Prupe.4G092300_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000956
Physical Location & Seq
Reverse (-)
4601024 .. 4602601
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G092300.1

Sequence Viewer

Length: 1578 bp
ATGAAGGTACCACTACTCGCCATTCTCTGCGTGTTTTCGCTCTCAATATCAAGGGCAGCTTCTGATAATCCATTTCTCAATGACTTCCTCCAGTGCCTTCCACAAAAATCTGAGCCCACTTACCCGATCTTTGACGCCATTTACACTACAGAAAATAGCTCGTTTCAATCAGTTTTGCTGGGATACATAAGAAACAGAAGATATTCAACCCCTACAACTCCAAAACCTTTGGCTATCGTAGCAGTCAAGCATGAATCTCATGTCATAGCAACCGTGATTTGTGCGAAACAACACGGGTTGCAAATTAGAATCCGAAGTGGTGGCCATGATTATGAGGGCCTATCATACGTATCGCATGTCCCCTTTGTCATTCTTGACATGTTTAATATGCGATCCATCGAAATCAATGTCACAGATGAGAGCGCTTGGGTTCAGGCAGGGGCTACAACTGGTGAACTTTATTATGAAATTGCAAATAAAAGTAAGGTTCATGGGTTTCCAGCTGGAGCTTGTCTAAGTCTTGGTACTGGTGGTCACTTTAGTGGTGGTGGCTATGGGTACATGATGAGAAAATATGGGCTCTCAGTCGATAACATTGAAGATGCAAAAGTAGTTGATGTGGATGGGATAATTCTTGATAGAAAGTCCATGGGAGAAGATAGTTTTTGGGCCATTAGAGGAGGCGGTGGAGCAAGCTTTGGAGTTATTTTGTCATGGAAGATCAAGTTGGTTGCAGTTCCAGCCAAAGTGACTGTGTTCAATGTTAAGAGGACACTAGAACAAGGAGCTACAGATATCATTTATAAGTGGCAATTCGTAGCACCAAAGCTGCCTCAGGACATCTTCATCAGAGCCATGCCGCAAGTGAAGAATAATACTGAGGGCAACAAGACTGTGGAAGTATCCTTCATTGGTCACTTTTTGGGACAAAGCGGTAAGCTTCTTTCGTTGATGAATGAGAGTTTCCCGGAATTGGGTTTACAACAAAAAGATTGTTTTGAAATGAGCTGGGTAGAATCCACTGTTTTCTGGGCTGACTACCCTGTTGGAACTCCCCTAAAAGTTCTACTTGATAGGCCAAAGGAGCCAACAATGTTCTTCAAAGTTAAGTCTGACTATGTGAAAGAACCAATTTCGAAACAAGGAATAGAATCCATATGGCAGATATTACTCGGGATAGAGAAAGTGTGGATGCAATGGAACCCCTACGGTGGAAGAATGAGTGAGATTTCTGAGTCAGAAACACCATTTCCTCACAGAGCTGGAAATATATTTGCGATTCAGTATTGGTTGTTTTGGGTGGAACAAGGGGCTGATACCACCAACAAGTACATTGACTTGTCAAGAAAATTGTATGAAGGAATGACTCCATTTGTCTCCAAGAGCCCAAGAGAGGCTTTCCAAAACTACAGAGATCTTGACATTGGCGCCAATCTGGATAATCAGACTAGATTTGAAACTGCTAAAGTTTATGGAAGCAAATATTTTAAGGGTAATTTTAATAAACTGGTACGTGTGAAAACTGTCATGGATCGTCAAAACTTTTTCAGGCATGAACAAAGCATCCCACCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

526

Amino Acids

59.24

Weight (kDa)

8.52

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 2 cut(s) 7, 1427
AciI CCGC 3 cut(s) 684, 860, 933
AclWI GGATC 2 cut(s) 387, 1539
AcoI YGGCCR 1 cut(s) 322
AcyI GRCGYC 2 cut(s) 135, 1428
AfaI GTAC 5 cut(s) 9, 526, 560, 1331, 1512
AfeI AGCGCT 1 cut(s) 424
AfiI CCNNNNNNNGG 4 cut(s) 973, 974, 1211, 1393
AflIII ACRYGT 2 cut(s) 378, 1513
AgsI TTSAA 7 cut(s) 167, 207, 599, 760, 1001, 1102, 1457
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AleI CACNNNNGTG 1 cut(s) 540
