Prupe.4G098900_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000956
Physical Location & Seq
Reverse (-)
5028154 .. 5031475
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G098900.1

Sequence Viewer

Length: 1614 bp
ATGGTTGGCAAAGTTGGCAAGGCCAGAAGAGTCTACAAGGTGTGCTTTTTCCTTATCCGACATTGTGTGCCCAATTTCCTTTGGGTCTCATGGGCCACTGCCTATGCGGATCTCAATGACTTCCTTCAGTGCCTTCCCAAATTTTCTGAGTCCTCCTATCCAATCATTGAAACCATTTACACACAAAAAAATACCTCTTTTCAATATGTTTTGAATGCATACATACAAAACCGCAGATATTCAACACCTACAATTCCAAAACCAATGGCTATTATTGCAGCCATGCATGAATCTCATGTCCAAGCAACTGTGGTTTGTGCAAAAGAACATGCTTTGCATATTAGAATCCGGAGCGGTGGCCATGATTATGAGGGCCTATCATACGTTTCATCTGTCCCATTTATCATTCTTGACATGTTTAATCTTCGATCAATTGAAATAAATGTCACAGATGAAAGCGCTTGGGTTCAAGCTGGGGCCACGGCAGGCGAACTTTATTACAAAATTGCTGAGAAAAGTAAGGTTCATGGATTTCCGGCTGGAGTTTGCCCAACTGTTGCGACTGGTGGCCTTATTAGTGGTGGGGGGTATGGTCCTACGATGAGAAAATTTGGGCTTTCAGCGGATAATATTGAAGATGCTACGCTAGTTAATGTGAATGGTACAATTCTTGATAAAAATTCAATGGGAGAAGATCTTTTTTGGGCCATTAGAGGAGGTGGTGGAGCAAGCTTTGGAGTTATTCTTTCATGGAAGATTAAGTTAGTTCGAGTTCCAGCTAAAGTAACTGTGTTCAATGTTACAAGAAGCATTGAACAAGGTGCCCTAGACGTCCTTTACCGATGGCAATACGTTGCTCCTAAGCTGCCTAAAAACACCTACATAAGAGCAACTTCGCAAGTCAGCAATGGAGAGGGGAAGAAAAAGGCCGTGGAAGTCTCATTCAGTGGTCACTTTTTGGGTCAAATTGATGAGCTTCTTCGGTTGATAAATGAGAGCTTCCCTGAACTTGGTTTACAGCGCAAAGACTGTTTCGAAATGAGTTGGGTAGAATCCACTGTATTTTGGGCTGGCTACCCAATTGGAACTCCCATCAATGTTCTACTTAACAGGACAAATATACCAACATTCTTCTTCAAAAGTAAGTCCGATTATGTGAAAGAACCAATTCCAAAAGAAGGAATAGAATCCATTTGGCAAATGGTGCAAAAGATCGAGAAAGTGTATGTGCAATGGAACCCCTATGGTGGAAGAATGGATGAGATTGCTGCCTCAGCCACTCCATTCCCTCACAGAGCTGGAAACCTATTCAAGATTCAGTATTATATGTCTTGGACAGAGGAAGGAATTGAAACTACCAACAATTACCTCAGCTTCTCGAGAAAATTGTACGAAGAGATGACTCCATTTGTCTCCAAGAACCCAAGAGAGGCCTTCCTAAACTACAGGGATATTGATATTGGCGCTAATCTTCATAATCAGACAGAGTTTGGCATTGCTAGGGTTTATGGCAGCAAGTTTTTTAAAGATAATTTTGATAGATTGGTACGTGTGAAAACCGTGGTTGATCCTCAAAATTTCTTCAGGAATGAACAAAGTATACCACCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

538

Amino Acids

60.75

Weight (kDa)

8.91

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 834
AccB1I GGYRCC 1 cut(s) 821
AccBSI CCGCTC 1 cut(s) 354
AccI GTMKAC 2 cut(s) 33, 1600
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 4 cut(s) 107, 232, 354, 623
AclWI GGATC 2 cut(s) 117, 1562
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 4 cut(s) 140, 608, 679, 1576
AcuI CTGAAG 2 cut(s) 110, 1567
AcyI GRCGYC 1 cut(s) 831
AfaI GTAC 3 cut(s) 664, 1391, 1548
AfeI AGCGCT 1 cut(s) 460
AfiI CCNNNNNNNGG 4 cut(s) 1010, 1178, 1247, 1429
AflIII ACRYGT 2 cut(s) 414, 1549
AluBI AGCT 8 cut(s) 473, 732, 779, 865, 976, 999, 1298, 1374
