Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011171.1

Orthogroup ID

OG0000956

Physical Location & Seq

Genomic Coordinates Reverse (-)

15802 .. 16687

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011171.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgagaaaatatgggctcaccgtggataacattgaagatgctaaactagttaatgtgaatggtacagttcttgatagaaagtctatgggagaagatcttttttgggccattagaggtggtggtggagcaagctttggagtcattttgtcatggaaaataaagctgcttccagtgccagccaaagtgactgtattcaacatcggaaggacccttgagcaaggcgctacagatgttctttaccggtggcaacacgtcgcacctaagctacctaaagaaatcttcatcagagcaatgcctcaagtgttgaatactagtttgggtaacaagactgtggaagtgtcattcattggtttcttcttgggacaaagtgatgagcttctttcattgataaataggagtcttcctgaattggttggaacttccatagacgttctacttgaaaggcccaaggggccaacagacaacttcaaaggcaagtctgactacgtgaaagaaccaattccaaaagaagacatagaattcatattgaaggagctacttaagatagaaaacttgtggatgcaatggaacccttacggtggaagaatgagggagatttctgagtcggaaactcccttccctcacagagccggaaacctgttcatgattcaatactctatgtcgtgggaggaagaagggattgaggccaccaacaagtacctcagcttacctagaaaattttacaaaataatgactccatttgtatccaagagaccaagagaggccttccaaaactacagggatcttgacattggggccaatttggataattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

270

Amino Acids

30.8

Weight (kDa)

