Rmu_sc0014753.1_g000007

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014753.1
OG0000956
Physical Location & Seq
Forward (+)
42057 .. 43214
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014753.1_g000007.1.cds

Sequence Viewer

Length: 1158 bp
atgtttcatctccgcgccattcacgttgatgtcgcggatgagagtgcttgggttgagtctggggctattatgggtgaactttactacgaaatcgcaaagaacagtaaagttcatgggttttcagctgcagctggtgcaactgtcggtgttggtggtcactttagtggcggtgggtatggtgtcatcatgagaaaatatgggctcaccgtggataagattgaagatgctaaactagttaatgtgaatggtacagttcttgatagaaagtctatgggagaagatcttttttgggccattagaggtggtggtggagcaagctttggagtcattttgtcatggaaaataaagctgcttcccgtgccagccaaagtgactgtattcaacatcggaaggacccttgagcaaggcgctacagatgttctttaccggtggcaacacgtcgcacctaagctacctaaagaaatcttcatcagagcaatgcctcaagtgttgaatactagtttgggtaacaagactgtggaagtgtcattcattggtttcttcttgggacaaagtgatgagcttctttcattgataaataggagtcttcctgaattgggtttgcagaaaacagattgctatgaaatgagttgggtagaatctacggtattttgggctaattacgtacccagttggaacttccatatagacgttctacttgaaaggcccaaggggccaacagacaacttcaaaggcaagtctgactacgtgaaagaaacaattccaaaagaagacatagaattcatattgaaggagctacttaagatagaaaacttgtggatgcaatggaacccttacggtggaagaatgagggagatttctgagtcggaaactcccttccctcacagagccggaaacctgtttttgattcaatacgattggtcgtgggaggaagaagggattgaggccaccaacaagtaccttagcttatctagaaaattttacaaaataatgactccatttgtatccaagagaccaagagaggccttccaaaactacagggatcttgacattggggccaatttggataatcagaccatctttaatagaagaccaaggttgatccccaaaactttttcaagcatgaacaaagtattccacctcttgcccagggtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

385

Amino Acids

43.8

Weight (kDa)