AluI AGCT 8 cut(s) 473, 732, 779, 865, 976, 999, 1298, 1374
Alw26I GTCTC 3 cut(s) 91, 943, 1417
AlwI GGATC 2 cut(s) 117, 1562
Ama87I CYCGRG 1 cut(s) 1378
Aor13HI TCCGGA 1 cut(s) 348
Aor51HI AGCGCT 1 cut(s) 460
AoxI GGCC 9 cut(s) 21, 93, 358, 373, 477, 568, 705, 927, 1431
ApeKI GCWGC 4 cut(s) 278, 865, 1268, 1512
ApoI RAATTY 4 cut(s) 140, 608, 679, 1576
Asp700I GAANNNNTTC 1 cut(s) 1167
AspLEI GCGC 3 cut(s) 461, 1023, 1466
AspS9I GGNCC 5 cut(s) 93, 373, 477, 593, 705
AsuII TTCGAA 1 cut(s) 1035
AvaI CYCGRG 1 cut(s) 1378
AvaII GGWCC 1 cut(s) 593
BaeGI GKGCMC 2 cut(s) 72, 826
BalI TGGCCA 1 cut(s) 360
BanI GGYRCC 1 cut(s) 821
BbvCI CCTCAGC 2 cut(s) 1273, 1370
BbvI GCAGC 4 cut(s) 290, 852, 1255, 1524
BccI CCATC 2 cut(s) 837, 1100
BceAI ACGGC 2 cut(s) 498, 914
BcoDI GTCTC 3 cut(s) 91, 943, 1417
BfaI CTAG 3 cut(s) 647, 827, 1500
BfmI CTRYAG 1 cut(s) 1444
BfoI RGCGCY 2 cut(s) 462, 1467
BglII AGATCT 1 cut(s) 694
BisI GCNGC 4 cut(s) 279, 866, 1269, 1513
BlsI GCNGC 4 cut(s) 280, 867, 1270, 1514
Bme18I GGWCC 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 1378
BmgT120I GGNCC 5 cut(s) 93, 373, 477, 593, 705
BmiI GGNNCC 3 cut(s) 478, 823, 1238
BmsI GCATC 1 cut(s) 628
BpmI CTGGAG 1 cut(s) 561
Bpu10I CCTNAGC 3 cut(s) 861, 1273, 1370
Bpu14I TTCGAA 1 cut(s) 1035
BsaAI YACGTR 1 cut(s) 1550
BsaHI GRCGYC 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 3 cut(s) 480, 930, 1560
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 4 cut(s) 1010, 1178, 1247, 1429
Bse1I ACTGG 1 cut(s) 568
Bse3DI GCAATG 3 cut(s) 913, 1238, 1494
BseAI TCCGGA 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 480, 930, 1560
BseGI GGATG 1 cut(s) 1264
BseLI CCNNNNNNNGG 4 cut(s) 1010, 1178, 1247, 1429
BseMI GCAATG 3 cut(s) 913, 1238, 1494
BseMII CTCAG 4 cut(s) 138, 501, 1287, 1384
BseNI ACTGG 1 cut(s) 568
BseRI GAGGAG 1 cut(s) 729
BseSI GKGCMC 2 cut(s) 72, 826
BseXI GCAGC 4 cut(s) 290, 852, 1255, 1524
BseYI CCCAGC 1 cut(s) 473
BshFI GGCC 9 cut(s) 23, 95, 360, 375, 479, 570, 707, 929, 1433
BshNI GGYRCC 1 cut(s) 821
BsiHKCI CYCGRG 1 cut(s) 1378
BsiSI CCGG 2 cut(s) 349, 536
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 4 cut(s) 1010, 1178, 1247, 1429
BsmAI GTCTC 3 cut(s) 91, 943, 1417
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 9 cut(s) 23, 95, 360, 375, 479, 570, 707, 929, 1433
Bso31I GGTCTC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 1378
Bsp119I TTCGAA 1 cut(s) 1035
Bsp1286I GDGCHC 2 cut(s) 72, 826
Bsp13I TCCGGA 1 cut(s) 348
