Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000956

Physical Location & Seq

Genomic Coordinates Reverse (-)

6511311 .. 6512335

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11042.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTACAATCCTTGATAGAAAATGCATGGGAGAAGATCTATTCTGGCCGGGCCATTAGAGGAGGTGGTGGAGCAAGCTTTGGAGTCATTCTTTCATGGAAGATCAAATTGGTTCGAGTTCCACCTATTGTCACTGTTTTCACAGTTACAAAGACACTTGAGCAAGGCGCTGCGGATGTTCTTCACAGGTGGCAATACGTTGCGCCAAACCTACCTAAAGAACTCTTCATTAGAGCAACTTCAAAAGTCCAGAATAGTACTACGCAAATAGGAAAGAAGACTGTGGAAGTGGCATTTCGTGGTCTCTATTTAGGACGAAGGGAAAACCTTCTTTCTTTGGTAAGTGACAGTTTTCCTGAACTGGGTTTGGAGCAAAAAGACTGCCTTGAAATGAGTTGGATTGAATCCACTATATACTTTGCCGAATACGCATCTGGAACTCCCATAAAGGCTCTAGTAAAGAGACCAACCCAACCACCGCCGTTCTTCTTCAAAGGCAAGTCGGATTATGTAAAACAACCGATTTCGAAAGAGATCCTGAATTTGATATTCGACAAGATGATGAATCAGTATGAGACGACGCACATGCAATGGAACCCATATGGTGGAAGAATGAATGAGATTTCCGAGTCAGAAACTCCATTCCCACACAGAGCAGGAAATCTTTTTATGATTCAGTACTGGACGTATTGGATGGACAAAGGGATTGAGAGCACAGACAAGTACCTTAATTTGTCGATAAACTTTTACGAGAGTATGAATCCGTACGTGTCCAAGAGCCCAAGAGAGGTCTTGCATAACTATAGGGATCTTGACATAGGCTCCAATGTGCTTGATCAGAACAGCACCGAACATGCTAGGGTTTATGGAAGATCGTATTTTAAAGGCAATTTTGAACGATTGGTGTGTGAAAAGTGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

308

Amino Acids

35.32

Weight (kDa)

