RLG00000032314

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000956
Physical Location & Seq
Reverse (-)
13451216 .. 13454006
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032314

Sequence Viewer

Length: 1047 bp
ATGTTTTACCTTCGAGAGATTGATGTTAACATCGCAGATGAAAGTGCTTGGGTTGGATCTGGAGCTATTGTTGGAGAACTATACTATAGCATTGCAGAAAAAAGCAAAGTTCATGCATTTCCTGGGGGAGTTTGCCCGAGTGTTGGTGTCGGTGGCCTTTTTAATGGTGGTGGGTACGGTCCTACTATGAGAAAATTTGGGCTTACAGTGGACAACATAGTAGATGCTAGACTAGTCAATGTGAATGGTACAATCCTTGATAGAAAATCCATGGGAGAAGACCTATTTTGGGCCATTAAAGGAGGTGGTGGAGCAAGCTTTGGAGTCATTCTTTCATGGAAGATCAAATTGCTTCAAGTTCCATCCGTTGTCACTGTTTTCAGAATTACAAAGACACTGGAGCAAGGCGCTACGGATGTTCTTCACAGGTGGCAATACGTTGCGCCTAACCTACCTAAAGAACTCTTCATTAGAGCAACTTCAAAAGTCCAGAATAGTACTGCCGAAGCAGGAAAGAAGACTGTGGGAGTGGTATTCAATGGTCTCTATCTAGGACAACGGGAAAACCTTCTTCCTTTAGTAAGTGACTGTTTCCCTGAATTGGGTTTGGAGCAAAAAGACTGCTTCGAAATGAGTTGGATTGAATCCACCTTATTCTTTTCCGAATACGCATTTGGAACTCCCATAAAGGTTCTAGTAAAAAGACCAACGGAACCACCTCCATTCTTCTTCGAAGGCAAGTCGGATTATGTAAAACAACCAATTCCGAAAGAGGTCTTGAAGTCGATATTCGAGAAGATGATCAATCGATACGAGTCGACGCACATGCAATGGAACCCATATAGTGGAAGAATGAATGAGATTTCCAAGTCGGAAACTCCATTCCCTCACAGAGCAGGAAACCTATTTATGATTCAGTACTGGACGTATTGGATGGAAAAAGGGATTGAGAGCACCAACAAGTACCTTAACTCGTCGAGAAATTTGTACGGAAGAGATGGGGGTGAGATGGTTGGACCTGGACGCATGGCAGCTCTCGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

349

Amino Acids

38.94

Weight (kDa)