7.8

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26380 AT1G26390 AT1G26400 AT1G26410 AT1G26420 AT4G20800
fragaria_vesca	FvH4_3g11042 FvH4_3g11043 FvH4_3g11044 FvH4_3g11090
malus_domestica	MD05G1266700.v1.1 MD05G1266800.v1.1 MD05G1267200.v1.1 MD05G1267300.v1.1 MD10G1243900.v1.1 MD10G1244000.v1.1
prunus_persica	Prupe.1G032800_v2.0.a1 Prupe.4G092300_v2.0.a1 Prupe.4G098500_v2.0.a1 Prupe.4G098600_v2.0.a1 Prupe.4G098700_v2.0.a1 Prupe.4G098900_v2.0.a1 Prupe.4G099000_v2.0.a1 Prupe.4G099100_v2.0.a1 Prupe.4G099200_v2.0.a1 Prupe.4G099400_v2.0.a1 Prupe.4G230400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0017771 RchiOBHm_Chr5g0017801 RchiOBHm_Chr5g0017831 RchiOBHm_Chr5g0017861 RchiOBHm_Chr5g0017931 RchiOBHm_Chr5g0017951 RchiOBHm_Chr5g0017981
rosa_laevigata	RLG00000032314 RLG00000032315 RLG00000032316 RLG00000032324 RLG00000032325 RLG00000032328 RLG00000032349
rosa_multiflora	Rmu_sc0003375.1_g000007 Rmu_sc0003834.1_g000007 Rmu_sc0003834.1_g000013 Rmu_sc0003834.1_g000014 Rmu_sc0005929.1_g000010 Rmu_sc0005929.1_g000016 Rmu_sc0011118.1_g000003 Rmu_sc0011171.1_g000007 Rmu_sc0013814.1_g000002 Rmu_sc0014753.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059450 Rroxscaffold_1G00059620 Rroxscaffold_1G00059700 Rroxscaffold_1G00059710
rosa_rugosa	Rorug05G0038600 Rorug05G0038700 Rorug05G0038900 Rorug05G0039200 Rorug05G0039300
rosa_wichuraiana	Rw5G011460 Rw5G011500 Rw5G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	789
AcsI	RAATTY	2 cut(s)	518, 716
AfaI	GTAC	2 cut(s)	64, 698
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	250
AgeI	ACCGGT	1 cut(s)	240
AgsI	TTSAA	7 cut(s)	35, 196, 307, 440, 469, 529, 650
AhlI	ACTAGT	2 cut(s)	46, 311
AjiI	CACGTC	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	6 cut(s)	132, 163, 265, 376, 535, 705
AluI	AGCT	6 cut(s)	132, 163, 265, 376, 535, 705
Alw26I	GTCTC	1 cut(s)	745
AlwI	GGATC	1 cut(s)	789
AoxI	GGCC	6 cut(s)	105, 443, 452, 684, 762, 795
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	2 cut(s)	518, 716
AsiGI	ACCGGT	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	5 cut(s)	105, 207, 444, 452, 795
AsuHPI	GGTGA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	2 cut(s)	392, 516
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	745
BcuI	ACTAGT	2 cut(s)	46, 311
BfaI	CTAG	3 cut(s)	47, 312, 711
BfmI	CTRYAG	2 cut(s)	225, 775
BfoI	RGCGCY	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	754
BglI	GCCNNNNNGGC	1 cut(s)	451
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	5 cut(s)	105, 207, 444, 452, 795
BmiI	GGNNCC	4 cut(s)	209, 453, 569, 796
BmsI	GCATC	2 cut(s)	28, 549
BpiI	GAAGAC	2 cut(s)	392, 516
Bpu10I	CCTNAGC	2 cut(s)	261, 701
BpuEI	CTTGAG	2 cut(s)	233, 282
BsaAI	YACGTR	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	2 cut(s)	21, 447
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	2 cut(s)	297, 569
BseDI	CCNNGG	2 cut(s)	21, 447
BseGI	GGATG	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	2 cut(s)	297, 569
BseMII	CTCAG	2 cut(s)	591, 715
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	150
BshFI	GGCC	6 cut(s)	107, 445, 454, 686, 764, 797
BshTI	ACCGGT	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	241, 630
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	745
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	6 cut(s)	107, 445, 454, 686, 764, 797
Bso31I	GGTCTC	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	94, 781
BspANI	GGCC	6 cut(s)	107, 445, 454, 686, 764, 797
BspCNI	CTCAG	2 cut(s)	592, 714
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	4 cut(s)	209, 453, 569, 796
BspPI	GGATC	1 cut(s)	789
BspTI	CTTAAG	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	745
BsrDI	GCAATG	2 cut(s)	297, 569
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	21, 447
BssMI	GATC	2 cut(s)	94, 781
BssT1I	CCWWGG	1 cut(s)	447
Bst4CI	ACNGT	5 cut(s)	22, 67, 190, 331, 578
BstAFI	CTTAAG	1 cut(s)	539
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	130, 177
BstDEI	CTNAG	3 cut(s)	261, 600, 701
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	564
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	2 cut(s)	97, 784
BstMAI	GTCTC	1 cut(s)	745
BstMBI	GATC	2 cut(s)	94, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 451
BstSFI	CTRYAG	2 cut(s)	225, 775
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	2 cut(s)	392, 516
BstX2I	RGATCY	2 cut(s)	94, 781
