RchiOBHm_Chr5g0017801

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000956
Physical Location & Seq
Reverse (-)
12397547 .. 12399424
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29804

Sequence Viewer

Length: 1611 bp
ATGAAGATACCAAGCTTGAGATTACTGCTCTTCACATTCTCAGTCCTTTTCCTTTCACTCTCAGTCTCATGCACAACTTCAAATCCCGTTCTCGATGGCTTCCTCCAATGCCTTCCGAAATATTCCAACTCCTCCTACCCAATTTCCGATCAAATTATCACCCAAGAAAGCACCAAATTTCAATCTATTTTCCTGTCATATATTAGAAACCTCAGACTTTTGACTTCCACAACTACAAAACCTTTGGCTATTGTAACGGCCAACCATGAAACCCATGTCCAAGCAACCGTGATTTGTGCAAAAGAAAATGGTTTGCACATGAGAATTCGAAGTGGTGGCCACGATTACGAGGGCTTATCCTTCATATCATATATATCAAATGTTTCCTATATAGTCCTTGACATGTTTAACCTTCGATCGATTAATATTAACGTTGAAGATGAAAGTGCTTGGGTTGAGTCCGGAGCTATCTTAGGTGAACTTTACTATAACATTGCGGAGAAAAGCAAAGTTCATGCATTTCCTGGGGGAGTTTGTCCAACTGTTGGTCTTGGTGGCCTTTTTAGTGGTGGTGGCTATGGTCCCATGATGAGAAAATTTGGGCTTACAGTGGATAATATAGAAGATGCTAGATTAGTAAACGTGAATGGTACAATCGTTGATAGGAGATCCATGGGAGAAGACCTGTTTTGGGCCATTAGAGGAGGTGGTGGAGCAAGCTTTGGAGTCATTCTTTCATGGAAGATCAAATTACTTCCAATTCCACCGAACGTGACTGTTTTCAGAATTACAAGGACACTGGAACAAGGCGCGATAGATGTTCTTTACAGGTGGCAATACGTTGCGCCGAAGCTACCTAAAGACATCTTCATTAGAGCAACTTCACAACTCCATAATAGTACTAGCCAAGTGAGCAAGAAAACTGTGAAAGTGGTATTCAATGGTCTCTATTTGGGACAAAAGGAAAGCCTTCTTGCTTTGGTAAACCACAGTTTTCCTGAACTAGGTTTGGAGCAAAAATATTGCATTGAAATGAGTTGGATAAATGCCACTTTATTCTGGGCCGGCTACCGAGCTGGAACTCCCACAACTGTTCTTCTCGACAGGCCAAAGGCACCAGAAATCTTGTTCAAAAGCAGGTCTGACTATGTGAAAGAACCAATTCCGAAAGCAGCACTCGAAACCATATGGCAGAAGATACTTGCTATGGAGATGCTTCAGATGCAGTGGAACCCTTATGGTGGAAGAATGAGTGAGATTTCCGAGTCAGAGACTCCATTCCCACACAGAGCTGGGAACCTGTTTAAGATTCAGTATTACACTCTTTGGGCGAATGAAACGGACACGAAAAAGTACCTTGACTTGTCAAGCAAGTTTCGTAAAGCAATGACTCCATTTGTGTCCAAGAATCCAAGAGAGGCCTTCCAGAACTACAGGGATCTCGACAATGGTGCCAATTGGAATAACCAGACTGACACCAAGACTGCTACGGTTTATGGAAGAAAATATTTCAAAAACAATTTTTATAGATTGGTAAGTGTGAAAACCAAGGTTGATCCTGAAAACTTTTTCAGGCATGAGCAGAGTATTCCACCACTTCCCCATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

536

Amino Acids

60.66

Weight (kDa)

