Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000956

Physical Location & Seq

Genomic Coordinates Reverse (-)

13558677 .. 13560109

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032325

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATGATGAACTCTTAATAGTTCATACTATAAATATGGCCTACGATTCACCGCTGTCATACATCAGAAACGGCAGATATTTAACCCCTACAACTCCGAAACCATTGGCTATTGTAACAGCCAAGCATGAATCCCACGTGCAAGCAACTGTGATCTGTGCAAAGCGGCATGGCTTGCAGATTAGAATCCGAAGTGGAGGCCACGATTACGAAGGTCTATCTTACGTGTCACATGTTCCCTTTGTAATTCTTGGCATGTTTCATCTCCGCGCCATTCATGTTGATGTCGCGGATGAGAGTGCTTGGGTAGAGTCTGGGGCTACTGTTGGTGAACTTTACTATGAAATCGCAAAGAACAGTAAAGTTCATGGGTTTTCAGCTGCAGCTGGTCCAACTGTCGGTGTTGGTGGTCACTTTAGTGGCGGTGGGTATGGTGTCATGATGAGAAAATATGGGCTCACCGTGGATAACATTGAAGATGCTAAACTAGTTAATGTGAATGGTACAGTTCTTGATAGAAAGTCTATGGGAGAAAATCTTTTTTGGGCCATTAGAGGTGGTGGTGGAGCAAGCTTTGGAGTCATTTTGTCATGGAAAATAAAGCTGCTTCCAGTGCCAGCCAAAGTGACTGTATTCAACATCAGAAGGACCCTTGAGCAAGGCGCTACAGATGTTCTTTACCGGTGGCAACACGCAGTGGCGGAGTCAGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

239

Amino Acids

25.97

Weight (kDa)