7.64

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 7 - 86 1.7e-11 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 845
AccI GTMKAC 1 cut(s) 818
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 194, 982
AfaI GTAC 6 cut(s) 176, 250, 499, 920, 965, 989
AfiI CCNNNNNNNGG 5 cut(s) 143, 289, 601, 602, 845
AgsI TTSAA 5 cut(s) 356, 483, 538, 644, 781
AhlI ACTAGT 1 cut(s) 232
AjnI CCWGG 2 cut(s) 121, 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 3 cut(s) 65, 318, 1034
AluI AGCT 3 cut(s) 65, 318, 1034
Alw21I GWGCWC 1 cut(s) 956
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 2 cut(s) 136, 1037
AoxI GGCC 2 cut(s) 154, 291
ApeKI GCWGC 1 cut(s) 1031
ApoI RAATTY 2 cut(s) 194, 982
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 2 cut(s) 410, 445
AspS9I GGNCC 3 cut(s) 179, 291, 1016
AsuHPI GGTGA 1 cut(s) 1016
AsuII TTCGAA 2 cut(s) 627, 732
AvaI CYCGRG 2 cut(s) 136, 1037
AvaII GGWCC 2 cut(s) 179, 1016
BbsI GAAGAC 2 cut(s) 285, 524
Bbv12I GWGCWC 1 cut(s) 956
BbvI GCAGC 1 cut(s) 1043
BccI CCATC 4 cut(s) 370, 928, 992, 1003
BcgI CGANNNNNNTGC 2 cut(s) 808, 842
BciT130I CCWGG 2 cut(s) 123, 1020
BclI TGATCA 1 cut(s) 801
BcoDI GTCTC 1 cut(s) 548
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 4 cut(s) 228, 233, 551, 695
BfmI CTRYAG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 411
BisI GCNGC 1 cut(s) 1032
BlsI GCNGC 1 cut(s) 1033
BmcAI AGTACT 2 cut(s) 499, 920
Bme1390I CCNGG 2 cut(s) 123, 1020
Bme18I GGWCC 2 cut(s) 179, 1016
BmeT110I CYCGRG 2 cut(s) 136, 1037
BmgT120I GGNCC 3 cut(s) 179, 291, 1016
BmiI GGNNCC 2 cut(s) 714, 836
BmrFI CCNGG 2 cut(s) 123, 1020
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 2 cut(s) 285, 524
BpmI CTGGAG 2 cut(s) 81, 419
Bpu14I TTCGAA 2 cut(s) 627, 732
Bsa29I ATCGAT 1 cut(s) 808
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 122, 270
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 289, 601, 602, 845
Bse1I ACTGG 2 cut(s) 402, 926
Bse3DI GCAATG 2 cut(s) 90, 836
BseBI CCWGG 2 cut(s) 123, 1020
BseCI ATCGAT 1 cut(s) 808
BseDI CCNNGG 2 cut(s) 122, 270
BseGI GGATG 3 cut(s) 362, 421, 939
BseLI CCNNNNNNNGG 5 cut(s) 143, 289, 601, 602, 845
BseMI GCAATG 2 cut(s) 90, 836
BseNI ACTGG 2 cut(s) 402, 926
BseXI GCAGC 1 cut(s) 1043
BshFI GGCC 2 cut(s) 156, 293
BshVI ATCGAT 1 cut(s) 808
BsiHKAI GWGCWC 1 cut(s) 956
BsiHKCI CYCGRG 2 cut(s) 136, 1037
BslI CCNNNNNNNGG 5 cut(s) 143, 289, 601, 602, 845
BsmAI GTCTC 1 cut(s) 548
BsnI GGCC 2 cut(s) 156, 293
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 2 cut(s) 136, 1037
Bsp119I TTCGAA 2 cut(s) 627, 732
Bsp1286I GDGCHC 1 cut(s) 956
Bsp143I GATC 3 cut(s) 56, 342, 801
Bsp19I CCATGG 1 cut(s) 270
BspANI GGCC 2 cut(s) 156, 293
BspDI ATCGAT 1 cut(s) 808
BspLI GGNNCC 2 cut(s) 714, 836
BspPI GGATC 1 cut(s) 64
BspT104I TTCGAA 2 cut(s) 627, 732
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 90, 836
BsrI ACTGG 2 cut(s) 402, 926
BssECI CCNNGG 2 cut(s) 122, 270
BssMI GATC 3 cut(s) 56, 342, 801