9.31

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 81 - 221 1.9e-23 FAD binding domain
BBE PF08031 474 - 531 4.3e-17 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1128
AccB1I GGYRCC 2 cut(s) 1114, 1451
AccB7I CCANNNNNTGG 1 cut(s) 545
AccII CGCG 1 cut(s) 812
AccIII TCCGGA 1 cut(s) 461
AciI CCGC 1 cut(s) 497
AclI AACGTT 1 cut(s) 432
AclWI GGATC 3 cut(s) 663, 1446, 1550
AcoI YGGCCR 2 cut(s) 258, 337
AcsI RAATTY 3 cut(s) 176, 324, 596
AcuI CTGAAG 1 cut(s) 1202
AfaI GTAC 3 cut(s) 652, 901, 1355
AfiI CCNNNNNNNGG 4 cut(s) 545, 691, 1004, 1241
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 7 cut(s) 81, 182, 437, 940, 1031, 1132, 1513
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 6 cut(s) 15, 467, 720, 853, 1076, 1292
AluI AGCT 6 cut(s) 15, 467, 720, 853, 1076, 1292
Alw26I GTCTC 3 cut(s) 70, 950, 1265
AlwI GGATC 3 cut(s) 663, 1446, 1550
Aor13HI TCCGGA 1 cut(s) 461
AoxI GGCC 7 cut(s) 258, 337, 556, 693, 1062, 1106, 1419
ApeKI GCWGC 1 cut(s) 1172
ApoI RAATTY 3 cut(s) 176, 324, 596
AseI ATTAAT 1 cut(s) 423
Asp700I GAANNNNTTC 2 cut(s) 969, 1161
AspLEI GCGC 2 cut(s) 812, 847
AspS9I GGNCC 3 cut(s) 581, 693, 1062
AsuHPI GGTGA 2 cut(s) 151, 488
AsuII TTCGAA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 581
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 2 cut(s) 1114, 1451
BbsI GAAGAC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 1184
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 1433, 1467
BciT130I CCWGG 1 cut(s) 525
BcoDI GTCTC 3 cut(s) 70, 950, 1265
BfaI CTAG 3 cut(s) 630, 903, 1004
BfmI CTRYAG 1 cut(s) 1432
BfuAI ACCTGC 1 cut(s) 1128
BisI GCNGC 1 cut(s) 1173
BlsI GCNGC 1 cut(s) 1174
BmcAI AGTACT 1 cut(s) 901
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 3 cut(s) 581, 693, 1062
BmiI GGNNCC 5 cut(s) 583, 1116, 1232, 1298, 1453
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 3 cut(s) 616, 1203, 1212
BpiI GAAGAC 1 cut(s) 687
Bpu14I TTCGAA 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 37
Bsa29I ATCGAT 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 950
BsaJI CCNNGG 3 cut(s) 524, 672, 1548
BsaWI WCCGGW 1 cut(s) 461
Bsc4I CCNNNNNNNGG 4 cut(s) 545, 691, 1004, 1241
Bse118I RCCGGY 1 cut(s) 1064
Bse1I ACTGG 1 cut(s) 804
Bse3DI GCAATG 2 cut(s) 492, 1392
BseAI TCCGGA 1 cut(s) 461
BseBI CCWGG 1 cut(s) 525
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 3 cut(s) 524, 672, 1548
BseLI CCNNNNNNNGG 4 cut(s) 545, 691, 1004, 1241
BseMI GCAATG 2 cut(s) 492, 1392
BseMII CTCAG 3 cut(s) 54, 75, 226
BseNI ACTGG 1 cut(s) 804
BseRI GAGGAG 2 cut(s) 121, 717
BseXI GCAGC 1 cut(s) 1184
BseYI CCCAGC 1 cut(s) 1292
Bsh1236I CGCG 1 cut(s) 812
Bsh1285I CGRYCG 1 cut(s) 419