7.91

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	35 - 171	2.5e-26	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26380 AT1G26390 AT1G26400 AT1G26410 AT1G26420 AT4G20800
fragaria_vesca	FvH4_3g11042 FvH4_3g11043 FvH4_3g11044 FvH4_3g11090
malus_domestica	MD05G1266700.v1.1 MD05G1266800.v1.1 MD05G1267200.v1.1 MD05G1267300.v1.1 MD10G1243900.v1.1 MD10G1244000.v1.1
prunus_persica	Prupe.1G032800_v2.0.a1 Prupe.4G092300_v2.0.a1 Prupe.4G098500_v2.0.a1 Prupe.4G098600_v2.0.a1 Prupe.4G098700_v2.0.a1 Prupe.4G098900_v2.0.a1 Prupe.4G099000_v2.0.a1 Prupe.4G099100_v2.0.a1 Prupe.4G099200_v2.0.a1 Prupe.4G099400_v2.0.a1 Prupe.4G230400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0017771 RchiOBHm_Chr5g0017801 RchiOBHm_Chr5g0017831 RchiOBHm_Chr5g0017861 RchiOBHm_Chr5g0017931 RchiOBHm_Chr5g0017951 RchiOBHm_Chr5g0017981
rosa_laevigata	RLG00000032314 RLG00000032315 RLG00000032316 RLG00000032324 RLG00000032325 RLG00000032328 RLG00000032349
rosa_multiflora	Rmu_sc0003375.1_g000007 Rmu_sc0003834.1_g000007 Rmu_sc0003834.1_g000013 Rmu_sc0003834.1_g000014 Rmu_sc0005929.1_g000010 Rmu_sc0005929.1_g000016 Rmu_sc0011118.1_g000003 Rmu_sc0011171.1_g000007 Rmu_sc0013814.1_g000002 Rmu_sc0014753.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059450 Rroxscaffold_1G00059620 Rroxscaffold_1G00059700 Rroxscaffold_1G00059710
rosa_rugosa	Rorug05G0038600 Rorug05G0038700 Rorug05G0038900 Rorug05G0039200 Rorug05G0039300
rosa_wichuraiana	Rw5G011460 Rw5G011500 Rw5G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	270, 290
AciI	CCGC	6 cut(s)	53, 166, 268, 290, 423, 701
AcsI	RAATTY	1 cut(s)	711
AcvI	CACGTG	1 cut(s)	139
AdeI	CACNNNGTG	1 cut(s)	697
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflIII	ACRYGT	2 cut(s)	225, 232
AgeI	ACCGGT	1 cut(s)	681
AgsI	TTSAA	2 cut(s)	476, 637
AhlI	ACTAGT	1 cut(s)	487
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	4 cut(s)	380, 386, 573, 604
AluI	AGCT	4 cut(s)	380, 386, 573, 604
AoxI	GGCC	3 cut(s)	39, 199, 546
ApeKI	GCWGC	3 cut(s)	380, 383, 604
ApoI	RAATTY	1 cut(s)	711
AsiGI	ACCGGT	1 cut(s)	681
AspLEI	GCGC	2 cut(s)	272, 665
AspS9I	GGNCC	3 cut(s)	389, 546, 648
AsuHPI	GGTGA	3 cut(s)	42, 341, 451
AvaII	GGWCC	2 cut(s)	389, 648
BanII	GRGCYC	1 cut(s)	459
BbrPI	CACGTG	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	367, 395, 591
BceAI	ACGGC	1 cut(s)	88
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	2 cut(s)	381, 666
BfoI	RGCGCY	1 cut(s)	666
BisI	GCNGC	4 cut(s)	167, 381, 384, 605
BlsI	GCNGC	4 cut(s)	168, 382, 385, 606
Bme18I	GGWCC	2 cut(s)	389, 648
BmgT120I	GGNCC	3 cut(s)	389, 546, 648
BmiI	GGNNCC	1 cut(s)	650
BmsI	GCATC	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	674
BsaAI	YACGTR	2 cut(s)	139, 226
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse118I	RCCGGY	1 cut(s)	681
Bse1I	ACTGG	1 cut(s)	611
Bse8I	GATNNNNATC	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	10, 298
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	611
BseXI	GCAGC	3 cut(s)	367, 395, 591
Bsh1236I	CGCG	2 cut(s)	270, 290
BshFI	GGCC	3 cut(s)	41, 201, 548
BshTI	ACCGGT	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	682
BslI	CCNNNNNNNGG	1 cut(s)	398
BsnI	GGCC	3 cut(s)	41, 201, 548
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	6 cut(s)	53, 166, 268, 290, 423, 701
BspANI	GGCC	3 cut(s)	41, 201, 548
BspFNI	CGCG	2 cut(s)	270, 290
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	650
BspMAI	CTGCAG	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	1 cut(s)	681
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	1 cut(s)	153
Bst4CI	ACNGT	7 cut(s)	151, 325, 359, 397, 463, 508, 631
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstBAI	YACGTR	2 cut(s)	139, 226
BstC8I	GCNNGC	4 cut(s)	144, 176, 571, 618
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	10, 298
BstFNI	CGCG	2 cut(s)	270, 290
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	2 cut(s)	272, 665
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 613
BstNSI	RCATGY	2 cut(s)	236, 259
BstSFI	CTRYAG	2 cut(s)	381, 666
BstUI	CGCG	2 cut(s)	270, 290
BstV1I	GCAGC	3 cut(s)	367, 395, 591
BsuRI	GGCC	3 cut(s)	41, 201, 548
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	10, 298
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	618, 702
Cac8I	GCNNGC	4 cut(s)	144, 176, 571, 618
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	2 cut(s)	272, 665
Cfr10I	RCCGGY	1 cut(s)	681
Cfr13I	GGNCC	3 cut(s)	389, 546, 648
