Rmu_sc0003375.1_g000007

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003375.1
OG0000956
Physical Location & Seq
Forward (+)
22698 .. 24317
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003375.1_g000007.1.cds

Sequence Viewer

Length: 1620 bp
atgaagttaccaagttctgtagcagtagtactcttcattctctcaaccctttggttctcagaatcatgggcaactacttcaaatcccaatctcgaaaacttcctcaaatgccttccagaacaatctcactccaactactccatctctgaagccatttacacccgccaaaatgctacttttgaatccattctgctggcatacatcagaaacagcagatattacacccctacaactccgaaaccatgggttattgtaacagccaagcatgaatcccatgtgcaagcaactgtgatctgcgcaaagcgtcatggtttgcagattagaatccgaagtggcggccatgattacgagggtctatcgtacgtgtcctatgtcccctttgttattcttgacatgttaaacctctgcgccattcatattgatgtcgcggatgagagtgcttgggttgagtctggggctattgtaggtgaactttactctgaaattgcaaagaaaagtaaagttcatggctttccagctgcaactggtccaactgttggtgttggtggtcattttagtggtgcagggtatggtgtcatgctgagaaaatatgggctcacagtggataacattgaagatgctaaactagttaatgtgaatggtacaattcttgacagagagtctatgggagaagatcttttttgggccattagaggaggtggtggagcaagctttggagtcattttgtcatggaaaataaagctacttccagtgtcagccaaggtgactgtattcaacatcggaaggacccttgagcaaggcgctacagatgttctttaccggtggcaacatgtggcgcctaatctacctaaagaagtcttcatcagagcaatgcctctagtgttgagtactagtttgcgtaacaagactttggaagtgtcattcattggtttcttcttgggacaaagtgatgagcttctttcactgataaatgggagtcttcctgaattgggtttgcagaaaacagattgctttgaaatgagttgggtagaatctacggtattttgggatgatcacccacttggaacttccatagatgttctactcgaaaggcccagggggccagaccacagcatgaaaggtaagtctgactatgtgaaagaaccaattccaaaacaagacatagaatacatattgaaggagctacttaagatggagagcggttggatgcaatggagcccttacggtggaagaatgagtgagatttccgagtgggcaactcccttccctcaccgagccggaaacctgttcatgattcaatattcttggtcgtgggaagaagaagggattgaggccacaaacaagtaccttagcttatctagaaattttcacaaaataatgactccatttgtgtccaagcgaccaagagaggccttccaaaactatagagatcttgacattggggccaatttggataatcagaccatctttaacattgctagagtctatggaagcaaatactttgaaggtaattttgaaaggctggtacgtgtgaagaccgaggttgatccccaaaactttttcaagcatgaacaaagtatcccacctcttcctcagtattatttggtccaatggtattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

539

Amino Acids

61.06

Weight (kDa)