8.89

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26380 AT1G26390 AT1G26400 AT1G26410 AT1G26420 AT4G20800
fragaria_vesca	FvH4_3g11042 FvH4_3g11043 FvH4_3g11044 FvH4_3g11090
malus_domestica	MD05G1266700.v1.1 MD05G1266800.v1.1 MD05G1267200.v1.1 MD05G1267300.v1.1 MD10G1243900.v1.1 MD10G1244000.v1.1
prunus_persica	Prupe.1G032800_v2.0.a1 Prupe.4G092300_v2.0.a1 Prupe.4G098500_v2.0.a1 Prupe.4G098600_v2.0.a1 Prupe.4G098700_v2.0.a1 Prupe.4G098900_v2.0.a1 Prupe.4G099000_v2.0.a1 Prupe.4G099100_v2.0.a1 Prupe.4G099200_v2.0.a1 Prupe.4G099400_v2.0.a1 Prupe.4G230400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0017771 RchiOBHm_Chr5g0017801 RchiOBHm_Chr5g0017831 RchiOBHm_Chr5g0017861 RchiOBHm_Chr5g0017931 RchiOBHm_Chr5g0017951 RchiOBHm_Chr5g0017981
rosa_laevigata	RLG00000032314 RLG00000032315 RLG00000032316 RLG00000032324 RLG00000032325 RLG00000032328 RLG00000032349
rosa_multiflora	Rmu_sc0003375.1_g000007 Rmu_sc0003834.1_g000007 Rmu_sc0003834.1_g000013 Rmu_sc0003834.1_g000014 Rmu_sc0005929.1_g000010 Rmu_sc0005929.1_g000016 Rmu_sc0011118.1_g000003 Rmu_sc0011171.1_g000007 Rmu_sc0013814.1_g000002 Rmu_sc0014753.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059450 Rroxscaffold_1G00059620 Rroxscaffold_1G00059700 Rroxscaffold_1G00059710
rosa_rugosa	Rorug05G0038600 Rorug05G0038700 Rorug05G0038900 Rorug05G0039200 Rorug05G0039300
rosa_wichuraiana	Rw5G011460 Rw5G011500 Rw5G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	605
AciI	CCGC	2 cut(s)	173, 479
AclWI	GGATC	2 cut(s)	529, 816
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	541
AfaI	GTAC	5 cut(s)	6, 259, 680, 725, 767
AfiI	CCNNNNNNNGG	3 cut(s)	362, 605, 787
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	5 cut(s)	243, 389, 404, 493, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	3 cut(s)	308, 457, 569
AlwI	GGATC	2 cut(s)	529, 816
AoxI	GGCC	2 cut(s)	46, 51
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	541
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	3 cut(s)	170, 205, 920
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	782
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	688
BceAI	ACGGC	1 cut(s)	466
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	3 cut(s)	308, 457, 569
BfaI	CTAG	2 cut(s)	455, 858
BfmI	CTRYAG	1 cut(s)	802
BfoI	RGCGCY	1 cut(s)	171
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmcAI	AGTACT	2 cut(s)	259, 680
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	596, 823
BmrFI	CCNGG	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	440
BmuI	ACTGGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	769
BsaI	GGTCTC	2 cut(s)	308, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	806, 836
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 605, 787
Bse1I	ACTGG	2 cut(s)	366, 686
Bse3DI	GCAATG	1 cut(s)	596
BseGI	GGATG	2 cut(s)	181, 699
BseLI	CCNNNNNNNGG	3 cut(s)	362, 605, 787
BseMI	GCAATG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	366, 686
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	48, 53
BsiHKAI	GWGCWC	1 cut(s)	716
BsiSI	CCGG	1 cut(s)	49
BsiWI	CGTACG	1 cut(s)	765
BslI	CCNNNNNNNGG	3 cut(s)	362, 605, 787
BsmAI	GTCTC	3 cut(s)	308, 457, 569
BsmBI	CGTCTC	1 cut(s)	569
BsnI	GGCC	2 cut(s)	48, 53
Bso31I	GGTCTC	2 cut(s)	308, 457
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	716, 782
Bsp143I	GATC	6 cut(s)	36, 102, 534, 808, 835, 872
BspACI	CCGC	2 cut(s)	173, 479
BspANI	GGCC	2 cut(s)	48, 53
BspLI	GGNNCC	2 cut(s)	596, 823
BspPI	GGATC	2 cut(s)	529, 816
BspT104I	TTCGAA	1 cut(s)	527
BspTNI	GGTCTC	2 cut(s)	308, 457
BsrDI	GCAATG	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	366, 686
BssMI	GATC	6 cut(s)	36, 102, 534, 808, 835, 872
Bst4CI	ACNGT	4 cut(s)	136, 145, 283, 350
Bst6I	CTCTTC	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	769
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	181, 699
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	3 cut(s)	170, 205, 920
BstKTI	GATC	6 cut(s)	39, 105, 537, 811, 838, 875
BstMAI	GTCTC	3 cut(s)	308, 457, 569
BstMBI	GATC	6 cut(s)	36, 102, 534, 808, 835, 872
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNSI	RCATGY	2 cut(s)	589, 857
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	802
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	3 cut(s)	36, 534, 808
BstYI	RGATCY	3 cut(s)	36, 534, 808
BsuRI	GGCC	2 cut(s)	48, 53
BtsCI	GGATG	2 cut(s)	181, 699
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	3 cut(s)	170, 205, 920
