Rw5G011520

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000956
Physical Location & Seq
Reverse (-)
13246706 .. 13248301
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011520.1

Sequence Viewer

Length: 1596 bp
ATGAAACAAACACTAATGAAGTTGCCGAGTTCTTTAGCAGCAGTTTTCTTCATTCTCTCAACCCTTTGGCTCTCAACTACTTCAAATCCCATTCTCGAAAACTTCCTTAAATGCCTTCCAGAACAAACTCACTCCAACTACTCCATCTCTGAAGCCTTTTACACCCGCCAAAATGCCACTTTTGAATCCGTTCTGCTGGCATACATCAGAAACGGCAGATATTTAACCCCTACAACTCCGAAACCATTGGCTATTGTAACAGCCAAGCATGAATCCCACGTGCAAGCAACTGTGATCTGTGCAAAGCGGCATGGCTTGCAGATTAGAATCCGAAGTGGAGGCCACGATTACGAGGGTCTATCTTACGTGTCACATGTCCCCTTTGTTATTCTTGACATGTTTCATCTCCGCGCCATTCATGTTGATGTCGCGGATGAAAGTGCTTGGGTTGAGTCTGGGGCTATTGTTGGTGAGCTTTACTACGAAATCGCAAAGAACAGTAAAGTTCATGGGTTTTCAGCTGCAGCTGGTCCAACTGTCGGTGTTGGTGGTCACTTTACTGGCGGTGGGTATGGTGTCATGATGAGAAAATATGGGCTCACCGTGGATAACATTGAAGATGCTAGACTAGTTAATGTGAATGGTACTGTTCTTGATAGAAAGTCTATGGGAGAAGATCTTTTTTGGGCCATTAGAGGTGGTGGAGCAAGCTTTGGAGTCATTTTGTCATGGAAAATAAAGCTGCTTCCAGTGCCAGCCAAAGTGACTGTATTCAACATCGGAAGGACCCTTGAGCAAGGCGCTACAGATGTTCTTTACCGGTGGCAACACGTCGCACCTAAGCTACCTAAAGAAATCTTCATCAGAGCAATGCCTCAAGTATTGAATACTAGTTTGGGTAACAAGACTGTGGAAGTGTCATTCATTGGTTTCTTCTTGGGACAAAGTGATGAGCTTCTTTCATTGATAAATAGGAGTCTTCCTGAATTGGGTTTGCAGAAAACAGATTGCTATGAAATGAGTTGGGTAGAATCTACGGTATTTTGGGATGATCACCCACTTGGAACTTCCATAGATGTTCTACTCGAAAGGCCCAGGGGGCCACACCACAGCATGAAAGGTAAGTCTGACTATGTGAAAGAACCAATTCCAAAACAAGACATAGAATTCATATTGAAGGAGCTACTTAAGATGGAAAACTTGTGGATGCAATGGAACCCTTATGGTGGAAGAATGAGTGAGATTTCTGAGTCGGAAACTCCCTTCCCTCACAGAGCCGGAAACCTGTTTTTGATTCAATACTCTTCGTCGTGGGAGGAAGAAGGGATTGAGGCCACCAACAAGTACCTTAGCTTATCTAGAAAATTTTACAAAATAATGACTCCATTTGTATCCAAGAGACCAAGAGAGGCCTTCCAAATCTACAGGGATCTTGACATTGGGGCCAATTTGGATAATCAGACCATCTTTAATATTGCTAGAGTCTATGGAAGCAAATACTTTGAAGGTAATTTTGAAAGGCTGGTACATGTGAAGACCGAGGTTGATCCCCAAAACTTTTTCAAGCATGAACAAAGTATTCCACCTCTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

531

Amino Acids

59.98

Weight (kDa)

