Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000956

Physical Location & Seq

Genomic Coordinates Forward (+)

81759222 .. 81759974

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTTCAAGTGAAGAAAAATAGTACTTCAGGTAAATTGGCTGTGGAAGTGTCATTCATCTGTCATTATTTGGGAGATAATGAGAAACTTCTTTCATTGATGAATCGGAATTTTCCTGAATTGGGTTTGCAGCAAAATGATTGCTTTGAAATGAGTTGGGTAGAATCTACTGTGTTCTGGGGTAACCACCCAATTGGAACTCCCATAGCTGTTCTGCTTGATAGGCCGATGGGGCCACCAGATTTCTTCAAGAGCAAGTCAGACTATGTGAAAGAGCCGATTCCGAAACATGGAATAGAATCCATATTGGACTTGATGCTAAAGACGGGTCTAGATAAACTGTACATGGAATGGAACCCTTATGGTGGAAGAATGAGTGAGATTTCAGAGTCGGAAACTCCATTCCCTCACAGGGCTGGAAACCTGTTTTTGATTCAGTATTTGGGATATTGGAAAGAAGACAAGGCTGAGACAGCCCACAGCTACCTTGACTCGATTAGCAAAATGTATCAAGAAATGACTCCATTTGTGTCCAAGACCCCAAGAGAGGCCTTCCTAAACTATAGGGATCTTGACCTTGGGGCCAGTAAGGGTAATCAGACTAAAGTTGAAACTGCAAGAGTTTATGGAAGCATGTATTTTAAAGAAAACTTTGATAGACTGGTACGTGTGAAAACTGCGGTTGATCCTCAGAATTTTTCAAGAATGAACAGAGCATCCCACCACTGTAGAGGCGATAATAAACGACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

250

Amino Acids

28.79

Weight (kDa)