6.19

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 835
AccB7I CCANNNNNTGG 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 1200
AccII CGCG 1 cut(s) 428
AciI CCGC 4 cut(s) 163, 336, 428, 1200
AclWI GGATC 1 cut(s) 1541
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 1363
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 836
AfaI GTAC 6 cut(s) 30, 362, 643, 889, 1346, 1527
AfiI CCNNNNNNNGG 3 cut(s) 536, 989, 1226
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 4 cut(s) 363, 393, 829, 1528
AgeI ACCGGT 1 cut(s) 819
AhdI GACNNNNNGTC 1 cut(s) 658
AhlI ACTAGT 2 cut(s) 625, 890
AjnI CCWGG 1 cut(s) 1094
AloI GAACNNNNNNTCC 2 cut(s) 1563, 1595
AluBI AGCT 6 cut(s) 518, 711, 742, 955, 1183, 1353
AluI AGCT 6 cut(s) 518, 711, 742, 955, 1183, 1353
AlwI GGATC 1 cut(s) 1541
AoxI GGCC 7 cut(s) 337, 684, 1091, 1100, 1332, 1410, 1443
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 1 cut(s) 1363
AsiGI ACCGGT 1 cut(s) 819
Asp700I GAANNNNTTC 2 cut(s) 186, 1146
AspLEI GCGC 4 cut(s) 299, 410, 803, 838
AspS9I GGNCC 7 cut(s) 527, 684, 786, 1092, 1100, 1443, 1606
AsuHPI GGTGA 4 cut(s) 479, 775, 1046, 1262
AvaII GGWCC 3 cut(s) 527, 786, 1606
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 2 cut(s) 597, 1220
BbsI GAAGAC 3 cut(s) 850, 971, 1541
BbvI GCAGC 1 cut(s) 505
BccI CCATC 3 cut(s) 149, 1186, 1472
BciT130I CCWGG 1 cut(s) 1096
BciVI GTATCC 1 cut(s) 1589
BclI TGATCA 1 cut(s) 1051
BcuI ACTAGT 2 cut(s) 625, 890
BfaI CTAG 5 cut(s) 626, 878, 891, 1359, 1479
BfmI CTRYAG 3 cut(s) 18, 804, 1423
BfoI RGCGCY 2 cut(s) 804, 839
BfrI CTTAAG 1 cut(s) 1187
BfuI GTATCC 1 cut(s) 1589
BglI GCCNNNNNGGC 1 cut(s) 1099
BglII AGATCT 2 cut(s) 673, 1429
BisI GCNGC 2 cut(s) 337, 519
BlsI GCNGC 2 cut(s) 338, 520
BmcAI AGTACT 2 cut(s) 30, 889
Bme1390I CCNGG 1 cut(s) 1096
Bme18I GGWCC 3 cut(s) 527, 786, 1606
BmeRI GACNNNNNGTC 1 cut(s) 658
BmgT120I GGNCC 7 cut(s) 527, 684, 786, 1092, 1100, 1443, 1606
BmiI GGNNCC 5 cut(s) 788, 837, 1101, 1217, 1444
BmrFI CCNGG 1 cut(s) 1096
BmsI GCATC 2 cut(s) 607, 1197
BpiI GAAGAC 3 cut(s) 850, 971, 1541
Bpu10I CCTNAGC 1 cut(s) 1349
BpuEI CTTGAG 1 cut(s) 812
BsaAI YACGTR 2 cut(s) 364, 1529
BsaBI GATNNNNATC 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 836
BsaJI CCNNGG 5 cut(s) 242, 759, 1094, 1095, 1539
BsaWI WCCGGW 1 cut(s) 819
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 989, 1226
Bse118I RCCGGY 1 cut(s) 819
Bse1I ACTGG 2 cut(s) 529, 749
Bse3DI GCAATG 3 cut(s) 876, 1217, 1473
Bse8I GATNNNNATC 1 cut(s) 323
BseBI CCWGG 1 cut(s) 1096
BseDI CCNNGG 5 cut(s) 242, 759, 1094, 1095, 1539
BseGI GGATG 3 cut(s) 436, 1054, 1212
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 3 cut(s) 536, 989, 1226
BseMI GCAATG 3 cut(s) 876, 1217, 1473
BseMII CTCAG 3 cut(s) 72, 572, 1607
BseNI ACTGG 2 cut(s) 529, 749
BseRI GAGGAG 1 cut(s) 708
BseXI GCAGC 1 cut(s) 505
BsgI GTGCAG 1 cut(s) 582
