Prupe.4G099100_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000956
Physical Location & Seq
Reverse (-)
5039553 .. 5041825
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G099100.1

Sequence Viewer

Length: 1596 bp
ATGATAGATACTCTCGATCCACCAATAAAGACGATACCAACATCATGGACAAGTGCTTTCAATGACTCCCTCAAATTTCTTCCCAAAAAATCTCAACAAGTTATCAATGACTTCATTCAATGCCTTGGAGAAACATCTCAGTCCAACCCTCCAATTTACACCCCTCAAAACACCTCATTTCCCCATGTGTTGTTATCACTCATTAAAAACCGCAGATACTTTACACCTACAACTCCAAAACCTTTGGCTATTGTAGCACCCACGCATGAATCCCATGTCCAAGCAACCGTCATTTGCACAAAACGACACGGGTTGCAAATTAGAATCCGAAGTGGTGGCCATGATTATGAGGGCTTATCATACGTATCGAATCTTCCCTTTGTTGTTCTTGACATGTTCAATCTTCGATCCGTTGATATGAATCTTGAAGATGAGAGTGCTTGGGTTCAAGCTGGGGCTACTATTGGTGAACTTTACTATGCAATTGGACAGAAAAGTAAGGTTCATGGGTTTGCAGCTGGATCTTGTCCAAGTGTTGGTATTGGTGGCCACTTTAGTGGTGGTGGGTATGGTCCACTTATGAGAAAATATGGTCTTACAGTGGATAACGTTGAAGATGCTAAACTAGTGAATGTGAATGGTAGAATCCTTGATAGAAATACAATGGGAGAAGATCTTTTTTGGGCCATTAGAGGTGGTGGTGGAGCCAGCTTTGGAGTCATTCTTTCATGGAAGATCAAGTTGATTCGAGTTCCACCTAAAGTGACCATGTTCAATGTGAGAAGGACCTTGGAAGAAGGCGGTACCGATGTGCTCCATCGATGGCAATACGTTGCACCTAAGCTCCCTGAAGACATCTTCATTAGAGTAGGTATACAAGTCAAGAATAGTAGCCAAGAGGGGAAGAAGACAGTGCAAGTATTATTCACTGGTCAGTTTTTGGGACAAAGTGACAAGCTTGTTCCATTGGTAAATAAGCGTTTCCCTGAATTGGGTTTACAACAAAAAGATTGCTTTGAAATGAGTTGGATAGAATCCACTGTGTTCATGGCTGCTTGCCCAATTGGAACTCCAATAGATGTTCTACTTTCTAGGCCAAAGGCGCCAGCAATCTTCTTCAAGAGCAAGTCTGACTACGTGAAAGAACCAATTCCAAAACATGGTTTCAAATCCATATGGAAGAAGCTGATTAAGATAGAGAAGGTGTGGATGCAATTGAACCCCTACGGTGGAAGGATGAGTGAGATTTCTGAATCAGCAACTCCATTCCCTCATAGAGCTGGAAACCTATATTCGGTTCAGTACTTTATATCTTGGATGGAAGAAGGGATTAAGACCACCAATCACTATATTAAATTGTCGAGAAAATTGTATACAAGTATGGCTCCTTTTGTCTCCAAGAACCCAAGAGAGGCCTTGCAAAACTATAGGGACCTAGACATTGGTACCAACCTGCGCAACCACACAAACTTTCACAAGGCTAGACTTTATGGAAGGAAGTATTTTAAATATAACTTTGATAGATTGGTACAAGTAAAAACAATGGTTGATCCTCAGGATTTTTTCAAGCATGAACAAAGTATTCCACCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

532

Amino Acids

60.07

Weight (kDa)

9.53

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1457
Acc36I ACCTGC 1 cut(s) 1461
Acc65I GGTACC 2 cut(s) 803, 1445
AccB1I GGYRCC 3 cut(s) 803, 1102, 1445
AccB7I CCANNNNNTGG 2 cut(s) 536, 1160
AccI GTMKAC 2 cut(s) 874, 1373
AciI CCGC 2 cut(s) 211, 801
AclI AACGTT 1 cut(s) 609
AclWI GGATC 4 cut(s) 11, 402, 529, 1544
AcoI YGGCCR 2 cut(s) 337, 547
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 870
AcyI GRCGYC 1 cut(s) 1103
AfaI GTAC 4 cut(s) 805, 1304, 1447, 1530
AfiI CCNNNNNNNGG 7 cut(s) 536, 991, 992, 1160, 1229, 1294, 1411