7.71

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BBE	PF08031	184 - 237	3.9e-14	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26380 AT1G26390 AT1G26400 AT1G26410 AT1G26420 AT4G20800
fragaria_vesca	FvH4_3g11042 FvH4_3g11043 FvH4_3g11044 FvH4_3g11090
malus_domestica	MD05G1266700.v1.1 MD05G1266800.v1.1 MD05G1267200.v1.1 MD05G1267300.v1.1 MD10G1243900.v1.1 MD10G1244000.v1.1
prunus_persica	Prupe.1G032800_v2.0.a1 Prupe.4G092300_v2.0.a1 Prupe.4G098500_v2.0.a1 Prupe.4G098600_v2.0.a1 Prupe.4G098700_v2.0.a1 Prupe.4G098900_v2.0.a1 Prupe.4G099000_v2.0.a1 Prupe.4G099100_v2.0.a1 Prupe.4G099200_v2.0.a1 Prupe.4G099400_v2.0.a1 Prupe.4G230400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0017771 RchiOBHm_Chr5g0017801 RchiOBHm_Chr5g0017831 RchiOBHm_Chr5g0017861 RchiOBHm_Chr5g0017931 RchiOBHm_Chr5g0017951 RchiOBHm_Chr5g0017981
rosa_laevigata	RLG00000032314 RLG00000032315 RLG00000032316 RLG00000032324 RLG00000032325 RLG00000032328 RLG00000032349
rosa_multiflora	Rmu_sc0003375.1_g000007 Rmu_sc0003834.1_g000007 Rmu_sc0003834.1_g000013 Rmu_sc0003834.1_g000014 Rmu_sc0005929.1_g000010 Rmu_sc0005929.1_g000016 Rmu_sc0011118.1_g000003 Rmu_sc0011171.1_g000007 Rmu_sc0013814.1_g000002 Rmu_sc0014753.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059450 Rroxscaffold_1G00059620 Rroxscaffold_1G00059700 Rroxscaffold_1G00059710
rosa_rugosa	Rorug05G0038600 Rorug05G0038700 Rorug05G0038900 Rorug05G0039200 Rorug05G0039300
rosa_wichuraiana	Rw5G011460 Rw5G011500 Rw5G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	680
AclWI	GGATC	2 cut(s)	576, 680
AcsI	RAATTY	2 cut(s)	109, 694
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	3 cut(s)	25, 344, 666
AfiI	CCNNNNNNNGG	5 cut(s)	122, 290, 365, 412, 547
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	5 cut(s)	8, 149, 250, 611, 702
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	2 cut(s)	209, 483
AluI	AGCT	2 cut(s)	209, 483
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	576, 680
AoxI	GGCC	4 cut(s)	224, 233, 549, 582
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	109, 694
AspS9I	GGNCC	2 cut(s)	233, 582
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	332, 751
BfmI	CTRYAG	2 cut(s)	562, 727
BglI	GCCNNNNNGGC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
BmcAI	AGTACT	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	233, 582
BmiI	GGNNCC	3 cut(s)	234, 356, 583
BmsI	GCATC	2 cut(s)	306, 725
BpiI	GAAGAC	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 290, 365, 412, 547
Bse1I	ACTGG	2 cut(s)	585, 666
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	1 cut(s)	716
BseLI	CCNNNNNNNGG	5 cut(s)	122, 290, 365, 412, 547
BseMII	CTCAG	2 cut(s)	459, 704
BseNI	ACTGG	2 cut(s)	585, 666
BseXI	GCAGC	1 cut(s)	142
BshFI	GGCC	4 cut(s)	226, 235, 551, 584
BslI	CCNNNNNNNGG	5 cut(s)	122, 290, 365, 412, 547
BsmAI	GTCTC	1 cut(s)	464
BsnI	GGCC	4 cut(s)	226, 235, 551, 584
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	568, 685
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	4 cut(s)	226, 235, 551, 584
BspCNI	CTCAG	2 cut(s)	460, 703
BspLI	GGNNCC	3 cut(s)	234, 356, 583
BspPI	GGATC	2 cut(s)	576, 680
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	585, 666
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	2 cut(s)	568, 685
BssT1I	CCWWGG	1 cut(s)	577
Bst4CI	ACNGT	3 cut(s)	172, 342, 728
BstAUI	TGTACA	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	668
BstDEI	CTNAG	2 cut(s)	468, 690
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	716
BstKTI	GATC	2 cut(s)	571, 688
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	568, 685
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 232, 473
BstNSI	RCATGY	1 cut(s)	637
BstPI	GGTNACC	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	562, 727
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	4 cut(s)	226, 235, 551, 584
BtsCI	GGATG	1 cut(s)	716
BtsIMutI	CAGTG	1 cut(s)	724
Cfr13I	GGNCC	2 cut(s)	233, 582
Csp6I	GTAC	3 cut(s)	24, 343, 665
CviAII	CATG	3 cut(s)	290, 346, 634
CviQI	GTAC	3 cut(s)	24, 343, 665
DdeI	CTNAG	2 cut(s)	468, 690
DpnI	GATC	2 cut(s)	570, 687
DpnII	GATC	2 cut(s)	568, 685
DraI	TTTAAA	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	3 cut(s)	293, 349, 637
FaiI	YATR	9 cut(s)	206, 267, 291, 305, 347, 363, 564, 627, 635
FatI	CATG	3 cut(s)	289, 345, 633
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	703
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	332, 751
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	226, 235, 551, 584
Hin1II	CATG	3 cut(s)	293, 349, 637
HinfI	GANTC	8 cut(s)	103, 164, 280, 299, 389, 433, 491, 520
Hpy188I	TCNGA	7 cut(s)	108, 262, 285, 388, 394, 600, 693
Hpy188III	TCNNGA	6 cut(s)	116, 250, 332, 512, 572, 702
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	3 cut(s)	172, 342, 728
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	2 cut(s)	130, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 232, 473
HpyF3I	CTNAG	2 cut(s)	468, 690
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	3 cut(s)	293, 349, 637
Kzo9I	GATC	2 cut(s)	568, 685
LpnPI	CCDG	9 cut(s)	15, 129, 163, 252, 397, 402, 437, 598, 647
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	2 cut(s)	306, 725
MaeI	CTAG	2 cut(s)	332, 751
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	570, 687
MboI	GATC	2 cut(s)	568, 685
MboII	GAAGA	4 cut(s)	25, 238, 381, 470
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	5 cut(s)	35, 109, 119, 192, 694
MlyI	GAGTC	3 cut(s)	398, 485, 514
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	4 cut(s)	417, 541, 699, 725
MseI	TTAA	1 cut(s)	642
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	223, 232, 473
NdeII	GATC	2 cut(s)	568, 685
NlaIII	CATG	3 cut(s)	293, 349, 637
NlaIV	GGNNCC	3 cut(s)	234, 356, 583
NspI	RCATGY	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	551
PfeI	GAWTC	5 cut(s)	103, 164, 280, 299, 433
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	3 cut(s)	397, 485, 514
PpsI	GAGTC	3 cut(s)	397, 485, 514
Ppu21I	YACGTR	1 cut(s)	668
PspEI	GGTNACC	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	234, 356, 583
PspPI	GGNCC	2 cut(s)	233, 582
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	3 cut(s)	25, 344, 666
RsaNI	GTAC	3 cut(s)	24, 343, 665
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	568, 685
Sau96I	GGNCC	2 cut(s)	233, 582
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	3 cut(s)	398, 485, 514
SetI	ASST	7 cut(s)	34, 211, 426, 485, 489, 579, 670
SfaNI	GCATC	2 cut(s)	306, 725
SfcI	CTRYAG	2 cut(s)	562, 727
SfiI	GGCCNNNNNGGCC	1 cut(s)	232
Sse9I	AATT	5 cut(s)	35, 109, 119, 192, 694
SseBI	AGGCCT	1 cut(s)	551
SsiI	CCGC	1 cut(s)	680
SspMI	CTAG	2 cut(s)	332, 751
StuI	AGGCCT	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	3 cut(s)	172, 342, 728
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	1 cut(s)	494
TasI	AATT	5 cut(s)	35, 109, 119, 192, 694
TatI	WGTACW	2 cut(s)	23, 342
TfiI	GAWTC	5 cut(s)	103, 164, 280, 299, 433
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	1 cut(s)	731
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	4 cut(s)	46, 84, 116, 722
TspRI	CASTG	1 cut(s)	731
XapI	RAATTY	2 cut(s)	109, 694
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	1 cut(s)	637
XspI	CTAG	2 cut(s)	332, 751
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.