8.37

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 15, 35
AciI CCGC 3 cut(s) 13, 35, 168
AclWI GGATC 2 cut(s) 1050, 1096
AcsI RAATTY 2 cut(s) 779, 977
AfaI GTAC 3 cut(s) 250, 666, 959
AfiI CCNNNNNNNGG 2 cut(s) 596, 839
AflII CTTAAG 1 cut(s) 800
AflIII ACRYGT 1 cut(s) 436
AgeI ACCGGT 1 cut(s) 426
AgsI TTSAA 8 cut(s) 221, 382, 493, 701, 730, 790, 911, 1119
AhlI ACTAGT 2 cut(s) 232, 497
AjiI CACGTC 1 cut(s) 439
AjnI CCWGG 1 cut(s) 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 8 cut(s) 125, 131, 318, 349, 451, 562, 796, 966
AluI AGCT 8 cut(s) 125, 131, 318, 349, 451, 562, 796, 966
Alw26I GTCTC 1 cut(s) 1006
AlwI GGATC 2 cut(s) 1050, 1096
AoxI GGCC 6 cut(s) 291, 704, 713, 945, 1023, 1056
ApeKI GCWGC 3 cut(s) 125, 128, 349
ApoI RAATTY 2 cut(s) 779, 977
AsiGI ACCGGT 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 759
AspLEI GCGC 2 cut(s) 17, 410
AspS9I GGNCC 5 cut(s) 291, 393, 705, 713, 1056
AsuHPI GGTGA 2 cut(s) 86, 196
AvaII GGWCC 1 cut(s) 393
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 3 cut(s) 578, 777, 1096
BbvI GCAGC 3 cut(s) 112, 140, 336
BccI CCATC 1 cut(s) 1085
BciT130I CCWGG 1 cut(s) 1150
BciVI GTATCC 1 cut(s) 1015
BcoDI GTCTC 1 cut(s) 1006
BcuI ACTAGT 2 cut(s) 232, 497
BfaI CTAG 3 cut(s) 233, 498, 972
BfmI CTRYAG 3 cut(s) 126, 411, 1036
BfoI RGCGCY 1 cut(s) 411
BfrI CTTAAG 1 cut(s) 800
BfuI GTATCC 1 cut(s) 1015
BglI GCCNNNNNGGC 1 cut(s) 712
BglII AGATCT 1 cut(s) 280
BisI GCNGC 3 cut(s) 126, 129, 350
BlsI GCNGC 3 cut(s) 127, 130, 351
Bme1390I CCNGG 1 cut(s) 1150
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 439
BmgT120I GGNCC 5 cut(s) 291, 393, 705, 713, 1056
BmiI GGNNCC 4 cut(s) 395, 714, 830, 1057
BmrFI CCNGG 1 cut(s) 1150
BmrI ACTGGG 1 cut(s) 663
BmsI GCATC 2 cut(s) 214, 810
BmuI ACTGGG 1 cut(s) 663
BpiI GAAGAC 3 cut(s) 578, 777, 1096
Bpu10I CCTNAGC 2 cut(s) 447, 962
BpuEI CTTGAG 2 cut(s) 419, 468
BsaAI YACGTR 2 cut(s) 664, 748
BsaI GGTCTC 1 cut(s) 1006
BsaJI CCNNGG 5 cut(s) 207, 708, 1094, 1148, 1149
BsaWI WCCGGW 1 cut(s) 426
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 839
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 669
Bse3DI GCAATG 2 cut(s) 483, 830
BseBI CCWGG 1 cut(s) 1150
BseDI CCNNGG 5 cut(s) 207, 708, 1094, 1148, 1149
BseGI GGATG 2 cut(s) 43, 825
BseLI CCNNNNNNNGG 2 cut(s) 596, 839
BseMI GCAATG 2 cut(s) 483, 830
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 669
BseXI GCAGC 3 cut(s) 112, 140, 336
Bsh1236I CGCG 2 cut(s) 15, 35
BshFI GGCC 6 cut(s) 293, 706, 715, 947, 1025, 1058
BshTI ACCGGT 1 cut(s) 426
BsiSI CCGG 2 cut(s) 427, 891
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 2 cut(s) 596, 839
BsmAI GTCTC 1 cut(s) 1006
BsmFI GGGAC 1 cut(s) 561
BsnI GGCC 6 cut(s) 293, 706, 715, 947, 1025, 1058
Bso31I GGTCTC 1 cut(s) 1006
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 3 cut(s) 280, 1042, 1101
BspACI CCGC 3 cut(s) 13, 35, 168
BspANI GGCC 6 cut(s) 293, 706, 715, 947, 1025, 1058
BspCNI CTCAG 1 cut(s) 853
BspFNI CGCG 2 cut(s) 15, 35
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 4 cut(s) 395, 714, 830, 1057
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 2 cut(s) 1050, 1096
BspTI CTTAAG 1 cut(s) 800
BspTNI GGTCTC 1 cut(s) 1006
BsrDI GCAATG 2 cut(s) 483, 830
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 1 cut(s) 669