Csp6I	GTAC	1 cut(s)	504
CspAI	ACCGGT	1 cut(s)	681
CviAII	CATG	8 cut(s)	128, 170, 233, 256, 278, 368, 439, 591
CviQI	GTAC	1 cut(s)	504
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
DraIII	CACNNNGTG	1 cut(s)	697
EciI	GGCGGA	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	389, 648
Eco72I	CACGTG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	459
FaeI	CATG	8 cut(s)	131, 173, 236, 259, 281, 371, 442, 594
FatI	CATG	8 cut(s)	127, 169, 232, 255, 277, 367, 438, 590
Fnu4HI	GCNGC	4 cut(s)	167, 381, 384, 605
FokI	GGATG	2 cut(s)	17, 305
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	4 cut(s)	167, 381, 384, 605
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	2 cut(s)	271, 664
GluI	GCNGC	4 cut(s)	167, 381, 384, 605
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	3 cut(s)	41, 201, 548
HapII	CCGG	1 cut(s)	682
HhaI	GCGC	2 cut(s)	272, 665
Hin1II	CATG	8 cut(s)	131, 173, 236, 259, 281, 371, 442, 594
Hin6I	GCGC	2 cut(s)	270, 663
HinP1I	GCGC	2 cut(s)	270, 663
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	6 cut(s)	47, 131, 186, 311, 579, 704
HpaII	CCGG	1 cut(s)	682
HphI	GGTGA	3 cut(s)	42, 341, 451
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	5 cut(s)	68, 99, 191, 644, 709
Hpy188III	TCNNGA	2 cut(s)	439, 512
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	206, 639
HpyCH4III	ACNGT	7 cut(s)	151, 325, 359, 397, 463, 508, 631
HpyCH4IV	ACGT	2 cut(s)	138, 225
HpyCH4V	TGCA	4 cut(s)	142, 161, 178, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 613
HpySE526I	ACGT	2 cut(s)	138, 225
Hsp92II	CATG	8 cut(s)	131, 173, 236, 259, 281, 371, 442, 594
HspAI	GCGC	2 cut(s)	270, 663
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	566
LpnPI	CCDG	5 cut(s)	300, 372, 624, 630, 695
Lsp1109I	GCAGC	3 cut(s)	367, 395, 591
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	2 cut(s)	138, 225
MaeIII	GTNAC	4 cut(s)	115, 228, 410, 625
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	2 cut(s)	246, 711
MlyI	GAGTC	3 cut(s)	320, 588, 713
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	2 cut(s)	191, 548
MseI	TTAA	4 cut(s)	17, 83, 492, 715
MslI	CAYNNNNRTG	2 cut(s)	282, 417
MspA1I	CMGCKG	3 cut(s)	55, 380, 386
MspI	CCGG	1 cut(s)	682
MvnI	CGCG	2 cut(s)	270, 290
MwoI	GCNNNNNNNGC	2 cut(s)	175, 613
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	8 cut(s)	131, 173, 236, 259, 281, 371, 442, 594
NlaIV	GGNNCC	1 cut(s)	650
NmuCI	GTSAC	3 cut(s)	228, 410, 625
NspI	RCATGY	2 cut(s)	236, 259
OliI	CACNNNNGTG	1 cut(s)	417
PagI	TCATGA	1 cut(s)	438
PciI	ACATGT	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	47, 131, 186
PinAI	ACCGGT	1 cut(s)	681
PkrI	GCNGC	4 cut(s)	168, 382, 385, 606
PleI	GAGTC	3 cut(s)	319, 587, 712
PmaCI	CACGTG	1 cut(s)	139
PmlI	CACGTG	1 cut(s)	139
PpsI	GAGTC	3 cut(s)	319, 587, 712
Ppu21I	YACGTR	2 cut(s)	139, 226
PpuMI	RGGWCCY	1 cut(s)	648
PscI	ACATGT	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	648
PspCI	CACGTG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	650
PspPI	GGNCC	3 cut(s)	389, 546, 648
PspPPI	RGGWCCY	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	385
PvuII	CAGCTG	2 cut(s)	380, 386
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
RseI	CAYNNNNRTG	2 cut(s)	282, 417
SaqAI	TTAA	4 cut(s)	17, 83, 492, 715
SatI	GCNGC	4 cut(s)	167, 381, 384, 605
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	3 cut(s)	389, 546, 648
SchI	GAGTC	3 cut(s)	320, 588, 713
SduI	GDGCHC	1 cut(s)	459
SetI	ASST	8 cut(s)	141, 217, 228, 382, 388, 559, 575, 606
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	2 cut(s)	381, 666
SinI	GGWCC	2 cut(s)	389, 648
SmiMI	CAYNNNNRTG	2 cut(s)	282, 417
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	2 cut(s)	246, 711
SsiI	CCGC	6 cut(s)	53, 166, 268, 290, 423, 701
SspMI	CTAG	1 cut(s)	488
TaaI	ACNGT	7 cut(s)	151, 325, 359, 397, 463, 508, 631
TaiI	ACGT	2 cut(s)	141, 228
TasI	AATT	2 cut(s)	246, 711
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	3 cut(s)	47, 131, 186
Tru1I	TTAA	4 cut(s)	17, 83, 492, 715
Tru9I	TTAA	4 cut(s)	17, 83, 492, 715
TscAI	CASTG	2 cut(s)	618, 702
TseFI	GTSAC	3 cut(s)	228, 410, 625
TseI	GCWGC	3 cut(s)	380, 383, 604
Tsp45I	GTSAC	3 cut(s)	228, 410, 625
TspDTI	ATGAA	7 cut(s)	14, 24, 144, 251, 266, 356, 357
TspRI	CASTG	2 cut(s)	618, 702
VpaK11BI	GGWCC	2 cut(s)	389, 648
XapI	RAATTY	1 cut(s)	711
XceI	RCATGY	2 cut(s)	236, 259
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.