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 7 cut(s) 339, 686, 1093, 1102, 1334, 1412, 1445
BshNI GGYRCC 1 cut(s) 835
BshTI ACCGGT 1 cut(s) 819
BsiSI CCGG 2 cut(s) 820, 1278
BsiWI CGTACG 1 cut(s) 360
BslFI GGGAC 2 cut(s) 359, 954
BslI CCNNNNNNNGG 3 cut(s) 536, 989, 1226
BsmFI GGGAC 2 cut(s) 359, 954
BsnI GGCC 7 cut(s) 339, 686, 1093, 1102, 1334, 1412, 1445
Bsp1286I GDGCHC 2 cut(s) 597, 1220
Bsp143I GATC 5 cut(s) 291, 673, 1051, 1429, 1546
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 4 cut(s) 163, 336, 428, 1200
BspANI GGCC 7 cut(s) 339, 686, 1093, 1102, 1334, 1412, 1445
BspCNI CTCAG 3 cut(s) 71, 573, 1606
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 1 cut(s) 1290
BspLI GGNNCC 5 cut(s) 788, 837, 1101, 1217, 1444
BspPI GGATC 1 cut(s) 1541
BspT107I GGYRCC 1 cut(s) 835
BspTI CTTAAG 1 cut(s) 1187
BsrBI CCGCTC 1 cut(s) 1200
BsrDI GCAATG 3 cut(s) 876, 1217, 1473
BsrFI RCCGGY 1 cut(s) 819
BsrI ACTGG 2 cut(s) 529, 749
BssAI RCCGGY 1 cut(s) 819
BssECI CCNNGG 5 cut(s) 242, 759, 1094, 1095, 1539
BssMI GATC 5 cut(s) 291, 673, 1051, 1429, 1546
BssNI GRCGYC 1 cut(s) 836
BssT1I CCWWGG 2 cut(s) 242, 759
Bst2UI CCWGG 1 cut(s) 1096
Bst4CI ACNGT 6 cut(s) 289, 535, 601, 769, 1039, 1226
Bst6I CTCTTC 2 cut(s) 38, 1593
BstACI GRCGYC 1 cut(s) 836
BstAFI CTTAAG 1 cut(s) 1187
BstBAI YACGTR 2 cut(s) 364, 1529
BstC8I GCNNGC 3 cut(s) 195, 282, 709
BstDEI CTNAG 4 cut(s) 58, 581, 1349, 1593
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 436, 1054, 1212
BstFNI CGCG 1 cut(s) 428
BstH2I RGCGCY 2 cut(s) 804, 839
BstHHI GCGC 4 cut(s) 299, 410, 803, 838
BstKTI GATC 5 cut(s) 294, 676, 1054, 1432, 1549
BstMBI GATC 5 cut(s) 291, 673, 1051, 1429, 1546
BstMWI GCNNNNNNNGC 1 cut(s) 1099
BstNI CCWGG 1 cut(s) 1096
BstNSI RCATGY 2 cut(s) 397, 833
BstSCI CCNGG 1 cut(s) 1094
BstSFI CTRYAG 3 cut(s) 18, 804, 1423
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 1 cut(s) 505
BstV2I GAAGAC 3 cut(s) 850, 971, 1541
BstX2I RGATCY 2 cut(s) 673, 1429
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 2 cut(s) 673, 1429
BsuI GTATCC 1 cut(s) 1589
BsuRI GGCC 7 cut(s) 339, 686, 1093, 1102, 1334, 1412, 1445
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 3 cut(s) 436, 1054, 1212
BtsIMutI CAGTG 3 cut(s) 606, 756, 962
Cac8I GCNNGC 3 cut(s) 195, 282, 709
CciI TCATGA 1 cut(s) 1290
CfoI GCGC 4 cut(s) 299, 410, 803, 838
Cfr10I RCCGGY 1 cut(s) 819
Cfr13I GGNCC 7 cut(s) 527, 684, 786, 1092, 1100, 1443, 1606
CseI GACGC 1 cut(s) 293
Csp6I GTAC 6 cut(s) 29, 361, 642, 888, 1345, 1526
CspAI ACCGGT 1 cut(s) 819
CviQI GTAC 6 cut(s) 29, 361, 642, 888, 1345, 1526
DdeI CTNAG 4 cut(s) 58, 581, 1349, 1593
DinI GGCGCC 1 cut(s) 837
DpnI GATC 5 cut(s) 293, 675, 1053, 1431, 1548
DpnII GATC 5 cut(s) 291, 673, 1051, 1429, 1546
DriI GACNNNNNGTC 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 38, 1593
Eam1105I GACNNNNNGTC 1 cut(s) 658