BshFI GGCC 7 cut(s) 260, 339, 558, 695, 1064, 1108, 1421
BshNI GGYRCC 2 cut(s) 1114, 1451
BshVI ATCGAT 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 419
BsiSI CCGG 2 cut(s) 462, 1065
BslFI GGGAC 2 cut(s) 567, 969
BslI CCNNNNNNNGG 4 cut(s) 545, 691, 1004, 1241
BsmAI GTCTC 3 cut(s) 70, 950, 1265
BsmFI GGGAC 2 cut(s) 567, 969
BsnI GGCC 7 cut(s) 260, 339, 558, 695, 1064, 1108, 1421
Bso31I GGTCTC 1 cut(s) 950
Bsp119I TTCGAA 1 cut(s) 328
Bsp13I TCCGGA 1 cut(s) 461
Bsp143I GATC 6 cut(s) 148, 416, 668, 744, 1438, 1555
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 1 cut(s) 497
BspANI GGCC 7 cut(s) 260, 339, 558, 695, 1064, 1108, 1421
BspCNI CTCAG 3 cut(s) 53, 74, 225
BspDI ATCGAT 1 cut(s) 419
BspEI TCCGGA 1 cut(s) 461
BspFNI CGCG 1 cut(s) 812
BspLI GGNNCC 5 cut(s) 583, 1116, 1232, 1298, 1453
BspMI ACCTGC 1 cut(s) 1128
BspPI GGATC 3 cut(s) 663, 1446, 1550
BspQI GCTCTTC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 328
BspT107I GGYRCC 2 cut(s) 1114, 1451
BspTNI GGTCTC 1 cut(s) 950
BsrDI GCAATG 2 cut(s) 492, 1392
BsrFI RCCGGY 1 cut(s) 1064
BsrI ACTGG 1 cut(s) 804
BssAI RCCGGY 1 cut(s) 1064
BssECI CCNNGG 3 cut(s) 524, 672, 1548
BssMI GATC 6 cut(s) 148, 416, 668, 744, 1438, 1555
BssT1I CCWWGG 2 cut(s) 672, 1548
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 8 cut(s) 289, 544, 610, 778, 925, 992, 1093, 1492
Bst6I CTCTTC 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 718, 1066
BstDEI CTNAG 4 cut(s) 40, 61, 212, 472
BstDSI CCRYGG 1 cut(s) 672
BstENI CCTNNNNNAGG 1 cut(s) 1002
BstFNI CGCG 1 cut(s) 812
BstHHI GCGC 2 cut(s) 812, 847
BstKTI GATC 6 cut(s) 151, 419, 671, 747, 1441, 1558
BstMAI GTCTC 3 cut(s) 70, 950, 1265
BstMBI GATC 6 cut(s) 148, 416, 668, 744, 1438, 1555
BstMCI CGRYCG 1 cut(s) 419
BstMWI GCNNNNNNNGC 2 cut(s) 912, 1222
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 1 cut(s) 1432
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 1 cut(s) 1184
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 2 cut(s) 668, 1438
BstYI RGATCY 2 cut(s) 668, 1438
Bsu15I ATCGAT 1 cut(s) 419
BsuRI GGCC 7 cut(s) 260, 339, 558, 695, 1064, 1108, 1421
BsuTUI ATCGAT 1 cut(s) 419
BtgI CCRYGG 1 cut(s) 672
BtsI GCAGTG 1 cut(s) 1232
BtsIMutI CAGTG 3 cut(s) 615, 797, 1232
BveI ACCTGC 1 cut(s) 1128
Cac8I GCNNGC 2 cut(s) 718, 1066
CfoI GCGC 2 cut(s) 812, 847
Cfr10I RCCGGY 1 cut(s) 1064
Cfr13I GGNCC 3 cut(s) 581, 693, 1062
ClaI ATCGAT 1 cut(s) 419
Csp6I GTAC 3 cut(s) 651, 900, 1354
CviQI GTAC 3 cut(s) 651, 900, 1354
DdeI CTNAG 4 cut(s) 40, 61, 212, 472
DpnI GATC 6 cut(s) 150, 418, 670, 746, 1440, 1557
DpnII GATC 6 cut(s) 148, 416, 668, 744, 1438, 1555
EaeI YGGCCR 2 cut(s) 258, 337
