Rmu_sc0013814.1_g000002

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013814.1
OG0000956
Physical Location & Seq
Forward (+)
7795 .. 9393
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013814.1_g000002.1.cds

Sequence Viewer

Length: 1599 bp
atgaagttgccaagttctttagcagtagttctcttcattctctcaaccctttggctctcaactacttcaaatcccattctcgaaaacttcctgaaatgccttccagaacagactcactccaactacatctctgaagccgtttacacccgccaaaatgccacttttgaatccgttctgctggcatacatcagaaacggcagatatttaacccctacaactccgaaaccagtggctattgtaacagccaagcatgaatcccatgtgcaagcaactgtgatctgtgcaaagcggcacggtttgcagattagaatccgaagtggaggccacgattacgagggtctatcttacgtgtcacatgtcccctttgttattcttgacatgtttcatctccgcgccattcacgttgatgtcgcggatgagagtgcttgggttgagtctggggctattatgggtgaactttactacgaaatcgcaaagaacagtaaagttcatgggttttcagctggaatttgtccaactatcggtgttggtggtcactttagtggcggtgggtatggtgtcatgatgagaaaatatgggctcacagtggataacattgaagatgctaaactagttaatgtgaatggtacagttcttgatagaaagtctatgggagaagatcttttttgggccattagaggaggtggtggagcaagctttggagtcattttgtcatggaaaataaagctgcttccagtgccagccaaagtgactgtattcaacatcggaagggcccttgagcaaggcgctacagatgttctttaccggtggcaacacgtcgcacctaagctacctaaagaaatcttcatcagagcagtgcctcaagtgttgaattctagttttggtaacaagactgtggaagtgtcattcattggtttcttcttgggacgaagtgatgagcttctttcattgataaataggagtcttcctgaattgggtttgcagaaaacagattgctatgaaatgagttgggtagaatctacggtattttgggctaattctgattacccagttgcaacttccatagacgatctacttgaaaggcccaaggggccaataggcaacttcaaaggcaagtctgactatgtgaaagaaccaattccaaaacaaggcatagaattcatattgaaggagctactcaagatagaaaacgtggggatgcaatggaccccttacggtggaagaatgagtgagatttctgagtcggaaactcccttccctcacagagccggaaatctgttcatgattcattattctacgtcgtggaaggaagaagggattgaggccaccaacaagtaccttagcttatctagattttacaaaataatgactccatttgtatccaagagaccaagagaggccttccaaaactacagggatcttgacattggggccaatttggataatcagaccatctttaatattgctacagtctatggaagcaaatactttgaaggtaattttgaaaggctagtacatgtgaagtccgaggtcgatccgcaaaactttttcaagcatgaacaaagtattccacctcttgcccaatatcatttagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

532

Amino Acids

59.71

Weight (kDa)