AflIII ACRYGT 1 cut(s) 393
AhlI ACTAGT 1 cut(s) 625
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 7 cut(s) 452, 518, 711, 844, 958, 1186, 1280
AluI AGCT 7 cut(s) 452, 518, 711, 844, 958, 1186, 1280
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 1 cut(s) 1399
AlwI GGATC 4 cut(s) 11, 402, 529, 1544
AoxI GGCC 5 cut(s) 337, 547, 684, 1094, 1413
ApeKI GCWGC 2 cut(s) 515, 1052
ApoI RAATTY 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 1149
Asp718I GGTACC 2 cut(s) 803, 1445
AspLEI GCGC 2 cut(s) 1105, 1458
AspS9I GGNCC 4 cut(s) 572, 684, 786, 1432
AsuHPI GGTGA 1 cut(s) 479
AvaII GGWCC 3 cut(s) 572, 786, 1432
AxyI CCTNAGG 1 cut(s) 1554
BaeI ACNNNNGTAYC 4 cut(s) 795, 828, 1429, 1462
BalI TGGCCA 2 cut(s) 339, 549
BanI GGYRCC 3 cut(s) 803, 1102, 1445
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BbsI GAAGAC 2 cut(s) 858, 914
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 527, 1039
BccI CCATC 3 cut(s) 816, 825, 1312
BcoDI GTCTC 1 cut(s) 1399
BcuI ACTAGT 1 cut(s) 625
BfaI CTAG 4 cut(s) 626, 1092, 1436, 1482
BfmI CTRYAG 1 cut(s) 1426
BfoI RGCGCY 1 cut(s) 1106
BfuAI ACCTGC 1 cut(s) 1461
BglII AGATCT 1 cut(s) 673
BisI GCNGC 2 cut(s) 516, 1053
BlsI GCNGC 2 cut(s) 517, 1054
BmcAI AGTACT 1 cut(s) 1304
Bme18I GGWCC 3 cut(s) 572, 786, 1432
BmgT120I GGNCC 4 cut(s) 572, 684, 786, 1432
BmiI GGNNCC 6 cut(s) 706, 805, 1104, 1386, 1433, 1447
BmsI GCATC 2 cut(s) 607, 1200
BpiI GAAGAC 2 cut(s) 858, 914
Bpu10I CCTNAGC 1 cut(s) 840
Bsa29I ATCGAT 1 cut(s) 820
BsaAI YACGTR 2 cut(s) 364, 1138
BsaBI GATNNNNATC 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 1103
BsaJI CCNNGG 2 cut(s) 124, 789
BsaXI ACNNNNNCTCC 2 cut(s) 828, 858
Bsc4I CCNNNNNNNGG 7 cut(s) 536, 991, 992, 1160, 1229, 1294, 1411
Bse1I ACTGG 1 cut(s) 934
Bse21I CCTNAGG 1 cut(s) 1554
Bse8I GATNNNNATC 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 820
BseDI CCNNGG 2 cut(s) 124, 789
BseGI GGATG 3 cut(s) 1215, 1242, 1323
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 7 cut(s) 536, 991, 992, 1160, 1229, 1294, 1411
BseMII CTCAG 2 cut(s) 152, 1568
BseNI ACTGG 1 cut(s) 934
BseXI GCAGC 2 cut(s) 527, 1039
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 5 cut(s) 339, 549, 686, 1096, 1415
BshNI GGYRCC 3 cut(s) 803, 1102, 1445
BshVI ATCGAT 1 cut(s) 820
BsiHKAI GWGCWC 1 cut(s) 816
BslFI GGGAC 2 cut(s) 957, 1445
BslI CCNNNNNNNGG 7 cut(s) 536, 991, 992, 1160, 1229, 1294, 1411
