FvH4_3g11043

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000956
Physical Location & Seq
Reverse (-)
6515369 .. 6516781
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11043.t1

Sequence Viewer

Length: 1179 bp
ATGAGAATCCGAAGTGGTGGCCACGACTACGAGGGCCTATCCTTCATTTCATATATGTCAAATGTTTCCTATATAGTCCTCGACATGTTTAAGCTTCGATCGATTGATATTAATGTTGCAGATGAAAGTGCTTGGGTCGAGACTGGAGCTATCTTAGGTGAACTTTACTATAAGATTGCGGAGAAAAGCAATGCTCATGCATTTCCAGGAGGAGTTTGCCCCTCTGTTGGTCTTGGTGGCCTTTTCAGTGGTGGCGGCTATGGTCCGATGATGAGAAAATTTGGTCTTACAGTGGATAATATAGTAGATGCTAGACTAGTAGACGTGAATGGTACAATCCTTGATAGAAAATCCATGGGGGAAGATCTATTTTGGGCCATTAGAGGAGCAAGCTTTGGAGTCATTCTTGCATGGAAGATCAAGTTACTTCCAATTCCATCCACCGTGACTGTTTTCAGAGTTAACAGGACACTCGAACAAGGCGGGATAGATGTTCTTTACAGGTGGCAATACGTTGCGCCGAAGCTACCAAAAGACATCTTCATTAGGGCAACTTCAATTCTCCGTAAGGGTACTAGCCAAGTGAGCAATAAGACTGTGGAAGTGGTATTCCTTGGACTCTATTTGGGACAAAAGGAAAGCCTTCTTGCTTTGCTAAACCACAGTTTTCCTGAACTCGGTTTAGAGCAAAAAGATTGCAATGAGATGAGTTGGGTAAATGCGACTTTATTCTTGGCGGACTACCCAGCTGGAGCTCCCACAACTGCTCTTCTCGACAGGCCAAAGGGACCAGAATTCTTCTTCAAAAGCAGGTCTGATTATGTGAAAGAACCGATTCCGAAAGAGGCAATCGAAACCATGTGGCAGAAGATACTTGCTATAGAGACGCTTCAGATGCAGTGGAACCCTTATGGTGGAAGAATGAGTGAGATTTCTCACAAGTTTCGTGAAGCAATGACTCCATTTGTGTCCAAGAACCCTAGAGAGGCCTTCCAGAACTACAGGGATCTCGACAATGGTGCCAATTGGAATAACCAGACTGAGATCAAGACTGCTTCAGTTTATGGAAGAAAGTACTTCAAGGACAATTTTTATAGATTGGCAAGTGTTAAAGCCAAGGTTGATCCTGAGAACTTTTTCAGACATGAGCAGAGTATCCCACCACTTCCCAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

393

Amino Acids

44.24

Weight (kDa)