AloI GAACNNNNNNTCC 1 cut(s) 1548
Alw26I GTCTC 1 cut(s) 1381
AlwI GGATC 2 cut(s) 387, 1539
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 1172
Aor51HI AGCGCT 1 cut(s) 424
AoxI GGCC 4 cut(s) 322, 337, 669, 1076
ApeKI GCWGC 2 cut(s) 56, 829
ArsI GACNNNNNNTTYG 2 cut(s) 393, 425
Asp700I GAANNNNTTC 1 cut(s) 202
Asp718I GGTACC 1 cut(s) 7
AspLEI GCGC 2 cut(s) 425, 1430
AspS9I GGNCC 2 cut(s) 337, 669
AsuC2I CCSGG 1 cut(s) 968
AsuHPI GGTGA 1 cut(s) 464
AsuII TTCGAA 1 cut(s) 1136
AvaI CYCGRG 1 cut(s) 1172
AxyI CCTNAGG 1 cut(s) 834
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 2 cut(s) 7, 1427
BanII GRGCYC 3 cut(s) 117, 582, 1388
BbvI GCAGC 2 cut(s) 68, 816
BccI CCATC 2 cut(s) 404, 617
BciVI GTATCC 2 cut(s) 176, 913
BcnI CCSGG 1 cut(s) 968
BcoDI GTCTC 1 cut(s) 1381
BfaI CTAG 2 cut(s) 776, 1449
BfmI CTRYAG 3 cut(s) 147, 789, 1408
BfoI RGCGCY 2 cut(s) 426, 1431
BfuI GTATCC 2 cut(s) 176, 913
BglII AGATCT 1 cut(s) 1414
BisI GCNGC 3 cut(s) 57, 830, 860
BlsI GCNGC 3 cut(s) 58, 831, 861
Bme1390I CCNGG 1 cut(s) 968
BmeT110I CYCGRG 1 cut(s) 1172
BmgT120I GGNCC 2 cut(s) 337, 669
BmiI GGNNCC 4 cut(s) 9, 1086, 1202, 1429
BmrFI CCNGG 1 cut(s) 968
BmsI GCATC 3 cut(s) 592, 1182, 1572
BpmI CTGGAG 2 cut(s) 74, 525
Bpu14I TTCGAA 1 cut(s) 1136
BpuMI CCSGG 1 cut(s) 968
BsaAI YACGTR 2 cut(s) 349, 1514
BsaHI GRCGYC 2 cut(s) 135, 1428
BsaJI CCNNGG 1 cut(s) 648
Bsc4I CCNNNNNNNGG 4 cut(s) 973, 974, 1211, 1393
Bse1I ACTGG 4 cut(s) 91, 454, 532, 1512
Bse21I CCTNAGG 1 cut(s) 834
Bse3DI GCAATG 1 cut(s) 1202
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 3 cut(s) 628, 1197, 1563
BseLI CCNNNNNNNGG 4 cut(s) 973, 974, 1211, 1393
BseMI GCAATG 1 cut(s) 1202
BseMII CTCAG 5 cut(s) 102, 597, 848, 870, 1224
BseNI ACTGG 4 cut(s) 91, 454, 532, 1512
BseRI GAGGAG 1 cut(s) 693
BseXI GCAGC 2 cut(s) 68, 816
BseYI CCCAGC 2 cut(s) 178, 1008
BshFI GGCC 4 cut(s) 324, 339, 671, 1078
BshNI GGYRCC 2 cut(s) 7, 1427
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 1 cut(s) 968
BslFI GGGAC 2 cut(s) 344, 939
BslI CCNNNNNNNGG 4 cut(s) 973, 974, 1211, 1393
BsmAI GTCTC 1 cut(s) 1381
BsmFI GGGAC 2 cut(s) 344, 939
BsnI GGCC 4 cut(s) 324, 339, 671, 1078
BsoBI CYCGRG 1 cut(s) 1172
Bsp119I TTCGAA 1 cut(s) 1136
Bsp1286I GDGCHC 3 cut(s) 117, 582, 1388
Bsp143I GATC 5 cut(s) 126, 392, 720, 1414, 1531
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 3 cut(s) 684, 860, 933
BspANI GGCC 4 cut(s) 324, 339, 671, 1078