7.01

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 82 - 218 4.8e-26 FAD binding domain
BBE PF08031 475 - 528 1.3e-15 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 411, 431
AciI CCGC 5 cut(s) 166, 307, 409, 431, 564
AclWI GGATC 2 cut(s) 1437, 1541
AcsI RAATTY 2 cut(s) 1166, 1364
AcuI CTGAAG 1 cut(s) 171
AcvI CACGTG 1 cut(s) 280
AfaI GTAC 3 cut(s) 646, 1346, 1527
AfiI CCNNNNNNNGG 3 cut(s) 539, 989, 1226
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 5 cut(s) 366, 373, 396, 829, 1528
AgeI ACCGGT 1 cut(s) 819
AhlI ACTAGT 2 cut(s) 628, 890
AjiI CACGTC 1 cut(s) 832
AjnI CCWGG 1 cut(s) 1094
AjuI GAANNNNNNNTTGG 2 cut(s) 878, 910
AluBI AGCT 9 cut(s) 475, 521, 527, 711, 742, 844, 955, 1183, 1353
AluI AGCT 9 cut(s) 475, 521, 527, 711, 742, 844, 955, 1183, 1353
Alw26I GTCTC 1 cut(s) 1393
AlwI GGATC 2 cut(s) 1437, 1541
AoxI GGCC 7 cut(s) 340, 687, 1091, 1100, 1332, 1410, 1443
ApeKI GCWGC 4 cut(s) 38, 521, 524, 742
ApoI RAATTY 2 cut(s) 1166, 1364
AsiGI ACCGGT 1 cut(s) 819
Asp700I GAANNNNTTC 2 cut(s) 189, 1146
AspLEI GCGC 2 cut(s) 413, 803
AspS9I GGNCC 6 cut(s) 530, 687, 786, 1092, 1100, 1443
AsuHPI GGTGA 3 cut(s) 482, 592, 1046
AvaII GGWCC 2 cut(s) 530, 786
BanII GRGCYC 1 cut(s) 600
BbrPI CACGTG 1 cut(s) 280
BbsI GAAGAC 2 cut(s) 971, 1541
BbvI GCAGC 4 cut(s) 50, 508, 536, 729
BccI CCATC 3 cut(s) 152, 1186, 1472
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 1096
BciVI GTATCC 1 cut(s) 1402
BclI TGATCA 1 cut(s) 1051
BcoDI GTCTC 1 cut(s) 1393
BcuI ACTAGT 2 cut(s) 628, 890
BfaI CTAG 6 cut(s) 624, 629, 891, 1359, 1479, 1594
BfmI CTRYAG 3 cut(s) 522, 804, 1423
BfoI RGCGCY 1 cut(s) 804
BfrI CTTAAG 1 cut(s) 1187
BfuI GTATCC 1 cut(s) 1402
BglI GCCNNNNNGGC 1 cut(s) 1099
BglII AGATCT 1 cut(s) 676
BisI GCNGC 5 cut(s) 39, 308, 522, 525, 743
BlsI GCNGC 5 cut(s) 40, 309, 523, 526, 744
Bme1390I CCNGG 1 cut(s) 1096
Bme18I GGWCC 2 cut(s) 530, 786
BmgBI CACGTC 1 cut(s) 832
BmgT120I GGNCC 6 cut(s) 530, 687, 786, 1092, 1100, 1443
BmiI GGNNCC 4 cut(s) 788, 1101, 1217, 1444
BmrFI CCNGG 1 cut(s) 1096
BmsI GCATC 2 cut(s) 610, 1197
BpiI GAAGAC 2 cut(s) 971, 1541
Bpu10I CCTNAGC 2 cut(s) 840, 1349
BpuEI CTTGAG 2 cut(s) 812, 861
BsaAI YACGTR 2 cut(s) 280, 367
BsaBI GATNNNNATC 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 1393
BsaJI CCNNGG 4 cut(s) 603, 1094, 1095, 1539
BsaWI WCCGGW 1 cut(s) 819
Bsc4I CCNNNNNNNGG 3 cut(s) 539, 989, 1226
Bse118I RCCGGY 1 cut(s) 819
Bse1I ACTGG 2 cut(s) 565, 749
Bse3DI GCAATG 2 cut(s) 876, 1217
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 1 cut(s) 1096
BseDI CCNNGG 4 cut(s) 603, 1094, 1095, 1539
BseGI GGATG 3 cut(s) 439, 1054, 1212
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 3 cut(s) 539, 989, 1226