BsmAI GTCTC 1 cut(s) 1399
BsmFI GGGAC 2 cut(s) 957, 1445
BsnI GGCC 5 cut(s) 339, 549, 686, 1096, 1415
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 6 cut(s) 16, 407, 521, 673, 735, 1549
BspACI CCGC 2 cut(s) 211, 801
BspANI GGCC 5 cut(s) 339, 549, 686, 1096, 1415
BspCNI CTCAG 2 cut(s) 151, 1567
BspDI ATCGAT 1 cut(s) 820
BspLI GGNNCC 6 cut(s) 706, 805, 1104, 1386, 1433, 1447
BspMI ACCTGC 1 cut(s) 1461
BspPI GGATC 4 cut(s) 11, 402, 529, 1544
BspT107I GGYRCC 3 cut(s) 803, 1102, 1445
BsrI ACTGG 1 cut(s) 934
BssECI CCNNGG 2 cut(s) 124, 789
BssMI GATC 6 cut(s) 16, 407, 521, 673, 735, 1549
BssNAI GTATAC 2 cut(s) 875, 1374
BssNI GRCGYC 1 cut(s) 1103
BssT1I CCWWGG 2 cut(s) 124, 789
Bst1107I GTATAC 2 cut(s) 875, 1374
Bst4CI ACNGT 5 cut(s) 289, 601, 913, 1042, 1229
BstACI GRCGYC 1 cut(s) 1103
BstBAI YACGTR 2 cut(s) 364, 1138
BstC8I GCNNGC 3 cut(s) 709, 1057, 1107
BstDEI CTNAG 3 cut(s) 138, 840, 1554
BstF5I GGATG 3 cut(s) 1215, 1242, 1323
BstH2I RGCGCY 1 cut(s) 1106
BstHHI GCGC 2 cut(s) 1105, 1458
BstKTI GATC 6 cut(s) 19, 410, 524, 676, 738, 1552
BstMAI GTCTC 1 cut(s) 1399
BstMBI GATC 6 cut(s) 16, 407, 521, 673, 735, 1549
BstMWI GCNNNNNNNGC 2 cut(s) 254, 1102
BstNSI RCATGY 1 cut(s) 397
BstSFI CTRYAG 1 cut(s) 1426
BstSNI TACGTA 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 527, 1039
BstV2I GAAGAC 2 cut(s) 858, 914
BstX2I RGATCY 2 cut(s) 521, 673
BstXI CCANNNNNNTGG 2 cut(s) 45, 557
BstYI RGATCY 2 cut(s) 521, 673
BstZ17I GTATAC 2 cut(s) 875, 1374
Bsu15I ATCGAT 1 cut(s) 820
Bsu36I CCTNAGG 1 cut(s) 1554
BsuRI GGCC 5 cut(s) 339, 549, 686, 1096, 1415
BsuTUI ATCGAT 1 cut(s) 820
BtsCI GGATG 3 cut(s) 1215, 1242, 1323
BtsIMutI CAGTG 4 cut(s) 606, 918, 927, 1038
BveI ACCTGC 1 cut(s) 1461
Cac8I GCNNGC 3 cut(s) 709, 1057, 1107
CfoI GCGC 2 cut(s) 1105, 1458
Cfr13I GGNCC 4 cut(s) 572, 684, 786, 1432
ClaI ATCGAT 1 cut(s) 820
Csp6I GTAC 4 cut(s) 804, 1303, 1446, 1529
CviQI GTAC 4 cut(s) 804, 1303, 1446, 1529
DdeI CTNAG 3 cut(s) 138, 840, 1554
DinI GGCGCC 1 cut(s) 1104
DpnI GATC 6 cut(s) 18, 409, 523, 675, 737, 1551
DpnII GATC 6 cut(s) 16, 407, 521, 673, 735, 1549
DraI TTTAAA 1 cut(s) 1507
EaeI YGGCCR 2 cut(s) 337, 547
Eco105I TACGTA 1 cut(s) 364
Eco130I CCWWGG 2 cut(s) 124, 789
Eco147I AGGCCT 1 cut(s) 1415
Eco47I GGWCC 3 cut(s) 572, 786, 1432
Eco57I CTGAAG 1 cut(s) 870
Eco81I CCTNAGG 1 cut(s) 1554
EcoO109I RGGNCCY 2 cut(s) 786, 1432
EcoT14I CCWWGG 2 cut(s) 124, 789
EgeI GGCGCC 1 cut(s) 1104
EheI GGCGCC 1 cut(s) 1104