Bsp143I GATC 5 cut(s) 109, 428, 694, 1212, 1567
BspACI CCGC 4 cut(s) 107, 232, 354, 623
BspANI GGCC 9 cut(s) 23, 95, 360, 375, 479, 570, 707, 929, 1433
BspCNI CTCAG 4 cut(s) 139, 502, 1286, 1383
BspEI TCCGGA 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 478, 823, 1238
BspPI GGATC 2 cut(s) 117, 1562
BspT104I TTCGAA 1 cut(s) 1035
BspT107I GGYRCC 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 3 cut(s) 913, 1238, 1494
BsrI ACTGG 1 cut(s) 568
BssECI CCNNGG 3 cut(s) 480, 930, 1560
BssMI GATC 5 cut(s) 109, 428, 694, 1212, 1567
BssNAI GTATAC 1 cut(s) 1601
BssNI GRCGYC 1 cut(s) 831
Bst1107I GTATAC 1 cut(s) 1601
Bst4CI ACNGT 6 cut(s) 310, 556, 790, 1031, 1060, 1561
Bst6I CTCTTC 2 cut(s) 22, 1389
BstACI GRCGYC 1 cut(s) 831
BstAPI GCANNNNNTGC 1 cut(s) 1204
BstBAI YACGTR 1 cut(s) 1550
BstBI TTCGAA 1 cut(s) 1035
BstC8I GCNNGC 3 cut(s) 487, 730, 1072
BstDEI CTNAG 5 cut(s) 147, 510, 861, 1273, 1370
BstDSI CCRYGG 3 cut(s) 480, 930, 1560
BstF5I GGATG 1 cut(s) 1264
BstH2I RGCGCY 2 cut(s) 462, 1467
BstHHI GCGC 3 cut(s) 461, 1023, 1466
BstKTI GATC 5 cut(s) 112, 431, 697, 1215, 1570
BstMAI GTCTC 3 cut(s) 91, 943, 1417
BstMBI GATC 5 cut(s) 109, 428, 694, 1212, 1567
BstMWI GCNNNNNNNGC 4 cut(s) 15, 275, 1204, 1274
BstNSI RCATGY 2 cut(s) 332, 418
BstSFI CTRYAG 1 cut(s) 1444
BstSLI GKGCMC 2 cut(s) 72, 826
BstV1I GCAGC 4 cut(s) 290, 852, 1255, 1524
BstX2I RGATCY 2 cut(s) 109, 694
BstYI RGATCY 2 cut(s) 109, 694
BstZ17I GTATAC 1 cut(s) 1601
BsuRI GGCC 9 cut(s) 23, 95, 360, 375, 479, 570, 707, 929, 1433
BtgI CCRYGG 3 cut(s) 480, 930, 1560
BtsCI GGATG 1 cut(s) 1264
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 4 cut(s) 96, 134, 952, 1056
Cac8I GCNNGC 3 cut(s) 487, 730, 1072
CfoI GCGC 3 cut(s) 461, 1023, 1466
Cfr13I GGNCC 5 cut(s) 93, 373, 477, 593, 705
Csp6I GTAC 3 cut(s) 663, 1390, 1547
CviAII CATG 9 cut(s) 90, 283, 287, 296, 329, 362, 415, 527, 750
CviQI GTAC 3 cut(s) 663, 1390, 1547
DdeI CTNAG 5 cut(s) 147, 510, 861, 1273, 1370
DpnI GATC 5 cut(s) 111, 430, 696, 1214, 1569
DpnII GATC 5 cut(s) 109, 428, 694, 1212, 1567
DraI TTTAAA 1 cut(s) 1525
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 22, 1389
EarI CTCTTC 2 cut(s) 22, 1389
Eco147I AGGCCT 1 cut(s) 1433
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 593
Eco47III AGCGCT 1 cut(s) 460
Eco57I CTGAAG 2 cut(s) 110, 1567
Eco88I CYCGRG 1 cut(s) 1378
EcoO109I RGGNCCY 1 cut(s) 373
EcoT22I ATGCAT 2 cut(s) 220, 288
FaeI CATG 9 cut(s) 93, 286, 290, 299, 332, 365, 418, 530, 753
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 877, 909