BseMI GCAATG 2 cut(s) 876, 1217
BseMII CTCAG 1 cut(s) 1239
BseNI ACTGG 2 cut(s) 565, 749
BseXI GCAGC 4 cut(s) 50, 508, 536, 729
Bsh1236I CGCG 2 cut(s) 411, 431
BshFI GGCC 7 cut(s) 342, 689, 1093, 1102, 1334, 1412, 1445
BshTI ACCGGT 1 cut(s) 819
BsiSI CCGG 2 cut(s) 820, 1278
BslFI GGGAC 2 cut(s) 362, 954
BslI CCNNNNNNNGG 3 cut(s) 539, 989, 1226
BsmAI GTCTC 1 cut(s) 1393
BsmFI GGGAC 2 cut(s) 362, 954
BsnI GGCC 7 cut(s) 342, 689, 1093, 1102, 1334, 1412, 1445
Bso31I GGTCTC 1 cut(s) 1393
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 5 cut(s) 294, 676, 1051, 1429, 1546
BspACI CCGC 5 cut(s) 166, 307, 409, 431, 564
BspANI GGCC 7 cut(s) 342, 689, 1093, 1102, 1334, 1412, 1445
BspCNI CTCAG 1 cut(s) 1240
BspFNI CGCG 2 cut(s) 411, 431
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 4 cut(s) 788, 1101, 1217, 1444
BspMAI CTGCAG 1 cut(s) 526
BspPI GGATC 2 cut(s) 1437, 1541
BspTI CTTAAG 1 cut(s) 1187
BspTNI GGTCTC 1 cut(s) 1393
BsrDI GCAATG 2 cut(s) 876, 1217
BsrFI RCCGGY 1 cut(s) 819
BsrI ACTGG 2 cut(s) 565, 749
BssAI RCCGGY 1 cut(s) 819
BssECI CCNNGG 4 cut(s) 603, 1094, 1095, 1539
BssMI GATC 5 cut(s) 294, 676, 1051, 1429, 1546
Bst2UI CCWGG 1 cut(s) 1096
Bst4CI ACNGT 8 cut(s) 292, 500, 538, 604, 649, 769, 910, 1039
Bst6I CTCTTC 1 cut(s) 1309
BstAFI CTTAAG 1 cut(s) 1187
BstAPI GCANNNNNTGC 1 cut(s) 316
BstBAI YACGTR 2 cut(s) 280, 367
BstC8I GCNNGC 5 cut(s) 198, 285, 317, 709, 756
BstDEI CTNAG 3 cut(s) 840, 1248, 1349
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 439, 1054, 1212
BstFNI CGCG 2 cut(s) 411, 431
BstH2I RGCGCY 1 cut(s) 804
BstHHI GCGC 2 cut(s) 413, 803
BstKTI GATC 5 cut(s) 297, 679, 1054, 1432, 1549
BstMAI GTCTC 1 cut(s) 1393
BstMBI GATC 5 cut(s) 294, 676, 1051, 1429, 1546
BstMWI GCNNNNNNNGC 3 cut(s) 316, 751, 1099
BstNI CCWGG 1 cut(s) 1096
BstNSI RCATGY 3 cut(s) 377, 400, 1532
BstSCI CCNGG 1 cut(s) 1094
BstSFI CTRYAG 3 cut(s) 522, 804, 1423
BstUI CGCG 2 cut(s) 411, 431
BstV1I GCAGC 4 cut(s) 50, 508, 536, 729
BstV2I GAAGAC 2 cut(s) 971, 1541
BstX2I RGATCY 2 cut(s) 676, 1429
BstYI RGATCY 2 cut(s) 676, 1429
BsuI GTATCC 1 cut(s) 1402
BsuRI GGCC 7 cut(s) 342, 689, 1093, 1102, 1334, 1412, 1445
BtgI CCRYGG 1 cut(s) 603
BtrI CACGTC 1 cut(s) 832
BtsCI GGATG 3 cut(s) 439, 1054, 1212
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 5 cut(s) 198, 285, 317, 709, 756
CciI TCATGA 1 cut(s) 579
CfoI GCGC 2 cut(s) 413, 803
Cfr10I RCCGGY 1 cut(s) 819
Cfr13I GGNCC 6 cut(s) 530, 687, 786, 1092, 1100, 1443
Csp6I GTAC 3 cut(s) 645, 1345, 1526
CspAI ACCGGT 1 cut(s) 819
CviQI GTAC 3 cut(s) 645, 1345, 1526
DdeI CTNAG 3 cut(s) 840, 1248, 1349
DpnI GATC 5 cut(s) 296, 678, 1053, 1431, 1548
DpnII GATC 5 cut(s) 294, 676, 1051, 1429, 1546