BspCNI CTCAG 5 cut(s) 103, 596, 847, 871, 1225
BspLI GGNNCC 4 cut(s) 9, 1086, 1202, 1429
BspPI GGATC 2 cut(s) 387, 1539
BspT104I TTCGAA 1 cut(s) 1136
BspT107I GGYRCC 2 cut(s) 7, 1427
BsrDI GCAATG 1 cut(s) 1202
BsrI ACTGG 4 cut(s) 91, 454, 532, 1512
BssECI CCNNGG 1 cut(s) 648
BssMI GATC 5 cut(s) 126, 392, 720, 1414, 1531
BssNI GRCGYC 2 cut(s) 135, 1428
BssT1I CCWWGG 1 cut(s) 648
Bst4CI ACNGT 6 cut(s) 274, 754, 895, 1024, 1211, 1525
BstACI GRCGYC 2 cut(s) 135, 1428
BstBAI YACGTR 2 cut(s) 349, 1514
BstBI TTCGAA 1 cut(s) 1136
BstC8I GCNNGC 1 cut(s) 694
BstDEI CTNAG 6 cut(s) 111, 515, 583, 834, 879, 1233
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 3 cut(s) 628, 1197, 1563
BstH2I RGCGCY 2 cut(s) 426, 1431
BstHHI GCGC 2 cut(s) 425, 1430
BstKTI GATC 5 cut(s) 129, 395, 723, 1417, 1534
BstMAI GTCTC 1 cut(s) 1381
BstMBI GATC 5 cut(s) 126, 392, 720, 1414, 1531
BstMWI GCNNNNNNNGC 3 cut(s) 239, 740, 1084
BstNSI RCATGY 2 cut(s) 359, 382
BstSCI CCNGG 1 cut(s) 966
BstSFI CTRYAG 3 cut(s) 147, 789, 1408
BstSNI TACGTA 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 68, 816
BstX2I RGATCY 1 cut(s) 1414
BstYI RGATCY 1 cut(s) 1414
Bsu36I CCTNAGG 1 cut(s) 834
BsuI GTATCC 2 cut(s) 176, 913
BsuRI GGCC 4 cut(s) 324, 339, 671, 1078
BtgI CCRYGG 1 cut(s) 648
BtsCI GGATG 3 cut(s) 628, 1197, 1563
BtsIMutI CAGTG 2 cut(s) 98, 1020
Cac8I GCNNGC 1 cut(s) 694
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 2 cut(s) 425, 1430
Cfr13I GGNCC 2 cut(s) 337, 669
CseI GACGC 1 cut(s) 143
Csp6I GTAC 5 cut(s) 8, 525, 559, 1330, 1511
CviQI GTAC 5 cut(s) 8, 525, 559, 1330, 1511
DdeI CTNAG 6 cut(s) 111, 515, 583, 834, 879, 1233
DinI GGCGCC 1 cut(s) 1429
DpnI GATC 5 cut(s) 128, 394, 722, 1416, 1533
DpnII GATC 5 cut(s) 126, 392, 720, 1414, 1531
EaeI YGGCCR 1 cut(s) 322
Eco105I TACGTA 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 648
Eco24I GRGCYC 3 cut(s) 117, 582, 1388
Eco32I GATATC 1 cut(s) 796
Eco47III AGCGCT 1 cut(s) 424
Eco81I CCTNAGG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 1172
EcoO109I RGGNCCY 1 cut(s) 337
EcoRV GATATC 1 cut(s) 796
EcoT14I CCWWGG 1 cut(s) 648
EcoT38I GRGCYC 3 cut(s) 117, 582, 1388
EgeI GGCGCC 1 cut(s) 1429
EheI GGCGCC 1 cut(s) 1429
ErhI CCWWGG 1 cut(s) 648
FalI AAGNNNNNCTT 6 cut(s) 43, 75, 1053, 1085, 1381, 1413
FaqI GGGAC 2 cut(s) 344, 939
FauNDI CATATG 1 cut(s) 1157
Fnu4HI GCNGC 3 cut(s) 57, 830, 860
FokI GGATG 3 cut(s) 635, 1204, 1550