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 123, 1020
Bst4CI ACNGT 5 cut(s) 179, 208, 376, 523, 590
Bst6I CTCTTC 2 cut(s) 470, 988
BstBI TTCGAA 2 cut(s) 627, 732
BstC8I GCNNGC 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 362, 421, 939
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 2 cut(s) 410, 445
BstKTI GATC 3 cut(s) 59, 345, 804
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 3 cut(s) 56, 342, 801
BstNI CCWGG 2 cut(s) 123, 1020
BstNSI RCATGY 1 cut(s) 829
BstSCI CCNGG 2 cut(s) 121, 1018
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 1043
BstV2I GAAGAC 2 cut(s) 285, 524
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
Bsu15I ATCGAT 1 cut(s) 808
BsuRI GGCC 2 cut(s) 156, 293
BsuTUI ATCGAT 1 cut(s) 808
BtgI CCRYGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 16
BtsCI GGATG 3 cut(s) 362, 421, 939
BtsIMutI CAGTG 3 cut(s) 213, 372, 395
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 2 cut(s) 410, 445
Cfr13I GGNCC 3 cut(s) 179, 291, 1016
ClaI ATCGAT 1 cut(s) 808
CseI GACGC 2 cut(s) 829, 1032
Csp6I GTAC 6 cut(s) 175, 249, 498, 919, 964, 988
CviAII CATG 5 cut(s) 113, 271, 336, 826, 1027
CviJI RGCY 6 cut(s) 65, 156, 202, 293, 318, 1034
CviKI_1 RGCY 6 cut(s) 65, 156, 202, 293, 318, 1034
CviQI GTAC 6 cut(s) 175, 249, 498, 919, 964, 988
DpnI GATC 3 cut(s) 58, 344, 803
DpnII GATC 3 cut(s) 56, 342, 801
Eam1104I CTCTTC 2 cut(s) 470, 988
EarI CTCTTC 2 cut(s) 470, 988
Eco130I CCWWGG 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 179, 1016
Eco88I CYCGRG 2 cut(s) 136, 1037
EcoRII CCWGG 2 cut(s) 121, 1018
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 5 cut(s) 116, 274, 339, 829, 1030
FatI CATG 5 cut(s) 112, 270, 335, 825, 1026
FbaI TGATCA 1 cut(s) 801
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 1 cut(s) 1032
FokI GGATG 3 cut(s) 349, 428, 946
Fsp4HI GCNGC 1 cut(s) 1032
FspBI CTAG 4 cut(s) 228, 233, 551, 695
GlaI GCGC 2 cut(s) 409, 444
GluI GCNGC 1 cut(s) 1032
GsuI CTGGAG 2 cut(s) 81, 419
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 2 cut(s) 156, 293
HgaI GACGC 2 cut(s) 829, 1032
HhaI GCGC 2 cut(s) 410, 445
Hin1II CATG 5 cut(s) 116, 274, 339, 829, 1030
Hin6I GCGC 2 cut(s) 408, 443
HinP1I GCGC 2 cut(s) 408, 443
HincII GTYRAC 2 cut(s) 28, 819
HindII GTYRAC 2 cut(s) 28, 819
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 4 cut(s) 324, 644, 815, 913
HpaI GTTAAC 1 cut(s) 28
HphI GGTGA 1 cut(s) 1016
Hpy166II GTNNAC 3 cut(s) 28, 211, 819
Hpy188I TCNGA 5 cut(s) 383, 664, 745, 768, 874
Hpy188III TCNNGA 7 cut(s) 14, 60, 490, 778, 793, 978, 1037
Hpy8I GTNNAC 3 cut(s) 28, 211, 819
Hpy99I CGWCG 2 cut(s) 823, 979
HpyAV CCTTC 3 cut(s) 20, 578, 728
HpyCH4III ACNGT 5 cut(s) 179, 208, 376, 523, 590
HpyCH4IV ACGT 2 cut(s) 438, 926
HpyCH4V TGCA 3 cut(s) 95, 116, 829
HpySE526I ACGT 2 cut(s) 438, 926
Hsp92II CATG 5 cut(s) 116, 274, 339, 829, 1030
HspAI GCGC 2 cut(s) 408, 443
Ksp22I TGATCA 1 cut(s) 801