Eam1104I CTCTTC 1 cut(s) 1309
EarI CTCTTC 1 cut(s) 1309
Eco147I AGGCCT 1 cut(s) 1412
Eco24I GRGCYC 1 cut(s) 600
Eco31I GGTCTC 1 cut(s) 1393
Eco47I GGWCC 2 cut(s) 530, 786
Eco57I CTGAAG 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 786
EcoRI GAATTC 1 cut(s) 1166
EcoRII CCWGG 1 cut(s) 1094
EcoT38I GRGCYC 1 cut(s) 600
FaqI GGGAC 2 cut(s) 362, 954
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 5 cut(s) 39, 308, 522, 525, 743
FokI GGATG 3 cut(s) 446, 1061, 1219
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 5 cut(s) 39, 308, 522, 525, 743
FspBI CTAG 6 cut(s) 624, 629, 891, 1359, 1479, 1594
GlaI GCGC 2 cut(s) 412, 802
GluI GCNGC 5 cut(s) 39, 308, 522, 525, 743
HaeII RGCGCY 1 cut(s) 804
HaeIII GGCC 7 cut(s) 342, 689, 1093, 1102, 1334, 1412, 1445
HapII CCGG 2 cut(s) 820, 1278
HhaI GCGC 2 cut(s) 413, 803
Hin6I GCGC 2 cut(s) 411, 801
HinP1I GCGC 2 cut(s) 411, 801
HindIII AAGCTT 1 cut(s) 709
HpaII CCGG 2 cut(s) 820, 1278
HphI GGTGA 3 cut(s) 482, 592, 1046
Hpy188III TCNNGA 8 cut(s) 95, 119, 392, 580, 653, 983, 1359, 1433
Hpy99I CGWCG 2 cut(s) 836, 1312
HpyAV CCTTC 7 cut(s) 125, 777, 1171, 1273, 1316, 1423, 1499
HpyCH4III ACNGT 8 cut(s) 292, 500, 538, 604, 649, 769, 910, 1039
HpyCH4IV ACGT 3 cut(s) 279, 366, 831
HpyCH4V TGCA 6 cut(s) 283, 302, 319, 524, 997, 1210
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 751, 1099
HpyF3I CTNAG 3 cut(s) 840, 1248, 1349
HpySE526I ACGT 3 cut(s) 279, 366, 831
HspAI GCGC 2 cut(s) 411, 801
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 5 cut(s) 294, 676, 1051, 1429, 1546
LmnI GCTCC 2 cut(s) 704, 1180
Lsp1109I GCAGC 4 cut(s) 50, 508, 536, 729
LweI GCATC 2 cut(s) 610, 1197
MaeI CTAG 6 cut(s) 624, 629, 891, 1359, 1479, 1594
MaeII ACGT 3 cut(s) 279, 366, 831
MaeIII GTNAC 5 cut(s) 256, 369, 551, 763, 899
MalI GATC 5 cut(s) 296, 678, 1053, 1431, 1548
MboI GATC 5 cut(s) 294, 676, 1051, 1429, 1546
MflI RGATCY 2 cut(s) 676, 1429
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 6 cut(s) 986, 1146, 1166, 1364, 1447, 1510
MlyI GAGTC 6 cut(s) 461, 726, 985, 1259, 1375, 1491
MmeI TCCRAC 3 cut(s) 159, 557, 1233
MroXI GAANNNNTTC 2 cut(s) 189, 1146
MseI TTAA 5 cut(s) 108, 224, 633, 1188, 1470
MslI CAYNNNNRTG 1 cut(s) 423
MspA1I CMGCKG 2 cut(s) 521, 527
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 2 cut(s) 820, 1278
MspR9I CCNGG 1 cut(s) 1096
MvaI CCWGG 1 cut(s) 1096
MvnI CGCG 2 cut(s) 411, 431
MwoI GCNNNNNNNGC 3 cut(s) 316, 751, 1099
NdeII GATC 5 cut(s) 294, 676, 1051, 1429, 1546
NlaIV GGNNCC 4 cut(s) 788, 1101, 1217, 1444
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 3 cut(s) 369, 551, 763
NspI RCATGY 3 cut(s) 377, 400, 1532
PagI TCATGA 1 cut(s) 579
