cut(s) 734, 978
EcoT14I CCWWGG 2 cut(s) 450, 651
EcoT38I GRGCYC 3 cut(s) 462, 922, 1353
ErhI CCWWGG 2 cut(s) 450, 651
Esp3I CGTCTC 1 cut(s) 1587
FaeI CATG 6 cut(s) 266, 332, 432, 599, 655, 1305
FalI AAGNNNNNCTT 3 cut(s) 29, 1472, 1504
FatI CATG 6 cut(s) 262, 328, 428, 595, 651, 1301
FauI CCCGC 1 cut(s) 1045
FblI GTMKAC 3 cut(s) 408, 804, 1081
Fnu4HI GCNGC 4 cut(s) 57, 682, 815, 1199
FokI GGATG 2 cut(s) 1469, 1526
FriOI GRGCYC 3 cut(s) 462, 922, 1353
Fsp4HI GCNGC 4 cut(s) 57, 682, 815, 1199
FspBI CTAG 3 cut(s) 111, 233, 1076
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 2 cut(s) 286, 517
GluI GCNGC 4 cut(s) 57, 682, 815, 1199
GsuI CTGGAG 2 cut(s) 552, 1172
HaeIII GGCC 1 cut(s) 1397
HapII CCGG 2 cut(s) 116, 1264
HhaI GCGC 2 cut(s) 287, 518
Hin1II CATG 6 cut(s) 266, 332, 432, 599, 655, 1305
Hin6I GCGC 2 cut(s) 285, 516
HinP1I GCGC 2 cut(s) 285, 516
HincII GTYRAC 3 cut(s) 409, 625, 769
HindII GTYRAC 3 cut(s) 409, 625, 769
HinfI GANTC 4 cut(s) 121, 640, 676, 1234
HpaI GTTAAC 1 cut(s) 769
HpaII CCGG 2 cut(s) 116, 1264
HphI GGTGA 4 cut(s) 121, 1253, 1454, 1597
Hpy166II GTNNAC 5 cut(s) 409, 625, 769, 805, 1082
Hpy188I TCNGA 7 cut(s) 317, 567, 581, 704, 1062, 1117, 1233
Hpy8I GTNNAC 5 cut(s) 409, 625, 769, 805, 1082
Hpy99I CGWCG 4 cut(s) 152, 413, 1030, 1601
HpyAV CCTTC 7 cut(s) 107, 175, 332, 1082, 1139, 1339, 1408
HpyCH4III ACNGT 9 cut(s) 148, 277, 406, 523, 589, 757, 1069, 1217, 1371
HpyCH4V TGCA 3 cut(s) 385, 1201, 1364
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 1437
HpyF3I CTNAG 9 cut(s) 49, 392, 864, 921, 986, 1334, 1464, 1524, 1536
Hsp92II CATG 6 cut(s) 266, 332, 432, 599, 655, 1305
HspAI GCGC 2 cut(s) 285, 516
Kpn2I TCCGGA 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 769
LmnI GCTCC 2 cut(s) 527, 1348
Lsp1109I GCAGC 3 cut(s) 68, 826, 1185
LweI GCATC 2 cut(s) 124, 595
MaeI CTAG 3 cut(s) 111, 233, 1076
MaeIII GTNAC 4 cut(s) 61, 1044, 1328, 1382
MboII GAAGA 9 cut(s) 165, 481, 671, 1007, 1075, 1168, 1177, 1513, 1537
MflI RGATCY 5 cut(s) 306, 661, 747, 1090, 1467
MhlI GDGCHC 3 cut(s) 462, 922, 1353
MmeI TCCRAC 1 cut(s) 1287
MroI TCCGGA 1 cut(s) 115
MroXI GAANNNNTTC 2 cut(s) 96, 1544
MseI TTAA 5 cut(s) 768, 1020, 1104, 1404, 1518
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 1052
MspI CCGG 2 cut(s) 116, 1264
Mva1269I GAATGC 1 cut(s) 98
MvnI CGCG 2 cut(s) 681, 905
MwoI GCNNNNNNNGC 2 cut(s) 503, 1437
NcoI CCATGG 1 cut(s) 651