8.9

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 2 - 114 1.9e-16 FAD binding domain
BBE PF08031 330 - 387 6.3e-17 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 801
AccB1I GGYRCC 1 cut(s) 1019
AccI GTMKAC 1 cut(s) 321
AciI CCGC 4 cut(s) 179, 255, 483, 737
AclWI GGATC 2 cut(s) 1014, 1118
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 2 cut(s) 278, 794
AcuI CTGAAG 2 cut(s) 875, 1041
AfaI GTAC 3 cut(s) 334, 574, 1076
AfiI CCNNNNNNNGG 4 cut(s) 227, 677, 914, 985
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 3 cut(s) 558, 805, 1081
AhlI ACTAGT 1 cut(s) 316
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 6 cut(s) 94, 149, 393, 526, 749, 755
AluI AGCT 6 cut(s) 94, 149, 393, 526, 749, 755
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 2 cut(s) 134, 878
AlwI GGATC 2 cut(s) 1014, 1118
AoxI GGCC 6 cut(s) 19, 34, 238, 375, 779, 987
ApoI RAATTY 2 cut(s) 278, 794
AseI ATTAAT 1 cut(s) 111
Asp700I GAANNNNTTC 3 cut(s) 642, 834, 1136
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 4 cut(s) 34, 263, 375, 788
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 2 cut(s) 263, 788
BalI TGGCCA 1 cut(s) 21
BanI GGYRCC 1 cut(s) 1019
BanII GRGCYC 1 cut(s) 757
Bbv12I GWGCWC 1 cut(s) 757
BccI CCATC 1 cut(s) 445
BcgI CGANNNNNNTGC 2 cut(s) 1001, 1035
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 1166
BcoDI GTCTC 2 cut(s) 134, 878
BcuI ACTAGT 1 cut(s) 316
BfaI CTAG 4 cut(s) 312, 317, 576, 981
BfmI CTRYAG 2 cut(s) 879, 1000
BfuAI ACCTGC 1 cut(s) 801
BfuI GTATCC 1 cut(s) 1166
BglII AGATCT 1 cut(s) 364
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
BmcAI AGTACT 1 cut(s) 1076
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 263, 788
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 4 cut(s) 34, 263, 375, 788
BmiI GGNNCC 3 cut(s) 789, 905, 1021
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 298, 885
BpmI CTGGAG 2 cut(s) 165, 771
Bsa29I ATCGAT 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 354, 613, 1116
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 677, 914, 985
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 3 cut(s) 196, 706, 960
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 101
BseDI CCNNGG 3 cut(s) 354, 613, 1116
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 4 cut(s) 227, 677, 914, 985
BseMI GCAATG 3 cut(s) 196, 706, 960
BseMII CTCAG 2 cut(s) 1032, 1119
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 2 cut(s) 225, 399
BseYI CCCAGC 1 cut(s) 745
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 6 cut(s) 21, 36, 240, 377, 781, 989
BshNI GGYRCC 1 cut(s) 1019
BshVI ATCGAT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 757
BslFI GGGAC 2 cut(s) 642, 801
BslI CCNNNNNNNGG 4 cut(s) 227, 677, 914, 985
BsmAI GTCTC 2 cut(s) 134, 878
BsmBI CGTCTC 1 cut(s) 878
BsmFI GGGAC 2 cut(s) 642, 801
BsnI GGCC 6 cut(s) 21, 36, 240, 377, 781, 989
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 6 cut(s) 98, 364, 417, 1006, 1044, 1123
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 4 cut(s) 179, 255, 483, 737
BspANI GGCC 6 cut(s) 21, 36, 240, 377, 781, 989
BspCNI CTCAG 2 cut(s) 1033, 1120
BspDI ATCGAT 1 cut(s) 101
BspLI GGNNCC 3 cut(s) 789, 905, 1021
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 2 cut(s) 1014, 1118
BspQI GCTCTTC 1 cut(s) 774
BspT107I GGYRCC 1 cut(s) 1019
BsrDI GCAATG 3 cut(s) 196, 706, 960
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 3 cut(s) 354, 613, 1116