7.28

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 393, 413
AciI CCGC 6 cut(s) 148, 289, 391, 413, 546, 1538
AclWI GGATC 2 cut(s) 1425, 1529
AcsI RAATTY 3 cut(s) 507, 871, 1157
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 3 cut(s) 628, 1337, 1515
AfiI CCNNNNNNNGG 4 cut(s) 521, 974, 1148, 1217
AflIII ACRYGT 5 cut(s) 348, 355, 378, 814, 1516
AgeI ACCGGT 1 cut(s) 804
AhlI ACTAGT 1 cut(s) 610
AjiI CACGTC 1 cut(s) 817
AleI CACNNNNGTG 1 cut(s) 540
AluBI AGCT 7 cut(s) 503, 696, 727, 829, 940, 1174, 1344
AluI AGCT 7 cut(s) 503, 696, 727, 829, 940, 1174, 1344
Alw26I GTCTC 1 cut(s) 1381
AlwI GGATC 2 cut(s) 1425, 1529
AoxI GGCC 8 cut(s) 322, 669, 771, 1082, 1091, 1323, 1398, 1431
ApaI GGGCCC 1 cut(s) 775
ApeKI GCWGC 1 cut(s) 727
ApoI RAATTY 3 cut(s) 507, 871, 1157
AsiGI ACCGGT 1 cut(s) 804
Asp700I GAANNNNTTC 2 cut(s) 171, 1137
AspLEI GCGC 2 cut(s) 395, 788
AspS9I GGNCC 7 cut(s) 669, 771, 772, 1083, 1091, 1206, 1431
AsuHPI GGTGA 1 cut(s) 464
AvaII GGWCC 1 cut(s) 1206
BaeGI GKGCMC 1 cut(s) 775
BanII GRGCYC 2 cut(s) 582, 775
BbsI GAAGAC 1 cut(s) 956
BbvI GCAGC 1 cut(s) 714
BccI CCATC 1 cut(s) 1460
BceAI ACGGC 2 cut(s) 122, 211
BciVI GTATCC 1 cut(s) 1390
BcoDI GTCTC 1 cut(s) 1381
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 4 cut(s) 611, 876, 1350, 1511
BfmI CTRYAG 3 cut(s) 789, 1411, 1467
BfoI RGCGCY 1 cut(s) 789
BfuI GTATCC 1 cut(s) 1390
BglI GCCNNNNNGGC 1 cut(s) 1090
BglII AGATCT 1 cut(s) 658
BisI GCNGC 2 cut(s) 290, 728
BlsI GCNGC 2 cut(s) 291, 729
Bme18I GGWCC 1 cut(s) 1206
BmgBI CACGTC 1 cut(s) 817
BmgT120I GGNCC 7 cut(s) 669, 771, 772, 1083, 1091, 1206, 1431
BmiI GGNNCC 4 cut(s) 773, 1092, 1208, 1432
BmrI ACTGGG 1 cut(s) 1043
BmsI GCATC 2 cut(s) 592, 1188
BmuI ACTGGG 1 cut(s) 1043
BpiI GAAGAC 1 cut(s) 956
Bpu10I CCTNAGC 2 cut(s) 825, 1340
BpuEI CTTGAG 3 cut(s) 797, 846, 1163
BsaAI YACGTR 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 1381
BsaJI CCNNGG 2 cut(s) 1086, 1527
BsaWI WCCGGW 1 cut(s) 804
Bsc4I CCNNNNNNNGG 4 cut(s) 521, 974, 1148, 1217
Bse118I RCCGGY 1 cut(s) 804
Bse1I ACTGG 3 cut(s) 227, 734, 1049
Bse3DI GCAATG 1 cut(s) 1208
Bse8I GATNNNNATC 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 1086, 1527
BseGI GGATG 2 cut(s) 421, 1203
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 4 cut(s) 521, 974, 1148, 1217
BseMI GCAATG 1 cut(s) 1208
BseMII CTCAG 1 cut(s) 1230
BseNI ACTGG 3 cut(s) 227, 734, 1049
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 1 cut(s) 714
Bsh1236I CGCG 2 cut(s) 393, 413
BshFI GGCC 8 cut(s) 324, 671, 773, 1084, 1093, 1325, 1400, 1433
BshTI ACCGGT 1 cut(s) 804
BsiSI CCGG 2 cut(s) 805, 1269
BslFI GGGAC 2 cut(s) 344, 939
BslI CCNNNNNNNGG 4 cut(s) 521, 974, 1148, 1217
BsmAI GTCTC 1 cut(s) 1381
BsmFI GGGAC 2 cut(s) 344, 939
BsnI GGCC 8 cut(s) 324, 671, 773, 1084, 1093, 1325, 1400, 1433
Bso31I GGTCTC 1 cut(s) 1381
Bsp120I GGGCCC 1 cut(s) 771
Bsp1286I GDGCHC 2 cut(s) 582, 775
Bsp143I GATC 5 cut(s) 276, 658, 1069, 1417, 1534
BspACI CCGC 6 cut(s) 148, 289, 391, 413, 546, 1538
BspANI GGCC 8 cut(s) 324, 671, 773, 1084, 1093, 1325, 1400, 1433
BspCNI CTCAG 1 cut(s) 1231
BspFNI CGCG 2 cut(s) 393, 413
BspHI TCATGA 2 cut(s) 561, 1281
BspLI GGNNCC 4 cut(s) 773, 1092, 1208, 1432