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	5 cut(s)	5, 258, 679, 724, 766
CviAII	CATG	4 cut(s)	27, 96, 586, 854
CviJI	RGCY	6 cut(s)	48, 53, 78, 452, 780, 822
CviKI_1	RGCY	6 cut(s)	48, 53, 78, 452, 780, 822
CviQI	GTAC	5 cut(s)	5, 258, 679, 724, 766
DpnI	GATC	6 cut(s)	38, 104, 536, 810, 837, 874
DpnII	GATC	6 cut(s)	36, 102, 534, 808, 835, 872
DraI	TTTAAA	1 cut(s)	883
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	782
Eco31I	GGTCTC	2 cut(s)	308, 457
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	782
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	4 cut(s)	30, 99, 589, 857
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	4 cut(s)	26, 95, 585, 853
FauNDI	CATATG	1 cut(s)	601
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	188, 706
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	455, 858
GlaI	GCGC	3 cut(s)	169, 204, 919
GluI	GCNGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	48, 53
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	589
HhaI	GCGC	3 cut(s)	170, 205, 920
Hin1II	CATG	4 cut(s)	30, 99, 589, 857
Hin6I	GCGC	3 cut(s)	168, 203, 918
HinP1I	GCGC	3 cut(s)	168, 203, 918
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	6 cut(s)	84, 404, 565, 629, 673, 760
HpaII	CCGG	1 cut(s)	49
Hpy188I	TCNGA	4 cut(s)	505, 628, 634, 840
Hpy188III	TCNNGA	5 cut(s)	250, 356, 435, 538, 812
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	2 cut(s)	312, 338
HpyCH4III	ACNGT	4 cut(s)	136, 145, 283, 350
HpyCH4IV	ACGT	3 cut(s)	198, 686, 768
HpyCH4V	TGCA	3 cut(s)	26, 589, 796
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpySE526I	ACGT	3 cut(s)	198, 686, 768
Hsp92II	CATG	4 cut(s)	30, 99, 589, 857
HspAI	GCGC	3 cut(s)	168, 203, 918
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	6 cut(s)	36, 102, 534, 808, 835, 872
LmnI	GCTCC	3 cut(s)	71, 370, 827
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	2 cut(s)	455, 858
MaeII	ACGT	3 cut(s)	198, 686, 768
MaeIII	GTNAC	3 cut(s)	130, 145, 344
MalI	GATC	6 cut(s)	38, 104, 536, 810, 837, 874
MboI	GATC	6 cut(s)	36, 102, 534, 808, 835, 872
MboII	GAAGA	9 cut(s)	46, 112, 173, 217, 289, 478, 481, 621, 882
MflI	RGATCY	3 cut(s)	36, 534, 808
MhlI	GDGCHC	2 cut(s)	716, 782
MluCI	AATT	4 cut(s)	107, 541, 730, 889
MlyI	GAGTC	2 cut(s)	93, 638
MmeI	TCCRAC	2 cut(s)	377, 483
MnlI	CCTC	3 cut(s)	53, 56, 781
Mph1103I	ATGCAT	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	2 cut(s)	729, 882
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	428
NciI	CCSGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	6 cut(s)	36, 102, 534, 808, 835, 872
NlaIII	CATG	4 cut(s)	30, 99, 589, 857
NlaIV	GGNNCC	2 cut(s)	596, 823
NmuCI	GTSAC	2 cut(s)	130, 344
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	2 cut(s)	589, 857
NspV	TTCGAA	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	404, 565, 673, 760
Pfl23II	CGTACG	1 cut(s)	765
PflMI	CCANNNNNTGG	1 cut(s)	605
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	92, 637
PpsI	GAGTC	2 cut(s)	92, 637
Ppu21I	YACGTR	1 cut(s)	769
PspLI	CGTACG	1 cut(s)	765
PspN4I	GGNNCC	2 cut(s)	596, 823
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	3 cut(s)	36, 534, 808
RsaI	GTAC	5 cut(s)	6, 259, 680, 725, 767
RsaNI	GTAC	5 cut(s)	5, 258, 679, 724, 766
SaqAI	TTAA	2 cut(s)	729, 882
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	6 cut(s)	36, 102, 534, 808, 835, 872
Sau96I	GGNCC	1 cut(s)	51
ScaI	AGTACT	2 cut(s)	259, 680
SchI	GAGTC	2 cut(s)	93, 638
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	716, 782
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	802
SfuI	TTCGAA	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	4 cut(s)	107, 541, 730, 889
SsiI	CCGC	2 cut(s)	173, 479
SspMI	CTAG	2 cut(s)	455, 858
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	4 cut(s)	136, 145, 283, 350
TaiI	ACGT	3 cut(s)	201, 689, 771
TaqI	TCGA	4 cut(s)	115, 527, 552, 737
TasI	AATT	4 cut(s)	107, 541, 730, 889
TatI	WGTACW	2 cut(s)	257, 678
TfiI	GAWTC	4 cut(s)	404, 565, 673, 760
Tru1I	TTAA	2 cut(s)	729, 882
Tru9I	TTAA	2 cut(s)	729, 882
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	130, 344
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	2 cut(s)	130, 344
TspDTI	ATGAA	5 cut(s)	84, 217, 578, 629, 773
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	605
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	2 cut(s)	589, 857
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	2 cut(s)	455, 858
ZrmI	AGTACT	2 cut(s)	259, 680
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.