EarI CTCTTC 2 cut(s) 38, 1593
Eco130I CCWWGG 2 cut(s) 242, 759
Eco147I AGGCCT 1 cut(s) 1412
Eco24I GRGCYC 2 cut(s) 597, 1220
Eco47I GGWCC 3 cut(s) 527, 786, 1606
Eco57I CTGAAG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 786
EcoRII CCWGG 1 cut(s) 1094
EcoT14I CCWWGG 2 cut(s) 242, 759
EcoT38I GRGCYC 2 cut(s) 597, 1220
EgeI GGCGCC 1 cut(s) 837
EheI GGCGCC 1 cut(s) 837
ErhI CCWWGG 2 cut(s) 242, 759
FaqI GGGAC 2 cut(s) 359, 954
FauI CCCGC 1 cut(s) 170
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 2 cut(s) 337, 519
FokI GGATG 3 cut(s) 443, 1061, 1219
FriOI GRGCYC 2 cut(s) 597, 1220
Fsp4HI GCNGC 2 cut(s) 337, 519
FspBI CTAG 5 cut(s) 626, 878, 891, 1359, 1479
FspI TGCGCA 1 cut(s) 298
GlaI GCGC 4 cut(s) 298, 409, 802, 837
GluI GCNGC 2 cut(s) 337, 519
HaeII RGCGCY 2 cut(s) 804, 839
HaeIII GGCC 7 cut(s) 339, 686, 1093, 1102, 1334, 1412, 1445
HapII CCGG 2 cut(s) 820, 1278
HgaI GACGC 1 cut(s) 293
HhaI GCGC 4 cut(s) 299, 410, 803, 838
Hin1I GRCGYC 1 cut(s) 836
Hin6I GCGC 4 cut(s) 297, 408, 801, 836
HinP1I GCGC 4 cut(s) 297, 408, 801, 836
HindIII AAGCTT 1 cut(s) 709
HpaII CCGG 2 cut(s) 820, 1278
HphI GGTGA 4 cut(s) 479, 775, 1046, 1262
Hpy166II GTNNAC 1 cut(s) 470
Hpy188III TCNNGA 8 cut(s) 92, 116, 389, 650, 983, 1291, 1359, 1433
Hpy8I GTNNAC 1 cut(s) 470
HpyAV CCTTC 7 cut(s) 122, 777, 1171, 1273, 1316, 1423, 1499
HpyCH4III ACNGT 6 cut(s) 289, 535, 601, 769, 1039, 1226
HpyCH4IV ACGT 2 cut(s) 363, 1528
HpyCH4V TGCA 7 cut(s) 280, 316, 488, 521, 563, 997, 1210
HpyF10VI GCNNNNNNNGC 1 cut(s) 1099
HpyF3I CTNAG 4 cut(s) 58, 581, 1349, 1593
HpySE526I ACGT 2 cut(s) 363, 1528
Hsp92I GRCGYC 1 cut(s) 836
HspAI GCGC 4 cut(s) 297, 408, 801, 836
KasI GGCGCC 1 cut(s) 835
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 5 cut(s) 291, 673, 1051, 1429, 1546
LmnI GCTCC 3 cut(s) 704, 1180, 1215
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 2 cut(s) 607, 1197
MaeI CTAG 5 cut(s) 626, 878, 891, 1359, 1479
MaeII ACGT 2 cut(s) 363, 1528
MaeIII GTNAC 4 cut(s) 6, 253, 763, 899
MalI GATC 5 cut(s) 293, 675, 1053, 1431, 1548
MbiI CCGCTC 1 cut(s) 1200
MboI GATC 5 cut(s) 291, 673, 1051, 1429, 1546
MflI RGATCY 2 cut(s) 673, 1429
MhlI GDGCHC 2 cut(s) 597, 1220
MluCI AATT 7 cut(s) 483, 645, 986, 1146, 1363, 1447, 1510
Mly113I GGCGCC 1 cut(s) 836
MlyI GAGTC 6 cut(s) 458, 668, 726, 985, 1375, 1491
MmeI TCCRAC 3 cut(s) 156, 554, 1184
MroXI GAANNNNTTC 2 cut(s) 186, 1146
MseI TTAA 5 cut(s) 398, 630, 1188, 1470, 1618
MslI CAYNNNNRTG 2 cut(s) 420, 555
MspA1I CMGCKG 1 cut(s) 518
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 2 cut(s) 820, 1278
MspR9I CCNGG 1 cut(s) 1096
MvaI CCWGG 1 cut(s) 1096
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 1099
NarI GGCGCC 1 cut(s) 836
NcoI CCATGG 1 cut(s) 242
NdeII GATC 5 cut(s) 291, 673, 1051, 1429, 1546
NlaIV GGNNCC 5 cut(s) 788, 837, 1101, 1217, 1444
NmuCI GTSAC 1 cut(s) 763