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 3 cut(s) 56, 342, 801
LmnI GCTCC 4 cut(s) 62, 311, 400, 610
Lsp1109I GCAGC 1 cut(s) 1043
LweI GCATC 1 cut(s) 214
MaeI CTAG 4 cut(s) 228, 233, 551, 695
MaeII ACGT 2 cut(s) 438, 926
MaeIII GTNAC 2 cut(s) 370, 584
MalI GATC 3 cut(s) 58, 344, 803
MboI GATC 3 cut(s) 56, 342, 801
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 956
MluCI AATT 6 cut(s) 194, 347, 384, 599, 762, 982
MlyI GAGTC 2 cut(s) 333, 824
MmeI TCCRAC 6 cut(s) 34, 52, 617, 723, 852, 994
MnlI CCTC 5 cut(s) 296, 729, 766, 897, 1033
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 4 cut(s) 27, 162, 297, 969
MspR9I CCNGG 2 cut(s) 123, 1020
MvaI CCWGG 2 cut(s) 123, 1020
NcoI CCATGG 1 cut(s) 270
NdeII GATC 3 cut(s) 56, 342, 801
NlaIII CATG 5 cut(s) 116, 274, 339, 829, 1030
NlaIV GGNNCC 2 cut(s) 714, 836
NmuCI GTSAC 2 cut(s) 370, 584
NsiI ATGCAT 1 cut(s) 118
NspI RCATGY 1 cut(s) 829
NspV TTCGAA 2 cut(s) 627, 732
PaeR7I CTCGAG 1 cut(s) 1037
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 644, 913
PflMI CCANNNNNTGG 1 cut(s) 845
PkrI GCNGC 1 cut(s) 1033
PleI GAGTC 2 cut(s) 332, 823
PpsI GAGTC 2 cut(s) 332, 823
Psp6I CCWGG 2 cut(s) 121, 1018
PspGI CCWGG 2 cut(s) 121, 1018
PspN4I GGNNCC 2 cut(s) 714, 836
PspPI GGNCC 3 cut(s) 179, 291, 1016
PsuI RGATCY 1 cut(s) 56
RsaI GTAC 6 cut(s) 176, 250, 499, 920, 965, 989
RsaNI GTAC 6 cut(s) 175, 249, 498, 919, 964, 988
SalI GTCGAC 1 cut(s) 817
SaqAI TTAA 4 cut(s) 27, 162, 297, 969
SatI GCNGC 1 cut(s) 1032
Sau3AI GATC 3 cut(s) 56, 342, 801
Sau96I GGNCC 3 cut(s) 179, 291, 1016
ScaI AGTACT 2 cut(s) 499, 920
SchI GAGTC 2 cut(s) 333, 824
ScrFI CCNGG 2 cut(s) 123, 1020
SduI GDGCHC 1 cut(s) 956
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 85
Sfr274I CTCGAG 1 cut(s) 1037
SfuI TTCGAA 2 cut(s) 627, 732
SinI GGWCC 2 cut(s) 179, 1016
SlaI CTCGAG 1 cut(s) 1037
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
SpeI ACTAGT 1 cut(s) 232
Sse9I AATT 6 cut(s) 194, 347, 384, 599, 762, 982
SspMI CTAG 4 cut(s) 228, 233, 551, 695
StyD4I CCNGG 2 cut(s) 121, 1018
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 5 cut(s) 179, 208, 376, 523, 590
TaiI ACGT 2 cut(s) 441, 929
TaqI TCGA 9 cut(s) 13, 627, 732, 785, 792, 808, 818, 977, 1038
TasI AATT 6 cut(s) 194, 347, 384, 599, 762, 982
TatI WGTACW 2 cut(s) 497, 918
TfiI GAWTC 2 cut(s) 644, 913
Tru1I TTAA 4 cut(s) 27, 162, 297, 969
Tru9I TTAA 4 cut(s) 27, 162, 297, 969
TscAI CASTG 3 cut(s) 213, 379, 402
TseFI GTSAC 2 cut(s) 370, 584
TseI GCWGC 1 cut(s) 1031
Tsp45I GTSAC 2 cut(s) 370, 584
TspDTI ATGAA 5 cut(s) 54, 101, 324, 457, 869
TspGWI ACGGA 4 cut(s) 355, 428, 725, 1005
TspRI CASTG 3 cut(s) 213, 379, 402
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 2 cut(s) 179, 1016
XapI RAATTY 2 cut(s) 194, 982
XceI RCATGY 1 cut(s) 829
XhoI CTCGAG 1 cut(s) 1037
XmiI GTMKAC 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 4 cut(s) 228, 233, 551, 695
ZrmI AGTACT 2 cut(s) 499, 920
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.