BssMI GATC 6 cut(s) 98, 364, 417, 1006, 1044, 1123
BssT1I CCWWGG 3 cut(s) 354, 613, 1116
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 5 cut(s) 292, 445, 451, 598, 665
Bst6I CTCTTC 1 cut(s) 774
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 154, 1041, 1128
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 437
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 6 cut(s) 101, 367, 420, 1009, 1047, 1126
BstMAI GTCTC 2 cut(s) 134, 878
BstMBI GATC 6 cut(s) 98, 364, 417, 1006, 1044, 1123
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 2 cut(s) 585, 895
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 2 cut(s) 879, 1000
BstX2I RGATCY 2 cut(s) 364, 1006
BstYI RGATCY 2 cut(s) 364, 1006
Bsu15I ATCGAT 1 cut(s) 101
BsuI GTATCC 1 cut(s) 1166
BsuRI GGCC 6 cut(s) 21, 36, 240, 377, 781, 989
BsuTUI ATCGAT 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 437
BtsI GCAGTG 1 cut(s) 905
BtsIMutI CAGTG 3 cut(s) 253, 297, 905
BveI ACCTGC 1 cut(s) 801
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 1 cut(s) 520
Cfr13I GGNCC 4 cut(s) 34, 263, 375, 788
ClaI ATCGAT 1 cut(s) 101
CseI GACGC 1 cut(s) 895
Csp6I GTAC 3 cut(s) 333, 573, 1075
CviAII CATG 6 cut(s) 85, 197, 355, 411, 859, 1145
CviQI GTAC 3 cut(s) 333, 573, 1075
DdeI CTNAG 3 cut(s) 154, 1041, 1128
DpnI GATC 6 cut(s) 100, 366, 419, 1008, 1046, 1125
DpnII GATC 6 cut(s) 98, 364, 417, 1006, 1044, 1123
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
EciI GGCGGA 1 cut(s) 752
Ecl136II GAGCTC 1 cut(s) 755
Eco130I CCWWGG 3 cut(s) 354, 613, 1116
Eco147I AGGCCT 1 cut(s) 989
Eco24I GRGCYC 1 cut(s) 757
Eco47I GGWCC 2 cut(s) 263, 788
Eco53kI GAGCTC 1 cut(s) 755
Eco57I CTGAAG 2 cut(s) 875, 1041
EcoICRI GAGCTC 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 3 cut(s) 354, 613, 1116
EcoT22I ATGCAT 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 757
ErhI CCWWGG 3 cut(s) 354, 613, 1116
Esp3I CGTCTC 1 cut(s) 878
FaeI CATG 6 cut(s) 88, 200, 358, 414, 862, 1148
FaqI GGGAC 2 cut(s) 642, 801
FatI CATG 6 cut(s) 84, 196, 354, 410, 858, 1144
FauI CCCGC 1 cut(s) 476
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 757
Fsp4HI GCNGC 1 cut(s) 256
FspBI CTAG 4 cut(s) 312, 317, 576, 981
GlaI GCGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 256
GsaI CCCAGC 1 cut(s) 749
GsuI CTGGAG 2 cut(s) 165, 771
HaeIII GGCC 6 cut(s) 21, 36, 240, 377, 781, 989
HgaI GACGC 1 cut(s) 895
HhaI GCGC 1 cut(s) 520
Hin1II CATG 6 cut(s) 88, 200, 358, 414, 862, 1148
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 2 cut(s) 92, 391
HinfI GANTC 5 cut(s) 6, 399, 618, 835, 958
HpaI GTTAAC 1 cut(s) 463
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 3 cut(s) 161, 322, 463
Hpy188I TCNGA 7 cut(s) 11, 267, 458, 817, 840, 894, 1142
Hpy188III TCNNGA 8 cut(s) 139, 671, 773, 947, 994, 1010, 1048, 1127
Hpy8I GTNNAC 3 cut(s) 161, 322, 463
HpyAV CCTTC 3 cut(s) 52, 653, 1000
HpyCH4III ACNGT 5 cut(s) 292, 445, 451, 598, 665
HpyCH4IV ACGT 2 cut(s) 324, 513
HpyCH4V TGCA 5 cut(s) 119, 200, 410, 699, 898
HpyF10VI GCNNNNNNNGC 2 cut(s) 585, 895
HpyF3I CTNAG 3 cut(s) 154, 1041, 1128
HpySE526I ACGT 2 cut(s) 324, 513
Hsp92II CATG 6 cut(s) 88, 200, 358, 414, 862, 1148
HspAI GCGC 1 cut(s) 518
KspAI GTTAAC 1 cut(s) 463
Kzo9I GATC 6 cut(s) 98, 364, 417, 1006, 1044, 1123
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 4 cut(s) 146, 386, 752, 760
LweI GCATC 2 cut(s) 298, 885
MaeI CTAG 4 cut(s) 312, 317, 576, 981