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 5 cut(s) 207, 708, 1094, 1148, 1149
BssMI GATC 3 cut(s) 280, 1042, 1101
BssT1I CCWWGG 2 cut(s) 708, 1094
Bst2UI CCWGG 1 cut(s) 1150
Bst4CI ACNGT 8 cut(s) 104, 142, 208, 253, 376, 517, 646, 839
BstAFI CTTAAG 1 cut(s) 800
BstAPI GCANNNNNTGC 1 cut(s) 134
BstBAI YACGTR 2 cut(s) 664, 748
BstC8I GCNNGC 2 cut(s) 316, 363
BstDEI CTNAG 3 cut(s) 447, 861, 962
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 43, 825
BstFNI CGCG 2 cut(s) 15, 35
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 2 cut(s) 17, 410
BstKTI GATC 3 cut(s) 283, 1045, 1104
BstMAI GTCTC 1 cut(s) 1006
BstMBI GATC 3 cut(s) 280, 1042, 1101
BstMWI GCNNNNNNNGC 3 cut(s) 134, 358, 712
BstNI CCWGG 1 cut(s) 1150
BstSCI CCNGG 1 cut(s) 1148
BstSFI CTRYAG 3 cut(s) 126, 411, 1036
BstSNI TACGTA 1 cut(s) 664
BstUI CGCG 2 cut(s) 15, 35
BstV1I GCAGC 3 cut(s) 112, 140, 336
BstV2I GAAGAC 3 cut(s) 578, 777, 1096
BstX2I RGATCY 2 cut(s) 280, 1042
BstYI RGATCY 2 cut(s) 280, 1042
BsuI GTATCC 1 cut(s) 1015
BsuRI GGCC 6 cut(s) 293, 706, 715, 947, 1025, 1058
BtgI CCRYGG 1 cut(s) 207
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 2 cut(s) 43, 825
Cac8I GCNNGC 2 cut(s) 316, 363
CciI TCATGA 1 cut(s) 186
CfoI GCGC 2 cut(s) 17, 410
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 5 cut(s) 291, 393, 705, 713, 1056
Csp6I GTAC 3 cut(s) 249, 665, 958
CspAI ACCGGT 1 cut(s) 426
CviAII CATG 4 cut(s) 113, 187, 336, 1123
CviQI GTAC 3 cut(s) 249, 665, 958
DdeI CTNAG 3 cut(s) 447, 861, 962
DpnI GATC 3 cut(s) 282, 1044, 1103
DpnII GATC 3 cut(s) 280, 1042, 1101
Eco105I TACGTA 1 cut(s) 664
Eco130I CCWWGG 2 cut(s) 708, 1094
Eco147I AGGCCT 1 cut(s) 1025
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 1006
Eco47I GGWCC 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 779
EcoRII CCWGG 1 cut(s) 1148
EcoT14I CCWWGG 2 cut(s) 708, 1094
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 2 cut(s) 708, 1094
FaeI CATG 4 cut(s) 116, 190, 339, 1126
FaqI GGGAC 1 cut(s) 561
FatI CATG 4 cut(s) 112, 186, 335, 1122
Fnu4HI GCNGC 3 cut(s) 126, 129, 350
FokI GGATG 2 cut(s) 50, 832
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 3 cut(s) 126, 129, 350
FspBI CTAG 3 cut(s) 233, 498, 972
GlaI GCGC 2 cut(s) 16, 409
GluI GCNGC 3 cut(s) 126, 129, 350
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 6 cut(s) 293, 706, 715, 947, 1025, 1058
HapII CCGG 2 cut(s) 427, 891
HhaI GCGC 2 cut(s) 17, 410
Hin1II CATG 4 cut(s) 116, 190, 339, 1126
Hin6I GCGC 2 cut(s) 15, 408
HinP1I GCGC 2 cut(s) 15, 408
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 7 cut(s) 56, 324, 583, 638, 863, 907, 994
HpaII CCGG 2 cut(s) 427, 891
HphI GGTGA 2 cut(s) 86, 196
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 6 cut(s) 389, 473, 742, 862, 868, 1074
Hpy188III TCNNGA 5 cut(s) 187, 257, 590, 972, 1046
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 5 cut(s) 384, 784, 886, 929, 1036
HpyCH4III ACNGT 8 cut(s) 104, 142, 208, 253, 376, 517, 646, 839
HpyCH4IV ACGT 5 cut(s) 24, 438, 663, 690, 747
HpyCH4V TGCA 4 cut(s) 128, 137, 604, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 358, 712
HpyF3I CTNAG 3 cut(s) 447, 861, 962
HpySE526I ACGT 5 cut(s) 24, 438, 663, 690, 747
Hsp92II CATG 4 cut(s) 116, 190, 339, 1126
HspAI GCGC 2 cut(s) 15, 408