BspPI GGATC 2 cut(s) 1425, 1529
BspTNI GGTCTC 1 cut(s) 1381
BsrDI GCAATG 1 cut(s) 1208
BsrFI RCCGGY 1 cut(s) 804
BsrI ACTGG 3 cut(s) 227, 734, 1049
BssAI RCCGGY 1 cut(s) 804
BssECI CCNNGG 2 cut(s) 1086, 1527
BssMI GATC 5 cut(s) 276, 658, 1069, 1417, 1534
BssT1I CCWWGG 1 cut(s) 1086
Bst6I CTCTTC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 4 cut(s) 180, 267, 694, 741
BstDEI CTNAG 3 cut(s) 825, 1239, 1340
BstF5I GGATG 2 cut(s) 421, 1203
BstFNI CGCG 2 cut(s) 393, 413
BstH2I RGCGCY 1 cut(s) 789
BstHHI GCGC 2 cut(s) 395, 788
BstKTI GATC 5 cut(s) 279, 661, 1072, 1420, 1537
BstMAI GTCTC 1 cut(s) 1381
BstMBI GATC 5 cut(s) 276, 658, 1069, 1417, 1534
BstMWI GCNNNNNNNGC 3 cut(s) 298, 736, 1090
BstNSI RCATGY 3 cut(s) 359, 382, 1520
BstSFI CTRYAG 3 cut(s) 789, 1411, 1467
BstSLI GKGCMC 1 cut(s) 775
BstUI CGCG 2 cut(s) 393, 413
BstV1I GCAGC 1 cut(s) 714
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 2 cut(s) 658, 1417
BstYI RGATCY 2 cut(s) 658, 1417
BsuI GTATCC 1 cut(s) 1390
BsuRI GGCC 8 cut(s) 324, 671, 773, 1084, 1093, 1325, 1400, 1433
BtrI CACGTC 1 cut(s) 817
BtsCI GGATG 2 cut(s) 421, 1203
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 4 cut(s) 234, 591, 741, 861
Cac8I GCNNGC 4 cut(s) 180, 267, 694, 741
CciI TCATGA 2 cut(s) 561, 1281
CfoI GCGC 2 cut(s) 395, 788
Cfr10I RCCGGY 1 cut(s) 804
Cfr13I GGNCC 7 cut(s) 669, 771, 772, 1083, 1091, 1206, 1431
Csp6I GTAC 3 cut(s) 627, 1336, 1514
CspAI ACCGGT 1 cut(s) 804
CviQI GTAC 3 cut(s) 627, 1336, 1514
DdeI CTNAG 3 cut(s) 825, 1239, 1340
DpnI GATC 5 cut(s) 278, 660, 1071, 1419, 1536
DpnII GATC 5 cut(s) 276, 658, 1069, 1417, 1534
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 1086
Eco147I AGGCCT 1 cut(s) 1400
Eco24I GRGCYC 2 cut(s) 582, 775
Eco31I GGTCTC 1 cut(s) 1381
Eco47I GGWCC 1 cut(s) 1206
Eco57I CTGAAG 1 cut(s) 153
EcoO109I RGGNCCY 2 cut(s) 771, 772
EcoRI GAATTC 2 cut(s) 871, 1157
EcoT14I CCWWGG 1 cut(s) 1086
EcoT38I GRGCYC 2 cut(s) 582, 775
ErhI CCWWGG 1 cut(s) 1086
FaqI GGGAC 2 cut(s) 344, 939
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 290, 728
FokI GGATG 2 cut(s) 428, 1210
FriOI GRGCYC 2 cut(s) 582, 775
Fsp4HI GCNGC 2 cut(s) 290, 728
FspBI CTAG 4 cut(s) 611, 876, 1350, 1511
GlaI GCGC 2 cut(s) 394, 787
GluI GCNGC 2 cut(s) 290, 728
HaeII RGCGCY 1 cut(s) 789
HaeIII GGCC 8 cut(s) 324, 671, 773, 1084, 1093, 1325, 1400, 1433
HapII CCGG 2 cut(s) 805, 1269
HhaI GCGC 2 cut(s) 395, 788
Hin6I GCGC 2 cut(s) 393, 786
HinP1I GCGC 2 cut(s) 393, 786
HindIII AAGCTT 1 cut(s) 694
HpaII CCGG 2 cut(s) 805, 1269
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 2 cut(s) 142, 455
Hpy8I GTNNAC 2 cut(s) 142, 455
Hpy99I CGWCG 2 cut(s) 821, 1303
HpyAV CCTTC 8 cut(s) 110, 762, 1162, 1264, 1300, 1307, 1411, 1487
HpyCH4IV ACGT 5 cut(s) 348, 402, 816, 1191, 1298
HpyCH4V TGCA 6 cut(s) 265, 284, 301, 982, 1055, 1201
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 736, 1090
HpyF3I CTNAG 3 cut(s) 825, 1239, 1340
HpySE526I ACGT 5 cut(s) 348, 402, 816, 1191, 1298
HspAI GCGC 2 cut(s) 393, 786
Kzo9I GATC 5 cut(s) 276, 658, 1069, 1417, 1534
LmnI GCTCC 2 cut(s) 689, 1171
Lsp1109I GCAGC 1 cut(s) 714
LweI GCATC 2 cut(s) 592, 1188
MaeI CTAG 4 cut(s) 611, 876, 1350, 1511