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco130I CCWWGG 2 cut(s) 672, 1548
Eco147I AGGCCT 1 cut(s) 1421
Eco31I GGTCTC 1 cut(s) 950
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 1202
EcoNI CCTNNNNNAGG 1 cut(s) 1002
EcoRI GAATTC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 672, 1548
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 672, 1548
FaqI GGGAC 2 cut(s) 567, 969
FauNDI CATATG 1 cut(s) 1187
Fnu4HI GCNGC 1 cut(s) 1173
Fsp4HI GCNGC 1 cut(s) 1173
FspBI CTAG 3 cut(s) 630, 903, 1004
GlaI GCGC 2 cut(s) 811, 846
GluI GCNGC 1 cut(s) 1173
GsaI CCCAGC 1 cut(s) 1296
HaeIII GGCC 7 cut(s) 260, 339, 558, 695, 1064, 1108, 1421
HapII CCGG 2 cut(s) 462, 1065
HhaI GCGC 2 cut(s) 812, 847
Hin6I GCGC 2 cut(s) 810, 845
HinP1I GCGC 2 cut(s) 810, 845
HindIII AAGCTT 2 cut(s) 13, 718
HinfI GANTC 7 cut(s) 458, 726, 1265, 1273, 1309, 1390, 1408
HpaII CCGG 2 cut(s) 462, 1065
HphI GGTGA 2 cut(s) 151, 488
Hpy166II GTNNAC 3 cut(s) 479, 640, 985
Hpy188I TCNGA 9 cut(s) 117, 148, 215, 785, 1144, 1167, 1221, 1264, 1270
Hpy188III TCNNGA 7 cut(s) 92, 462, 998, 1100, 1426, 1442, 1559
Hpy8I GTNNAC 3 cut(s) 479, 640, 985
HpyAV CCTTC 5 cut(s) 122, 370, 422, 980, 1432
HpyCH4III ACNGT 8 cut(s) 289, 544, 610, 778, 925, 992, 1093, 1492
HpyCH4IV ACGT 4 cut(s) 432, 642, 771, 840
HpyCH4V TGCA 6 cut(s) 72, 299, 316, 518, 1026, 1225
HpyF10VI GCNNNNNNNGC 2 cut(s) 912, 1222
HpyF3I CTNAG 4 cut(s) 40, 61, 212, 472
HpySE526I ACGT 4 cut(s) 432, 642, 771, 840
HspAI GCGC 2 cut(s) 810, 845
Kpn2I TCCGGA 1 cut(s) 461
KroI GCCGGC 1 cut(s) 1064
KroNI GCCGGC 1 cut(s) 1066
Kzo9I GATC 6 cut(s) 148, 416, 668, 744, 1438, 1555
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 3 cut(s) 464, 713, 1012
Lsp1109I GCAGC 1 cut(s) 1184
LweI GCATC 3 cut(s) 616, 1203, 1212
MaeI CTAG 3 cut(s) 630, 903, 1004
MaeII ACGT 4 cut(s) 432, 642, 771, 840
MaeIII GTNAC 2 cut(s) 253, 772
MalI GATC 6 cut(s) 150, 418, 670, 746, 1440, 1557
MboI GATC 6 cut(s) 148, 416, 668, 744, 1438, 1555
MfeI CAATTG 1 cut(s) 1456
MflI RGATCY 2 cut(s) 668, 1438
MlsI TGGCCA 1 cut(s) 339
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 5 cut(s) 467, 735, 1267, 1274, 1384
MmeI TCCRAC 3 cut(s) 150, 563, 1019
MnlI CCTC 7 cut(s) 113, 142, 221, 343, 695, 698, 1411
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 520
MroI TCCGGA 1 cut(s) 461
MroNI GCCGGC 1 cut(s) 1064
MroXI GAANNNNTTC 2 cut(s) 969, 1161
MscI TGGCCA 1 cut(s) 339
MseI TTAA 4 cut(s) 408, 423, 429, 1305
MslI CAYNNNNRTG 1 cut(s) 1031
Msp20I TGGCCA 1 cut(s) 339
MspI CCGG 2 cut(s) 462, 1065
MspR9I CCNGG 1 cut(s) 525
MunI CAATTG 1 cut(s) 1456
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 2 cut(s) 912, 1222
NaeI GCCGGC 1 cut(s) 1066