Kzo9I GATC 3 cut(s) 280, 1042, 1101
LmnI GCTCC 2 cut(s) 311, 793
Lsp1109I GCAGC 3 cut(s) 112, 140, 336
LweI GCATC 2 cut(s) 214, 810
MaeI CTAG 3 cut(s) 233, 498, 972
MaeII ACGT 5 cut(s) 24, 438, 663, 690, 747
MaeIII GTNAC 3 cut(s) 155, 370, 506
MalI GATC 3 cut(s) 282, 1044, 1103
MboI GATC 3 cut(s) 280, 1042, 1101
MboII GAAGA 9 cut(s) 233, 290, 457, 532, 578, 782, 855, 944, 1101
MflI RGATCY 2 cut(s) 280, 1042
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 6 cut(s) 593, 658, 759, 779, 977, 1060
MlyI GAGTC 5 cut(s) 65, 333, 592, 872, 988
MmeI TCCRAC 2 cut(s) 653, 846
MnlI CCTC 8 cut(s) 293, 492, 843, 891, 922, 937, 1015, 1151
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 3 cut(s) 237, 801, 1083
MslI CAYNNNNRTG 2 cut(s) 27, 162
MspA1I CMGCKG 2 cut(s) 125, 131
MspCI CTTAAG 1 cut(s) 800
MspI CCGG 2 cut(s) 427, 891
MspR9I CCNGG 1 cut(s) 1150
MvaI CCWGG 1 cut(s) 1150
MvnI CGCG 2 cut(s) 15, 35
MwoI GCNNNNNNNGC 3 cut(s) 134, 358, 712
NdeII GATC 3 cut(s) 280, 1042, 1101
NlaIII CATG 4 cut(s) 116, 190, 339, 1126
NlaIV GGNNCC 4 cut(s) 395, 714, 830, 1057
NmuCI GTSAC 2 cut(s) 155, 370
OliI CACNNNNGTG 1 cut(s) 162
PagI TCATGA 1 cut(s) 186
PasI CCCWGGG 1 cut(s) 1149
PceI AGGCCT 1 cut(s) 1025
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 2 cut(s) 638, 907
PinAI ACCGGT 1 cut(s) 426
PkrI GCNGC 3 cut(s) 127, 130, 351
PleI GAGTC 5 cut(s) 64, 332, 591, 871, 988
PpsI GAGTC 5 cut(s) 64, 332, 591, 871, 988
Ppu21I YACGTR 2 cut(s) 664, 748
PpuMI RGGWCCY 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 1148
PspGI CCWGG 1 cut(s) 1148
PspN4I GGNNCC 4 cut(s) 395, 714, 830, 1057
PspPI GGNCC 5 cut(s) 291, 393, 705, 713, 1056
PspPPI RGGWCCY 1 cut(s) 393
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 2 cut(s) 280, 1042
PvuII CAGCTG 2 cut(s) 125, 131
RsaI GTAC 3 cut(s) 250, 666, 959
RsaNI GTAC 3 cut(s) 249, 665, 958
RseI CAYNNNNRTG 2 cut(s) 27, 162
SaqAI TTAA 3 cut(s) 237, 801, 1083
SatI GCNGC 3 cut(s) 126, 129, 350
Sau3AI GATC 3 cut(s) 280, 1042, 1101
Sau96I GGNCC 5 cut(s) 291, 393, 705, 713, 1056
SchI GAGTC 5 cut(s) 65, 333, 592, 872, 988
ScrFI CCNGG 1 cut(s) 1150
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 2 cut(s) 214, 810
SfcI CTRYAG 3 cut(s) 126, 411, 1036
SfiI GGCCNNNNNGGCC 1 cut(s) 712
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 27, 162
SmlI CTYRAG 3 cut(s) 398, 483, 800
SmoI CTYRAG 3 cut(s) 398, 483, 800
SnaBI TACGTA 1 cut(s) 664
SpeI ACTAGT 2 cut(s) 232, 497
Sse9I AATT 6 cut(s) 593, 658, 759, 779, 977, 1060
SseBI AGGCCT 1 cut(s) 1025
SsiI CCGC 3 cut(s) 13, 35, 168
SspMI CTAG 3 cut(s) 233, 498, 972
StuI AGGCCT 1 cut(s) 1025
StyD4I CCNGG 1 cut(s) 1148
StyI CCWWGG 2 cut(s) 708, 1094
TaaI ACNGT 8 cut(s) 104, 142, 208, 253, 376, 517, 646, 839
TaiI ACGT 5 cut(s) 27, 441, 666, 693, 750
TasI AATT 6 cut(s) 593, 658, 759, 779, 977, 1060
TfiI GAWTC 2 cut(s) 638, 907
Tru1I TTAA 3 cut(s) 237, 801, 1083
Tru9I TTAA 3 cut(s) 237, 801, 1083
TseFI GTSAC 2 cut(s) 155, 370
TseI GCWGC 3 cut(s) 125, 128, 349
Tsp45I GTSAC 2 cut(s) 155, 370
TspDTI ATGAA 7 cut(s) 101, 457, 520, 558, 636, 772, 1139
Vha464I CTTAAG 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 2 cut(s) 779, 977
XbaI TCTAGA 1 cut(s) 971
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 3 cut(s) 233, 498, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.