FriOI GRGCYC 3 cut(s) 117, 582, 1388
Fsp4HI GCNGC 3 cut(s) 57, 830, 860
FspBI CTAG 2 cut(s) 776, 1449
GlaI GCGC 2 cut(s) 424, 1429
GluI GCNGC 3 cut(s) 57, 830, 860
GsaI CCCAGC 2 cut(s) 182, 1012
GsuI CTGGAG 2 cut(s) 74, 525
HaeII RGCGCY 2 cut(s) 426, 1431
HaeIII GGCC 4 cut(s) 324, 339, 671, 1078
HapII CCGG 1 cut(s) 968
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 425, 1430
Hin1I GRCGYC 2 cut(s) 135, 1428
Hin6I GCGC 2 cut(s) 423, 1428
HinP1I GCGC 2 cut(s) 423, 1428
HindIII AAGCTT 2 cut(s) 694, 938
HinfI GANTC 7 cut(s) 254, 309, 1016, 1151, 1235, 1279, 1366
HpaII CCGG 1 cut(s) 968
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 2 cut(s) 455, 980
Hpy188I TCNGA 8 cut(s) 64, 112, 314, 851, 1114, 1234, 1240, 1446
Hpy188III TCNNGA 7 cut(s) 374, 635, 836, 1174, 1344, 1418, 1436
Hpy8I GTNNAC 2 cut(s) 455, 980
HpyAV CCTTC 3 cut(s) 107, 916, 1352
HpyCH4III ACNGT 6 cut(s) 274, 754, 895, 1024, 1211, 1525
HpyCH4IV ACGT 2 cut(s) 348, 1513
HpyCH4V TGCA 5 cut(s) 301, 473, 605, 734, 1195
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 740, 1084
HpyF3I CTNAG 6 cut(s) 111, 515, 583, 834, 879, 1233
HpySE526I ACGT 2 cut(s) 348, 1513
Hsp92I GRCGYC 2 cut(s) 135, 1428
HspAI GCGC 2 cut(s) 423, 1428
KasI GGCGCC 1 cut(s) 1427
KpnI GGTACC 1 cut(s) 11
Kzo9I GATC 5 cut(s) 126, 392, 720, 1414, 1531
LmnI GCTCC 4 cut(s) 506, 689, 785, 1084
Lsp1109I GCAGC 2 cut(s) 68, 816
LweI GCATC 3 cut(s) 592, 1182, 1572
MaeI CTAG 2 cut(s) 776, 1449
MaeII ACGT 2 cut(s) 348, 1513
MaeIII GTNAC 4 cut(s) 409, 533, 748, 914
MalI GATC 5 cut(s) 128, 394, 722, 1416, 1533
MboI GATC 5 cut(s) 126, 392, 720, 1414, 1531
MboII GAAGA 8 cut(s) 210, 611, 668, 730, 835, 880, 1090, 1227
MflI RGATCY 1 cut(s) 1414
MhlI GDGCHC 3 cut(s) 117, 582, 1388
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 8 cut(s) 303, 468, 630, 812, 971, 1131, 1349, 1495
MluNI TGGCCA 1 cut(s) 324
Mly113I GGCGCC 1 cut(s) 1428
MlyI GAGTC 2 cut(s) 1244, 1360
MmeI TCCRAC 1 cut(s) 1027
MnlI CCTC 9 cut(s) 98, 328, 671, 674, 762, 843, 874, 1263, 1387
Mox20I TGGCCA 1 cut(s) 324
MroXI GAANNNNTTC 1 cut(s) 202
MscI TGGCCA 1 cut(s) 324
MseI TTAA 5 cut(s) 384, 765, 1107, 1488, 1500
MslI CAYNNNNRTG 2 cut(s) 330, 540
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 1 cut(s) 968
MspR9I CCNGG 1 cut(s) 968
MwoI GCNNNNNNNGC 3 cut(s) 239, 740, 1084
NarI GGCGCC 1 cut(s) 1428
NciI CCSGG 1 cut(s) 968
NcoI CCATGG 1 cut(s) 648