NsbI TGCGCA 1 cut(s) 298
NspI RCATGY 2 cut(s) 397, 833
PagI TCATGA 1 cut(s) 1290
PasI CCCWGGG 1 cut(s) 1095
PceI AGGCCT 1 cut(s) 1412
PciI ACATGT 2 cut(s) 393, 829
PdmI GAANNNNTTC 2 cut(s) 186, 1146
PfeI GAWTC 6 cut(s) 62, 182, 269, 324, 1031, 1294
Pfl23II CGTACG 1 cut(s) 360
PflMI CCANNNNNTGG 1 cut(s) 536
PinAI ACCGGT 1 cut(s) 819
PkrI GCNGC 2 cut(s) 338, 520
PleI GAGTC 6 cut(s) 457, 667, 725, 984, 1375, 1490
PluTI GGCGCC 1 cut(s) 839
PpsI GAGTC 6 cut(s) 457, 667, 725, 984, 1375, 1490
Ppu21I YACGTR 2 cut(s) 364, 1529
PpuMI RGGWCCY 1 cut(s) 786
PscI ACATGT 2 cut(s) 393, 829
Psp5II RGGWCCY 1 cut(s) 786
Psp6I CCWGG 1 cut(s) 1094
PspGI CCWGG 1 cut(s) 1094
PspLI CGTACG 1 cut(s) 360
PspN4I GGNNCC 5 cut(s) 788, 837, 1101, 1217, 1444
PspPI GGNCC 7 cut(s) 527, 684, 786, 1092, 1100, 1443, 1606
PspPPI RGGWCCY 1 cut(s) 786
PsuI RGATCY 2 cut(s) 673, 1429
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 6 cut(s) 30, 362, 643, 889, 1346, 1527
RsaNI GTAC 6 cut(s) 29, 361, 642, 888, 1345, 1526
RseI CAYNNNNRTG 2 cut(s) 420, 555
SaqAI TTAA 5 cut(s) 398, 630, 1188, 1470, 1618
SatI GCNGC 2 cut(s) 337, 519
Sau3AI GATC 5 cut(s) 291, 673, 1051, 1429, 1546
Sau96I GGNCC 7 cut(s) 527, 684, 786, 1092, 1100, 1443, 1606
ScaI AGTACT 2 cut(s) 30, 889
SchI GAGTC 6 cut(s) 458, 668, 726, 985, 1375, 1491
ScrFI CCNGG 1 cut(s) 1096
SduI GDGCHC 2 cut(s) 597, 1220
SfaNI GCATC 2 cut(s) 607, 1197
SfcI CTRYAG 3 cut(s) 18, 804, 1423
SfiI GGCCNNNNNGGCC 1 cut(s) 1099
SfoI GGCGCC 1 cut(s) 837
SinI GGWCC 3 cut(s) 527, 786, 1606
SmiMI CAYNNNNRTG 2 cut(s) 420, 555
SmlI CTYRAG 2 cut(s) 791, 1187
SmoI CTYRAG 2 cut(s) 791, 1187
SpeI ACTAGT 2 cut(s) 625, 890
Sse9I AATT 7 cut(s) 483, 645, 986, 1146, 1363, 1447, 1510
SseBI AGGCCT 1 cut(s) 1412
SsiI CCGC 4 cut(s) 163, 336, 428, 1200
SspDI GGCGCC 1 cut(s) 835
SspI AATATT 1 cut(s) 1301
SspMI CTAG 5 cut(s) 626, 878, 891, 1359, 1479
StuI AGGCCT 1 cut(s) 1412
StyD4I CCNGG 1 cut(s) 1094
StyI CCWWGG 2 cut(s) 242, 759
TaaI ACNGT 6 cut(s) 289, 535, 601, 769, 1039, 1226
TaiI ACGT 2 cut(s) 366, 1531
TaqI TCGA 2 cut(s) 93, 1086
TaqII GACCGA 1 cut(s) 1553
TasI AATT 7 cut(s) 483, 645, 986, 1146, 1363, 1447, 1510
TatI WGTACW 2 cut(s) 28, 887
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 6 cut(s) 62, 182, 269, 324, 1031, 1294
Tru1I TTAA 5 cut(s) 398, 630, 1188, 1470, 1618
Tru9I TTAA 5 cut(s) 398, 630, 1188, 1470, 1618
TscAI CASTG 3 cut(s) 606, 756, 969
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 1 cut(s) 763
TspRI CASTG 3 cut(s) 606, 756, 969
Van91I CCANNNNNTGG 1 cut(s) 536
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 3 cut(s) 527, 786, 1606
XapI RAATTY 1 cut(s) 1363
XbaI TCTAGA 1 cut(s) 1358
XceI RCATGY 2 cut(s) 397, 833
XmnI GAANNNNTTC 2 cut(s) 186, 1146
XspI CTAG 5 cut(s) 626, 878, 891, 1359, 1479
ZrmI AGTACT 2 cut(s) 30, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.