FaqI GGGAC 1 cut(s) 380
FatI CATG 9 cut(s) 89, 282, 286, 295, 328, 361, 414, 526, 749
FblI GTMKAC 2 cut(s) 33, 1600
Fnu4HI GCNGC 4 cut(s) 279, 866, 1269, 1513
FokI GGATG 1 cut(s) 1271
Fsp4HI GCNGC 4 cut(s) 279, 866, 1269, 1513
FspBI CTAG 3 cut(s) 647, 827, 1500
GlaI GCGC 3 cut(s) 460, 1022, 1465
GluI GCNGC 4 cut(s) 279, 866, 1269, 1513
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 1 cut(s) 561
HaeII RGCGCY 2 cut(s) 462, 1467
HaeIII GGCC 9 cut(s) 23, 95, 360, 375, 479, 570, 707, 929, 1433
HapII CCGG 2 cut(s) 349, 536
HhaI GCGC 3 cut(s) 461, 1023, 1466
Hin1I GRCGYC 1 cut(s) 831
Hin1II CATG 9 cut(s) 93, 286, 290, 299, 332, 365, 418, 530, 753
Hin6I GCGC 3 cut(s) 459, 1021, 1464
HinP1I GCGC 3 cut(s) 459, 1021, 1464
HindIII AAGCTT 1 cut(s) 730
HinfI GANTC 8 cut(s) 30, 149, 290, 345, 1052, 1187, 1315, 1402
HpaII CCGG 2 cut(s) 349, 536
Hpy166II GTNNAC 3 cut(s) 34, 1016, 1601
Hpy188I TCNGA 4 cut(s) 59, 148, 1150, 1482
Hpy188III TCNNGA 8 cut(s) 349, 410, 671, 1216, 1312, 1378, 1380, 1585
Hpy8I GTNNAC 3 cut(s) 34, 1016, 1601
HpyAV CCTTC 5 cut(s) 134, 143, 1172, 1337, 1444
HpyCH4III ACNGT 6 cut(s) 310, 556, 790, 1031, 1060, 1561
HpyCH4IV ACGT 4 cut(s) 384, 831, 852, 1549
HpyCH4V TGCA 7 cut(s) 218, 278, 286, 320, 337, 1207, 1231
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 275, 1204, 1274
HpyF3I CTNAG 5 cut(s) 147, 510, 861, 1273, 1370
HpySE526I ACGT 4 cut(s) 384, 831, 852, 1549
Hsp92I GRCGYC 1 cut(s) 831
Hsp92II CATG 9 cut(s) 93, 286, 290, 299, 332, 365, 418, 530, 753
HspAI GCGC 3 cut(s) 459, 1021, 1464
Kpn2I TCCGGA 1 cut(s) 348
Kzo9I GATC 5 cut(s) 109, 428, 694, 1212, 1567
LmnI GCTCC 3 cut(s) 351, 725, 862
Lsp1109I GCAGC 4 cut(s) 290, 852, 1255, 1524
LweI GCATC 1 cut(s) 628
MaeI CTAG 3 cut(s) 647, 827, 1500
MaeII ACGT 4 cut(s) 384, 831, 852, 1549
MaeIII GTNAC 4 cut(s) 445, 784, 799, 950
MalI GATC 5 cut(s) 111, 430, 696, 1214, 1569
MbiI CCGCTC 1 cut(s) 354
MboI GATC 5 cut(s) 109, 428, 694, 1212, 1567
MfeI CAATTG 2 cut(s) 432, 1080
MflI RGATCY 2 cut(s) 109, 694
MhlI GDGCHC 2 cut(s) 72, 826
MlsI TGGCCA 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 360
MlyI GAGTC 3 cut(s) 39, 158, 1396
MmeI TCCRAC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 360
Mph1103I ATGCAT 2 cut(s) 220, 288
MroI TCCGGA 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 1167
MscI TGGCCA 1 cut(s) 360
MseI TTAA 5 cut(s) 420, 651, 759, 1107, 1524
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 2 cut(s) 349, 536
MunI CAATTG 2 cut(s) 432, 1080