NlaIII CATG 6 cut(s) 266, 332, 432, 599, 655, 1305
NlaIV GGNNCC 5 cut(s) 434, 583, 741, 1092, 1311
NmuCI GTSAC 1 cut(s) 61
NruI TCGCGA 1 cut(s) 905
NsbI TGCGCA 1 cut(s) 286
PagI TCATGA 1 cut(s) 328
PceI AGGCCT 1 cut(s) 1397
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 206, 471
PctI GAATGC 1 cut(s) 98
PdmI GAANNNNTTC 2 cut(s) 96, 1544
PfeI GAWTC 4 cut(s) 121, 640, 676, 1234
Pfl23II CGTACG 1 cut(s) 1371
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 4 cut(s) 58, 683, 816, 1200
Ppu21I YACGTR 4 cut(s) 181, 352, 466, 1375
Psp124BI GAGCTC 2 cut(s) 462, 1353
Psp1406I AACGTT 1 cut(s) 491
PspLI CGTACG 1 cut(s) 1371
PspN4I GGNNCC 5 cut(s) 434, 583, 741, 1092, 1311
PspPI GGNCC 2 cut(s) 433, 1309
PsrI GAACNNNNNNTAC 2 cut(s) 249, 281
PsuI RGATCY 5 cut(s) 306, 661, 747, 1090, 1467
RruI TCGCGA 1 cut(s) 905
RsaI GTAC 2 cut(s) 1057, 1373
RsaNI GTAC 2 cut(s) 1056, 1372
RseI CAYNNNNRTG 1 cut(s) 242
SacI GAGCTC 2 cut(s) 462, 1353
SalI GTCGAC 1 cut(s) 407
SaqAI TTAA 5 cut(s) 768, 1020, 1104, 1404, 1518
SatI GCNGC 4 cut(s) 57, 682, 815, 1199
Sau96I GGNCC 2 cut(s) 433, 1309
SduI GDGCHC 3 cut(s) 462, 922, 1353
SfaNI GCATC 2 cut(s) 124, 595
SinI GGWCC 2 cut(s) 433, 1309
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 850
SmoI CTYRAG 1 cut(s) 850
SseBI AGGCCT 1 cut(s) 1397
SsiI CCGC 6 cut(s) 321, 546, 681, 684, 1052, 1440
SspI AATATT 1 cut(s) 1189
SspMI CTAG 3 cut(s) 111, 233, 1076
SstI GAGCTC 2 cut(s) 462, 1353
StuI AGGCCT 1 cut(s) 1397
StyI CCWWGG 2 cut(s) 450, 651
TaaI ACNGT 9 cut(s) 148, 277, 406, 523, 589, 757, 1069, 1217, 1371
TaqI TCGA 6 cut(s) 150, 209, 408, 474, 643, 934
TauI GCSGC 1 cut(s) 684
TfiI GAWTC 4 cut(s) 121, 640, 676, 1234
Tru1I TTAA 5 cut(s) 768, 1020, 1104, 1404, 1518
Tru9I TTAA 5 cut(s) 768, 1020, 1104, 1404, 1518
TscAI CASTG 4 cut(s) 66, 594, 762, 799
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 3 cut(s) 56, 814, 1198
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 17, 974, 1358
TspGWI ACGGA 3 cut(s) 299, 1103, 1227
TspRI CASTG 4 cut(s) 66, 594, 762, 799
Van91I CCANNNNNTGG 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 433, 1309
XagI CCTNNNNNAGG 2 cut(s) 734, 978
XapI RAATTY 6 cut(s) 73, 575, 830, 1178, 1495, 1540
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XmiI GTMKAC 3 cut(s) 408, 804, 1081
XmnI GAANNNNTTC 2 cut(s) 96, 1544
XspI CTAG 3 cut(s) 111, 233, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.