BstYI	RGATCY	2 cut(s)	94, 781
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	6 cut(s)	107, 445, 454, 686, 764, 797
BtgI	CCRYGG	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	130, 177
CciI	TCATGA	1 cut(s)	642
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	240
Cfr13I	GGNCC	5 cut(s)	105, 207, 444, 452, 795
Csp6I	GTAC	2 cut(s)	63, 697
CspAI	ACCGGT	1 cut(s)	240
CviAII	CATG	2 cut(s)	150, 643
CviQI	GTAC	2 cut(s)	63, 697
DdeI	CTNAG	3 cut(s)	261, 600, 701
DpnI	GATC	2 cut(s)	96, 783
DpnII	GATC	2 cut(s)	94, 781
Eco130I	CCWWGG	1 cut(s)	447
Eco147I	AGGCCT	1 cut(s)	764
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	2 cut(s)	153, 646
FaiI	YATR	8 cut(s)	12, 86, 151, 425, 515, 524, 644, 659
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	2 cut(s)	149, 642
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	1 cut(s)	571
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	3 cut(s)	47, 312, 711
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	6 cut(s)	107, 445, 454, 686, 764, 797
HapII	CCGG	2 cut(s)	241, 630
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	153, 646
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	5 cut(s)	138, 397, 602, 646, 733
HpaII	CCGG	2 cut(s)	241, 630
HphI	GGTGA	1 cut(s)	10
Hpy188I	TCNGA	5 cut(s)	203, 287, 481, 601, 607
Hpy188III	TCNNGA	4 cut(s)	71, 404, 643, 785
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	5 cut(s)	198, 523, 625, 668, 775
HpyCH4III	ACNGT	5 cut(s)	22, 67, 190, 331, 578
HpyCH4IV	ACGT	3 cut(s)	252, 429, 486
HpyCH4V	TGCA	1 cut(s)	562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 451
HpyF3I	CTNAG	3 cut(s)	261, 600, 701
HpySE526I	ACGT	3 cut(s)	252, 429, 486
Hsp92II	CATG	2 cut(s)	153, 646
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	94, 781
LmnI	GCTCC	2 cut(s)	125, 532
LpnPI	CCDG	7 cut(s)	183, 189, 254, 417, 643, 650, 763
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	2 cut(s)	28, 549
MaeI	CTAG	3 cut(s)	47, 312, 711
MaeII	ACGT	3 cut(s)	252, 429, 486
MaeIII	GTNAC	2 cut(s)	184, 320
MalI	GATC	2 cut(s)	96, 783
MboI	GATC	2 cut(s)	94, 781
MboII	GAAGA	8 cut(s)	47, 104, 271, 346, 392, 521, 594, 683
MflI	RGATCY	2 cut(s)	94, 781
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	6 cut(s)	407, 498, 518, 716, 799, 808
MlyI	GAGTC	4 cut(s)	147, 406, 611, 727
MmeI	TCCRAC	2 cut(s)	394, 585
MnlI	CCTC	8 cut(s)	107, 306, 582, 630, 661, 676, 710, 754
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	2 cut(s)	51, 540
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	2 cut(s)	241, 630
MwoI	GCNNNNNNNGC	2 cut(s)	172, 451
NdeII	GATC	2 cut(s)	94, 781
NlaIII	CATG	2 cut(s)	153, 646
NlaIV	GGNNCC	4 cut(s)	209, 453, 569, 796
NmuCI	GTSAC	1 cut(s)	184
PagI	TCATGA	1 cut(s)	642
PceI	AGGCCT	1 cut(s)	764
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	646
PinAI	ACCGGT	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	4 cut(s)	146, 405, 610, 727
PpsI	GAGTC	4 cut(s)	146, 405, 610, 727
Ppu21I	YACGTR	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	209, 453, 569, 796
PspPI	GGNCC	5 cut(s)	105, 207, 444, 452, 795
PspPPI	RGGWCCY	1 cut(s)	207
PsuI	RGATCY	2 cut(s)	94, 781
RsaI	GTAC	2 cut(s)	64, 698
RsaNI	GTAC	2 cut(s)	63, 697
SaqAI	TTAA	2 cut(s)	51, 540
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	2 cut(s)	94, 781
Sau96I	GGNCC	5 cut(s)	105, 207, 444, 452, 795
SchI	GAGTC	4 cut(s)	147, 406, 611, 727
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	28, 549
SfcI	CTRYAG	2 cut(s)	225, 775
SfiI	GGCCNNNNNGGCC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	207
SmlI	CTYRAG	3 cut(s)	212, 297, 539
SmoI	CTYRAG	3 cut(s)	212, 297, 539
SpeI	ACTAGT	2 cut(s)	46, 311
Sse9I	AATT	6 cut(s)	407, 498, 518, 716, 799, 808
SseBI	AGGCCT	1 cut(s)	764
SspMI	CTAG	3 cut(s)	47, 312, 711
StuI	AGGCCT	1 cut(s)	764
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	5 cut(s)	22, 67, 190, 331, 578
TaiI	ACGT	3 cut(s)	255, 432, 489
TasI	AATT	6 cut(s)	407, 498, 518, 716, 799, 808
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	2 cut(s)	51, 540
Tru9I	TTAA	2 cut(s)	51, 540
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	5 cut(s)	271, 334, 372, 511, 631
TspRI	CASTG	1 cut(s)	177
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	518, 716
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	3 cut(s)	47, 312, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.