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 4 cut(s) 15, 275, 1204, 1274
NdeII GATC 5 cut(s) 109, 428, 694, 1212, 1567
NlaIII CATG 9 cut(s) 93, 286, 290, 299, 332, 365, 418, 530, 753
NlaIV GGNNCC 3 cut(s) 478, 823, 1238
NmuCI GTSAC 2 cut(s) 445, 950
NsiI ATGCAT 2 cut(s) 220, 288
NspI RCATGY 2 cut(s) 332, 418
NspV TTCGAA 1 cut(s) 1035
PaeR7I CTCGAG 1 cut(s) 1378
PceI AGGCCT 1 cut(s) 1433
PciI ACATGT 1 cut(s) 414
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 1167
PfeI GAWTC 5 cut(s) 290, 345, 1052, 1187, 1315
PkrI GCNGC 4 cut(s) 280, 867, 1270, 1514
PleI GAGTC 3 cut(s) 38, 157, 1396
PpsI GAGTC 3 cut(s) 38, 157, 1396
Ppu21I YACGTR 1 cut(s) 1550
PscI ACATGT 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 3 cut(s) 478, 823, 1238
PspPI GGNCC 5 cut(s) 93, 373, 477, 593, 705
PsrI GAACNNNNNNTAC 3 cut(s) 999, 1031, 1584
PsuI RGATCY 2 cut(s) 109, 694
RsaI GTAC 3 cut(s) 664, 1391, 1548
RsaNI GTAC 3 cut(s) 663, 1390, 1547
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 5 cut(s) 420, 651, 759, 1107, 1524
SatI GCNGC 4 cut(s) 279, 866, 1269, 1513
Sau3AI GATC 5 cut(s) 109, 428, 694, 1212, 1567
Sau96I GGNCC 5 cut(s) 93, 373, 477, 593, 705
SchI GAGTC 3 cut(s) 39, 158, 1396
SduI GDGCHC 2 cut(s) 72, 826
SfaNI GCATC 1 cut(s) 628
SfcI CTRYAG 1 cut(s) 1444
Sfr274I CTCGAG 1 cut(s) 1378
SfuI TTCGAA 1 cut(s) 1035
SinI GGWCC 1 cut(s) 593
SlaI CTCGAG 1 cut(s) 1378
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 1378
SmoI CTYRAG 1 cut(s) 1378
SseBI AGGCCT 1 cut(s) 1433
SsiI CCGC 4 cut(s) 107, 232, 354, 623
SspI AATATT 1 cut(s) 631
SspMI CTAG 3 cut(s) 647, 827, 1500
StuI AGGCCT 1 cut(s) 1433
TaaI ACNGT 6 cut(s) 310, 556, 790, 1031, 1060, 1561
TaiI ACGT 4 cut(s) 387, 834, 855, 1552
TaqI TCGA 5 cut(s) 427, 769, 1035, 1215, 1379
TfiI GAWTC 5 cut(s) 290, 345, 1052, 1187, 1315
Tru1I TTAA 5 cut(s) 420, 651, 759, 1107, 1524
Tru9I TTAA 5 cut(s) 420, 651, 759, 1107, 1524
TscAI CASTG 4 cut(s) 103, 134, 952, 1063
TseFI GTSAC 2 cut(s) 445, 950
TseI GCWGC 4 cut(s) 278, 865, 1268, 1512
Tsp45I GTSAC 2 cut(s) 445, 950
TspDTI ATGAA 7 cut(s) 303, 378, 468, 515, 738, 1463, 1605
TspRI CASTG 4 cut(s) 103, 134, 952, 1063
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 4 cut(s) 140, 608, 679, 1576
XceI RCATGY 2 cut(s) 332, 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 1198
XhoI CTCGAG 1 cut(s) 1378
XmiI GTMKAC 2 cut(s) 33, 1600
XmnI GAANNNNTTC 1 cut(s) 1167
XspI CTAG 3 cut(s) 647, 827, 1500
ZraI GACGTC 1 cut(s) 832
Zsp2I ATGCAT 2 cut(s) 220, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.