MaeII ACGT 5 cut(s) 348, 402, 816, 1191, 1298
MaeIII GTNAC 5 cut(s) 238, 351, 533, 748, 884
MalI GATC 5 cut(s) 278, 660, 1071, 1419, 1536
MboI GATC 5 cut(s) 276, 658, 1069, 1417, 1534
MboII GAAGA 8 cut(s) 25, 611, 668, 835, 910, 956, 1233, 1322
MflI RGATCY 2 cut(s) 658, 1417
MhlI GDGCHC 2 cut(s) 582, 775
MluCI AATT 8 cut(s) 507, 871, 971, 1036, 1137, 1157, 1435, 1498
MlyI GAGTC 6 cut(s) 106, 443, 711, 970, 1250, 1363
MmeI TCCRAC 3 cut(s) 144, 539, 1224
MroXI GAANNNNTTC 2 cut(s) 171, 1137
MseI TTAA 4 cut(s) 206, 615, 1458, 1597
MslI CAYNNNNRTG 2 cut(s) 405, 540
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 805, 1269
MvnI CGCG 2 cut(s) 393, 413
MwoI GCNNNNNNNGC 3 cut(s) 298, 736, 1090
NdeII GATC 5 cut(s) 276, 658, 1069, 1417, 1534
NlaIV GGNNCC 4 cut(s) 773, 1092, 1208, 1432
NmuCI GTSAC 3 cut(s) 351, 533, 748
NspI RCATGY 3 cut(s) 359, 382, 1520
OliI CACNNNNGTG 1 cut(s) 540
PagI TCATGA 2 cut(s) 561, 1281
PceI AGGCCT 1 cut(s) 1400
PciI ACATGT 3 cut(s) 355, 378, 1516
PdmI GAANNNNTTC 2 cut(s) 171, 1137
PfeI GAWTC 5 cut(s) 167, 254, 309, 1016, 1285
PinAI ACCGGT 1 cut(s) 804
PkrI GCNGC 2 cut(s) 291, 729
PleI GAGTC 6 cut(s) 106, 442, 710, 969, 1249, 1363
PpsI GAGTC 6 cut(s) 106, 442, 710, 969, 1249, 1363
Ppu21I YACGTR 1 cut(s) 349
PscI ACATGT 3 cut(s) 355, 378, 1516
PspN4I GGNNCC 4 cut(s) 773, 1092, 1208, 1432
PspOMI GGGCCC 1 cut(s) 771
PspPI GGNCC 7 cut(s) 669, 771, 772, 1083, 1091, 1206, 1431
PsuI RGATCY 2 cut(s) 658, 1417
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 3 cut(s) 628, 1337, 1515
RsaNI GTAC 3 cut(s) 627, 1336, 1514
RseI CAYNNNNRTG 2 cut(s) 405, 540
SaqAI TTAA 4 cut(s) 206, 615, 1458, 1597
SatI GCNGC 2 cut(s) 290, 728
Sau3AI GATC 5 cut(s) 276, 658, 1069, 1417, 1534
Sau96I GGNCC 7 cut(s) 669, 771, 772, 1083, 1091, 1206, 1431
SchI GAGTC 6 cut(s) 106, 443, 711, 970, 1250, 1363
SduI GDGCHC 2 cut(s) 582, 775
SfaNI GCATC 2 cut(s) 592, 1188
SfcI CTRYAG 3 cut(s) 789, 1411, 1467
SfiI GGCCNNNNNGGCC 1 cut(s) 1090
SinI GGWCC 1 cut(s) 1206
SmiMI CAYNNNNRTG 2 cut(s) 405, 540
SmlI CTYRAG 3 cut(s) 776, 861, 1178
SmoI CTYRAG 3 cut(s) 776, 861, 1178
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 8 cut(s) 507, 871, 971, 1036, 1137, 1157, 1435, 1498
SseBI AGGCCT 1 cut(s) 1400
SsiI CCGC 6 cut(s) 148, 289, 391, 413, 546, 1538
SspI AATATT 1 cut(s) 1462
SspMI CTAG 4 cut(s) 611, 876, 1350, 1511
StuI AGGCCT 1 cut(s) 1400
StyI CCWWGG 1 cut(s) 1086
TaiI ACGT 5 cut(s) 351, 405, 819, 1194, 1301
TaqI TCGA 2 cut(s) 81, 1533
TasI AATT 8 cut(s) 507, 871, 971, 1036, 1137, 1157, 1435, 1498
TatI WGTACW 1 cut(s) 1513
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 5 cut(s) 167, 254, 309, 1016, 1285
Tru1I TTAA 4 cut(s) 206, 615, 1458, 1597
Tru9I TTAA 4 cut(s) 206, 615, 1458, 1597
TscAI CASTG 4 cut(s) 234, 591, 741, 861
TseFI GTSAC 3 cut(s) 351, 533, 748
TseI GCWGC 1 cut(s) 727
Tsp45I GTSAC 3 cut(s) 351, 533, 748
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 4 cut(s) 234, 591, 741, 861
VpaK11BI GGWCC 1 cut(s) 1206
XapI RAATTY 3 cut(s) 507, 871, 1157
XbaI TCTAGA 1 cut(s) 1349
XceI RCATGY 3 cut(s) 359, 382, 1520
XmnI GAANNNNTTC 2 cut(s) 171, 1137
XspI CTAG 4 cut(s) 611, 876, 1350, 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.