NcoI CCATGG 1 cut(s) 672
NdeI CATATG 1 cut(s) 1187
NdeII GATC 6 cut(s) 148, 416, 668, 744, 1438, 1555
NgoMIV GCCGGC 1 cut(s) 1064
NlaIV GGNNCC 5 cut(s) 583, 1116, 1232, 1298, 1453
NmuCI GTSAC 1 cut(s) 772
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 1 cut(s) 328
PceI AGGCCT 1 cut(s) 1421
PciI ACATGT 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 35
PdiI GCCGGC 1 cut(s) 1066
PdmI GAANNNNTTC 2 cut(s) 969, 1161
PfeI GAWTC 2 cut(s) 1309, 1408
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 1 cut(s) 1174
Ple19I CGATCG 1 cut(s) 419
PleI GAGTC 5 cut(s) 466, 734, 1267, 1273, 1384
PpsI GAGTC 5 cut(s) 466, 734, 1267, 1273, 1384
PscI ACATGT 1 cut(s) 402
PshBI ATTAAT 1 cut(s) 423
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 1292
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 5 cut(s) 583, 1116, 1232, 1298, 1453
PspPI GGNCC 3 cut(s) 581, 693, 1062
PsuI RGATCY 2 cut(s) 668, 1438
PvuI CGATCG 1 cut(s) 419
RsaI GTAC 3 cut(s) 652, 901, 1355
RsaNI GTAC 3 cut(s) 651, 900, 1354
RseI CAYNNNNRTG 1 cut(s) 1031
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 4 cut(s) 408, 423, 429, 1305
SatI GCNGC 1 cut(s) 1173
Sau3AI GATC 6 cut(s) 148, 416, 668, 744, 1438, 1555
Sau96I GGNCC 3 cut(s) 581, 693, 1062
ScaI AGTACT 1 cut(s) 901
SchI GAGTC 5 cut(s) 467, 735, 1267, 1274, 1384
ScrFI CCNGG 1 cut(s) 525
SfaNI GCATC 3 cut(s) 616, 1203, 1212
SfcI CTRYAG 1 cut(s) 1432
SfuI TTCGAA 1 cut(s) 328
SinI GGWCC 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 1031
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 1421
SsiI CCGC 1 cut(s) 497
SspI AATATT 4 cut(s) 122, 427, 1022, 1508
SspMI CTAG 3 cut(s) 630, 903, 1004
StuI AGGCCT 1 cut(s) 1421
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 2 cut(s) 672, 1548
TaaI ACNGT 8 cut(s) 289, 544, 610, 778, 925, 992, 1093, 1492
TaiI ACGT 4 cut(s) 435, 645, 774, 843
TaqI TCGA 7 cut(s) 93, 328, 415, 419, 1101, 1179, 1443
TatI WGTACW 1 cut(s) 899
TfiI GAWTC 2 cut(s) 1309, 1408
Tru1I TTAA 4 cut(s) 408, 423, 429, 1305
Tru9I TTAA 4 cut(s) 408, 423, 429, 1305
TscAI CASTG 3 cut(s) 615, 804, 1232
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 1 cut(s) 1172
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 8 cut(s) 17, 282, 352, 456, 503, 726, 859, 1350
TspGWI ACGGA 1 cut(s) 1355
TspRI CASTG 3 cut(s) 615, 804, 1232
Van91I CCANNNNNTGG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 581
VspI ATTAAT 1 cut(s) 423
XagI CCTNNNNNAGG 1 cut(s) 1002
XapI RAATTY 3 cut(s) 176, 324, 596
XceI RCATGY 1 cut(s) 406
XmnI GAANNNNTTC 2 cut(s) 969, 1161
XspI CTAG 3 cut(s) 630, 903, 1004
ZrmI AGTACT 1 cut(s) 901
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.