ErhI CCWWGG 2 cut(s) 124, 789
FaqI GGGAC 2 cut(s) 957, 1445
FauNDI CATATG 1 cut(s) 1175
FblI GTMKAC 2 cut(s) 874, 1373
Fnu4HI GCNGC 2 cut(s) 516, 1053
FokI GGATG 3 cut(s) 1222, 1249, 1330
Fsp4HI GCNGC 2 cut(s) 516, 1053
FspBI CTAG 4 cut(s) 626, 1092, 1436, 1482
FspI TGCGCA 1 cut(s) 1457
GlaI GCGC 2 cut(s) 1104, 1457
GluI GCNGC 2 cut(s) 516, 1053
GsaI CCCAGC 1 cut(s) 456
HaeII RGCGCY 1 cut(s) 1106
HaeIII GGCC 5 cut(s) 339, 549, 686, 1096, 1415
HhaI GCGC 2 cut(s) 1105, 1458
Hin1I GRCGYC 1 cut(s) 1103
Hin6I GCGC 2 cut(s) 1103, 1456
HinP1I GCGC 2 cut(s) 1103, 1456
HindIII AAGCTT 1 cut(s) 956
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 5 cut(s) 470, 575, 875, 998, 1374
Hpy188I TCNGA 3 cut(s) 329, 1132, 1252
Hpy188III TCNNGA 7 cut(s) 14, 389, 425, 883, 1120, 1362, 1556
Hpy8I GTNNAC 5 cut(s) 470, 575, 875, 998, 1374
HpyAV CCTTC 6 cut(s) 777, 791, 1195, 1227, 1319, 1488
HpyCH4III ACNGT 5 cut(s) 289, 601, 913, 1042, 1229
HpyCH4IV ACGT 4 cut(s) 363, 609, 831, 1137
HpyCH4V TGCA 8 cut(s) 297, 316, 482, 515, 836, 916, 1213, 1420
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 1102
HpyF3I CTNAG 3 cut(s) 138, 840, 1554
HpySE526I ACGT 4 cut(s) 363, 609, 831, 1137
Hsp92I GRCGYC 1 cut(s) 1103
HspAI GCGC 2 cut(s) 1103, 1456
KasI GGCGCC 1 cut(s) 1102
KpnI GGTACC 2 cut(s) 807, 1449
Kzo9I GATC 6 cut(s) 16, 407, 521, 673, 735, 1549
LmnI GCTCC 4 cut(s) 704, 819, 849, 1390
Lsp1109I GCAGC 2 cut(s) 527, 1039
LweI GCATC 2 cut(s) 607, 1200
MaeI CTAG 4 cut(s) 626, 1092, 1436, 1482
MaeII ACGT 4 cut(s) 363, 609, 831, 1137
MaeIII GTNAC 2 cut(s) 763, 950
MalI GATC 6 cut(s) 18, 409, 523, 675, 737, 1551
MboI GATC 6 cut(s) 16, 407, 521, 673, 735, 1549
MfeI CAATTG 3 cut(s) 483, 1062, 1214
MflI RGATCY 2 cut(s) 521, 673
MhlI GDGCHC 1 cut(s) 816
MlsI TGGCCA 2 cut(s) 339, 549
MluNI TGGCCA 2 cut(s) 339, 549
Mly113I GGCGCC 1 cut(s) 1103
MlyI GAGTC 2 cut(s) 59, 726
MmeI TCCRAC 2 cut(s) 168, 1007
Mox20I TGGCCA 2 cut(s) 339, 549
MroXI GAANNNNTTC 1 cut(s) 1149
MscI TGGCCA 2 cut(s) 339, 549
MseI TTAA 5 cut(s) 204, 1191, 1332, 1353, 1506
MslI CAYNNNNRTG 2 cut(s) 345, 555
Msp20I TGGCCA 2 cut(s) 339, 549
MspA1I CMGCKG 1 cut(s) 518
MunI CAATTG 3 cut(s) 483, 1062, 1214
MwoI GCNNNNNNNGC 2 cut(s) 254, 1102
NarI GGCGCC 1 cut(s) 1103
NdeI CATATG 1 cut(s) 1175
NdeII GATC 6 cut(s) 16, 407, 521, 673, 735, 1549
NlaIV GGNNCC 6 cut(s) 706, 805, 1104, 1386, 1433, 1447
NmuCI GTSAC 2 cut(s) 763, 950
NsbI TGCGCA 1 cut(s) 1457