PasI CCCWGGG 1 cut(s) 1095
PceI AGGCCT 1 cut(s) 1412
PciI ACATGT 3 cut(s) 373, 396, 1528
PdmI GAANNNNTTC 2 cut(s) 189, 1146
PfeI GAWTC 5 cut(s) 185, 272, 327, 1031, 1294
PinAI ACCGGT 1 cut(s) 819
PkrI GCNGC 5 cut(s) 40, 309, 523, 526, 744
PleI GAGTC 6 cut(s) 460, 725, 984, 1258, 1375, 1490
PmaCI CACGTG 1 cut(s) 280
PmlI CACGTG 1 cut(s) 280
PpsI GAGTC 6 cut(s) 460, 725, 984, 1258, 1375, 1490
Ppu21I YACGTR 2 cut(s) 280, 367
PpuMI RGGWCCY 1 cut(s) 786
PscI ACATGT 3 cut(s) 373, 396, 1528
Psp5II RGGWCCY 1 cut(s) 786
Psp6I CCWGG 1 cut(s) 1094
PspCI CACGTG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 1094
PspN4I GGNNCC 4 cut(s) 788, 1101, 1217, 1444
PspPI GGNCC 6 cut(s) 530, 687, 786, 1092, 1100, 1443
PspPPI RGGWCCY 1 cut(s) 786
PstI CTGCAG 1 cut(s) 526
PsuI RGATCY 2 cut(s) 676, 1429
PvuII CAGCTG 2 cut(s) 521, 527
RsaI GTAC 3 cut(s) 646, 1346, 1527
RsaNI GTAC 3 cut(s) 645, 1345, 1526
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 5 cut(s) 108, 224, 633, 1188, 1470
SatI GCNGC 5 cut(s) 39, 308, 522, 525, 743
Sau3AI GATC 5 cut(s) 294, 676, 1051, 1429, 1546
Sau96I GGNCC 6 cut(s) 530, 687, 786, 1092, 1100, 1443
SchI GAGTC 6 cut(s) 461, 726, 985, 1259, 1375, 1491
ScrFI CCNGG 1 cut(s) 1096
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 2 cut(s) 610, 1197
SfcI CTRYAG 3 cut(s) 522, 804, 1423
SfiI GGCCNNNNNGGCC 1 cut(s) 1099
SinI GGWCC 2 cut(s) 530, 786
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 3 cut(s) 791, 876, 1187
SmoI CTYRAG 3 cut(s) 791, 876, 1187
SpeI ACTAGT 2 cut(s) 628, 890
Sse9I AATT 6 cut(s) 986, 1146, 1166, 1364, 1447, 1510
SseBI AGGCCT 1 cut(s) 1412
SsiI CCGC 5 cut(s) 166, 307, 409, 431, 564
SspI AATATT 1 cut(s) 1474
SspMI CTAG 6 cut(s) 624, 629, 891, 1359, 1479, 1594
StuI AGGCCT 1 cut(s) 1412
StyD4I CCNGG 1 cut(s) 1094
TaaI ACNGT 8 cut(s) 292, 500, 538, 604, 649, 769, 910, 1039
TaiI ACGT 3 cut(s) 282, 369, 834
TaqI TCGA 2 cut(s) 96, 1086
TaqII GACCGA 1 cut(s) 1553
TasI AATT 6 cut(s) 986, 1146, 1166, 1364, 1447, 1510
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 5 cut(s) 185, 272, 327, 1031, 1294
Tru1I TTAA 5 cut(s) 108, 224, 633, 1188, 1470
Tru9I TTAA 5 cut(s) 108, 224, 633, 1188, 1470
TscAI CASTG 1 cut(s) 756
TseFI GTSAC 3 cut(s) 369, 551, 763
TseI GCWGC 4 cut(s) 38, 521, 524, 742
Tsp45I GTSAC 3 cut(s) 369, 551, 763
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 1 cut(s) 756
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 2 cut(s) 530, 786
XapI RAATTY 2 cut(s) 1166, 1364
XbaI TCTAGA 1 cut(s) 1358
XceI RCATGY 3 cut(s) 377, 400, 1532
XmnI GAANNNNTTC 2 cut(s) 189, 1146
XspI CTAG 6 cut(s) 624, 629, 891, 1359, 1479, 1594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.