NdeI CATATG 1 cut(s) 1157
NdeII GATC 5 cut(s) 126, 392, 720, 1414, 1531
NlaIV GGNNCC 4 cut(s) 9, 1086, 1202, 1429
NmuCI GTSAC 4 cut(s) 409, 533, 748, 914
NspI RCATGY 2 cut(s) 359, 382
NspV TTCGAA 1 cut(s) 1136
OliI CACNNNNGTG 1 cut(s) 540
PciI ACATGT 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 5 cut(s) 254, 309, 1016, 1151, 1279
PfoI TCCNGGA 1 cut(s) 966
PkrI GCNGC 3 cut(s) 58, 831, 861
PleI GAGTC 2 cut(s) 1243, 1360
PluTI GGCGCC 1 cut(s) 1431
PpsI GAGTC 2 cut(s) 1243, 1360
Ppu21I YACGTR 2 cut(s) 349, 1514
PscI ACATGT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 804
PspFI CCCAGC 2 cut(s) 178, 1008
PspN4I GGNNCC 4 cut(s) 9, 1086, 1202, 1429
PspPI GGNCC 2 cut(s) 337, 669
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 1414
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 5 cut(s) 9, 526, 560, 1331, 1512
RsaNI GTAC 5 cut(s) 8, 525, 559, 1330, 1511
RseI CAYNNNNRTG 2 cut(s) 330, 540
SaqAI TTAA 5 cut(s) 384, 765, 1107, 1488, 1500
SatI GCNGC 3 cut(s) 57, 830, 860
Sau3AI GATC 5 cut(s) 126, 392, 720, 1414, 1531
Sau96I GGNCC 2 cut(s) 337, 669
SchI GAGTC 2 cut(s) 1244, 1360
ScrFI CCNGG 1 cut(s) 968
SduI GDGCHC 3 cut(s) 117, 582, 1388
SfaNI GCATC 3 cut(s) 592, 1182, 1572
SfcI CTRYAG 3 cut(s) 147, 789, 1408
SfoI GGCGCC 1 cut(s) 1429
SfuI TTCGAA 1 cut(s) 1136
SmiMI CAYNNNNRTG 2 cut(s) 330, 540
SnaBI TACGTA 1 cut(s) 349
Sse9I AATT 8 cut(s) 303, 468, 630, 812, 971, 1131, 1349, 1495
SsiI CCGC 3 cut(s) 684, 860, 933
SspDI GGCGCC 1 cut(s) 1427
SspI AATATT 1 cut(s) 1484
SspMI CTAG 2 cut(s) 776, 1449
StyD4I CCNGG 1 cut(s) 966
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 6 cut(s) 274, 754, 895, 1024, 1211, 1525
TaiI ACGT 2 cut(s) 351, 1516
TaqI TCGA 3 cut(s) 399, 588, 1136
TasI AATT 8 cut(s) 303, 468, 630, 812, 971, 1131, 1349, 1495
TatI WGTACW 1 cut(s) 1329
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 5 cut(s) 254, 309, 1016, 1151, 1279
Tru1I TTAA 5 cut(s) 384, 765, 1107, 1488, 1500
Tru9I TTAA 5 cut(s) 384, 765, 1107, 1488, 1500
TscAI CASTG 2 cut(s) 98, 1027
TseFI GTSAC 4 cut(s) 409, 533, 748, 914
TseI GCWGC 2 cut(s) 56, 829
Tsp45I GTSAC 4 cut(s) 409, 533, 748, 914
TspDTI ATGAA 9 cut(s) 17, 267, 479, 480, 835, 898, 968, 1371, 1569
TspRI CASTG 2 cut(s) 98, 1027
XceI RCATGY 2 cut(s) 359, 382
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 2 cut(s) 776, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.