NspI RCATGY 1 cut(s) 397
OliI CACNNNNGTG 1 cut(s) 555
PceI AGGCCT 1 cut(s) 1415
PciI ACATGT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 1149
PfeI GAWTC 8 cut(s) 269, 324, 370, 421, 645, 745, 1034, 1253
PflMI CCANNNNNTGG 2 cut(s) 536, 1160
PkrI GCNGC 2 cut(s) 517, 1054
PleI GAGTC 2 cut(s) 59, 725
PluTI GGCGCC 1 cut(s) 1106
PpsI GAGTC 2 cut(s) 59, 725
Ppu21I YACGTR 2 cut(s) 364, 1138
PpuMI RGGWCCY 2 cut(s) 786, 1432
PscI ACATGT 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 609
Psp5II RGGWCCY 2 cut(s) 786, 1432
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 6 cut(s) 706, 805, 1104, 1386, 1433, 1447
PspPI GGNCC 4 cut(s) 572, 684, 786, 1432
PspPPI RGGWCCY 2 cut(s) 786, 1432
PsuI RGATCY 2 cut(s) 521, 673
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 4 cut(s) 805, 1304, 1447, 1530
RsaNI GTAC 4 cut(s) 804, 1303, 1446, 1529
RseI CAYNNNNRTG 2 cut(s) 345, 555
SaqAI TTAA 5 cut(s) 204, 1191, 1332, 1353, 1506
SatI GCNGC 2 cut(s) 516, 1053
Sau3AI GATC 6 cut(s) 16, 407, 521, 673, 735, 1549
Sau96I GGNCC 4 cut(s) 572, 684, 786, 1432
ScaI AGTACT 1 cut(s) 1304
SchI GAGTC 2 cut(s) 59, 726
SduI GDGCHC 1 cut(s) 816
SfaNI GCATC 2 cut(s) 607, 1200
SfcI CTRYAG 1 cut(s) 1426
SfoI GGCGCC 1 cut(s) 1104
SinI GGWCC 3 cut(s) 572, 786, 1432
SmiMI CAYNNNNRTG 2 cut(s) 345, 555
SnaBI TACGTA 1 cut(s) 364
SpeI ACTAGT 1 cut(s) 625
SseBI AGGCCT 1 cut(s) 1415
SsiI CCGC 2 cut(s) 211, 801
SspDI GGCGCC 1 cut(s) 1102
SspMI CTAG 4 cut(s) 626, 1092, 1436, 1482
StuI AGGCCT 1 cut(s) 1415
StyI CCWWGG 2 cut(s) 124, 789
TaaI ACNGT 5 cut(s) 289, 601, 913, 1042, 1229
TaiI ACGT 4 cut(s) 366, 612, 834, 1140
TaqI TCGA 6 cut(s) 15, 368, 406, 748, 820, 1361
TatI WGTACW 1 cut(s) 1302
TfiI GAWTC 8 cut(s) 269, 324, 370, 421, 645, 745, 1034, 1253
Tru1I TTAA 5 cut(s) 204, 1191, 1332, 1353, 1506
Tru9I TTAA 5 cut(s) 204, 1191, 1332, 1353, 1506
TscAI CASTG 4 cut(s) 606, 918, 934, 1045
TseFI GTSAC 2 cut(s) 763, 950
TseI GCWGC 2 cut(s) 515, 1052
Tsp45I GTSAC 2 cut(s) 763, 950
TspDTI ATGAA 8 cut(s) 103, 282, 434, 494, 717, 850, 1036, 1587
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 4 cut(s) 606, 918, 934, 1045
Van91I CCANNNNNTGG 2 cut(s) 536, 1160
VpaK11BI GGWCC 3 cut(s) 572, 786, 1432
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 2 cut(s) 557, 1045
XmiI GTMKAC 2 cut(s) 874, 1373
XmnI GAANNNNTTC 1 cut(s) 1149
XspI CTAG 4 cut(s) 626, 1092, 1436, 1482
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.