MaeII ACGT 2 cut(s) 324, 513
MaeIII GTNAC 2 cut(s) 423, 445
MalI GATC 6 cut(s) 100, 366, 419, 1008, 1046, 1125
MboI GATC 6 cut(s) 98, 364, 417, 1006, 1044, 1123
MboII GAAGA 9 cut(s) 374, 427, 532, 761, 790, 793, 880, 930, 1080
MfeI CAATTG 1 cut(s) 1024
MflI RGATCY 2 cut(s) 364, 1006
MhlI GDGCHC 1 cut(s) 757
MlsI TGGCCA 1 cut(s) 21
MluCI AATT 6 cut(s) 278, 432, 558, 794, 1024, 1087
MluNI TGGCCA 1 cut(s) 21
MlyI GAGTC 3 cut(s) 408, 612, 952
MnlI CCTC 7 cut(s) 25, 89, 203, 232, 377, 838, 979
Mox20I TGGCCA 1 cut(s) 21
Mph1103I ATGCAT 1 cut(s) 202
MroXI GAANNNNTTC 3 cut(s) 642, 834, 1136
MscI TGGCCA 1 cut(s) 21
MseI TTAA 4 cut(s) 90, 111, 462, 1110
Msp20I TGGCCA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 749
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 1 cut(s) 1024
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 585, 895
NcoI CCATGG 1 cut(s) 354
NdeII GATC 6 cut(s) 98, 364, 417, 1006, 1044, 1123
NlaIII CATG 6 cut(s) 88, 200, 358, 414, 862, 1148
NlaIV GGNNCC 3 cut(s) 789, 905, 1021
NmuCI GTSAC 1 cut(s) 445
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 1 cut(s) 88
PceI AGGCCT 1 cut(s) 989
PciI ACATGT 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 774
PdmI GAANNNNTTC 3 cut(s) 642, 834, 1136
PfeI GAWTC 2 cut(s) 6, 835
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 1 cut(s) 257
Ple19I CGATCG 1 cut(s) 101
PleI GAGTC 3 cut(s) 407, 612, 952
PpsI GAGTC 3 cut(s) 407, 612, 952
PscI ACATGT 1 cut(s) 84
PshBI ATTAAT 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 745
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 789, 905, 1021
PspPI GGNCC 4 cut(s) 34, 263, 375, 788
PsuI RGATCY 2 cut(s) 364, 1006
PvuI CGATCG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 3 cut(s) 334, 574, 1076
RsaNI GTAC 3 cut(s) 333, 573, 1075
SacI GAGCTC 1 cut(s) 757
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 4 cut(s) 90, 111, 462, 1110
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 6 cut(s) 98, 364, 417, 1006, 1044, 1123
Sau96I GGNCC 4 cut(s) 34, 263, 375, 788
ScaI AGTACT 1 cut(s) 1076
SchI GAGTC 3 cut(s) 408, 612, 952
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 757
SfaNI GCATC 2 cut(s) 298, 885
SfcI CTRYAG 2 cut(s) 879, 1000
SinI GGWCC 2 cut(s) 263, 788
SpeI ACTAGT 1 cut(s) 316
Sse9I AATT 6 cut(s) 278, 432, 558, 794, 1024, 1087
SseBI AGGCCT 1 cut(s) 989
SsiI CCGC 4 cut(s) 179, 255, 483, 737
SspMI CTAG 4 cut(s) 312, 317, 576, 981
SstI GAGCTC 1 cut(s) 757
StuI AGGCCT 1 cut(s) 989
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 3 cut(s) 354, 613, 1116
TaaI ACNGT 5 cut(s) 292, 445, 451, 598, 665
TaiI ACGT 2 cut(s) 327, 516
TaqI TCGA 8 cut(s) 81, 97, 101, 138, 474, 774, 852, 1011
TasI AATT 6 cut(s) 278, 432, 558, 794, 1024, 1087
TatI WGTACW 1 cut(s) 1074
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 2 cut(s) 6, 835
Tru1I TTAA 4 cut(s) 90, 111, 462, 1110
Tru9I TTAA 4 cut(s) 90, 111, 462, 1110
TscAI CASTG 3 cut(s) 253, 297, 905
TseFI GTSAC 1 cut(s) 445
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 4 cut(s) 34, 39, 138, 532
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 3 cut(s) 253, 297, 905
VpaK11BI GGWCC 2 cut(s) 263, 788
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 2 cut(s) 278, 794
XceI RCATGY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 3 cut(s) 642, 834, 1136
XspI CTAG 4 cut(s) 312, 317, 576, 981
ZrmI AGTACT 1 cut(s) 1076
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.