Prupe.4G099000_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000956
Physical Location & Seq
Reverse (-)
5036698 .. 5038272
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G099000.1

Sequence Viewer

Length: 1575 bp
ATGAAGGTACGAGTACTCTTGTTTCTCTCAGTCCTTTCGCTTTTAGTGTCATGGACAACTTCAGATCCAGTTCTCACTGGCTTCCTACAATGCCTTCCCAAACAACCTCAATCTGCCTACCCAATCTTTGAAGCCATTTACACCCATGAAAATACCTCATTTCAATCTGTTTTGTTGGGATACATTAGGAACAGCAGATATTCTACACTTGCAACTCCAAAACCATTGGCTATTGTCACAGCACTGCATGAGTCTCATGTCCAAGCAACTGTGATTTGTGCGAAACAACACGGGTTGCAGATTCGAACCCGAAGTGGTGGCCATGATTATGAGGGCCTATCATACGTATCTGGTGTCCCCTTTATCATTCTTGACATGTTTAATCTTCGATCCATTGATATTGATGTCACGAATGAGAGCGCTTGGGTTCAGGCTGGGGCTACTATCGGTGAACTTTATTATGAAATTGCAAATAAAAGTAAGGTTCATGGGTTTCCAGCGGGAGCTTGTCCAACTGTTGGAATTGGTGGTCACTTTAGTGGTGGTGGGTACGGGCCTATGATGAGAAAATATGGTCTTACAGTGGATAACATAGAAGATGCTAAACTTGTTAATGTGAATGGGACAATTCTTGACAGGAACTCAATGGGAGAGGATCTTTTTTGGGCCATTAGAGGAGGTGGCGGAGCAAGCTTTGGGGTCATTCTTTCATGGAAGATCAGGCTTCTTCCTGTTCCAGCCAATGTGACTGTATTCAACGTTAAAAGAACTTTGGAGCAAGGTGCCCTAAATGTCATTTATAAGTGGCAATACGTAGCACCAAAGCTGCTTGATGAAATCTTCATCAGAGCAATTACGCGACTGAAGAATAGTACAGAGGGCAAGAAGACTGTGGAAGTATCATTCGTTGGTCTCTTTCTGGGACAAAGGGACAAGCTTGTGCCATTGATGAATGAAAGTTTCCCTGAACTGGATTTGCAACTAAAAGATTGTTTTGAAATGAGTTGGGTAGAATCTACTCTATTCTGGGCAGACCAGCCAATTGGAACTCCCGTAAATTTTCTACTTAATAGGCCACAGGGGCCACCAAATTTCTTCAAAAGTAAGTCTGATTATGTGAAAGAACCAATTCCAAAACAAGGAATTGAATCCATTTGGCAAATGATGCTTAAGATGGACAAAGTGTTGATGCAATGGAGCCCTTATGGTGGAAGAATGAGTATGATTCCGGAGTGGGAAACTCCATTTCCTCATAGAGATGGAAACCTATTTTTGATTCAATACGTGACGTATTGGGTGGAAGAAGGGACTGAAACCCTCAAACAACACCTTGGGTTTGTAAGAAAATTGTATGAAGGAATGACTCTATATGTTTCCAAGAGCCCCAGAGAGGCCTTCCAAAACTATAGGGATCTCGATATTGGCGCCAATCGGCAGAATCATACGGAATTTGAAACTGCGAAAGTTTATGGAAGCAAGTATTTTAAAGGAAATTTTGATAGACTGATACGTGTGAAAGTCATGGTTGATCCTTATAATTTTTTTAAGAATGAACAAAGTATCCCACCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

525

Amino Acids

59.37

Weight (kDa)

8.72

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 801, 1536
AccB1I GGYRCC 2 cut(s) 782, 1424
AccB7I CCANNNNNTGG 1 cut(s) 518
AccII CGCG 1 cut(s) 859
AccIII TCCGGA 1 cut(s) 1228
AciI CCGC 2 cut(s) 500, 684
AclI AACGTT 1 cut(s) 759
AclWI GGATC 5 cut(s) 59, 384, 663, 1419, 1523
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 4 cut(s) 1057, 1090, 1448, 1492
AcuI CTGAAG 2 cut(s) 45, 884
AcyI GRCGYC 1 cut(s) 1425
AfaI GTAC 4 cut(s) 9, 15, 551, 874
AfeI AGCGCT 1 cut(s) 421
AfiI CCNNNNNNNGG 5 cut(s) 518, 970, 1139, 1208, 1390
AflII CTTAAG 1 cut(s) 1169
AflIII ACRYGT 2 cut(s) 375, 1510
AgsI TTSAA 8 cut(s) 131, 164, 757, 998, 1099, 1148, 1280, 1454
AleI CACNNNNGTG 1 cut(s) 537
AloI GAACNNNNNNTCC 1 cut(s) 1545
AluBI AGCT 4 cut(s) 506, 693, 826, 937
AluI AGCT 4 cut(s) 506, 693, 826, 937
Alw26I GTCTC 2 cut(s) 258, 917
AlwI GGATC 5 cut(s) 59, 384, 663, 1419, 1523
Aor13HI TCCGGA 1 cut(s) 1228
Aor51HI AGCGCT 1 cut(s) 421
AoxI GGCC 7 cut(s) 319, 334, 554, 666, 1073, 1082, 1392
ApeKI GCWGC 1 cut(s) 826
ApoI RAATTY 4 cut(s) 1057, 1090, 1448, 1492
Asp700I GAANNNNTTC 1 cut(s) 1128
AspLEI GCGC 2 cut(s) 422, 1427
AspS9I GGNCC 4 cut(s) 334, 554, 666, 1082
AsuHPI GGTGA 1 cut(s) 461
AsuII TTCGAA 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 787
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 2 cut(s) 782, 1424
BanII GRGCYC 2 cut(s) 1202, 1385
BbsI GAAGAC 1 cut(s) 893
BbvI GCAGC 1 cut(s) 813
BccI CCATC 2 cut(s) 1168, 1253
BciVI GTATCC 2 cut(s) 173, 1571
BcoDI GTCTC 2 cut(s) 258, 917
BfmI CTRYAG 1 cut(s) 1405
BfoI RGCGCY 2 cut(s) 423, 1428
BfrI CTTAAG 1 cut(s) 1169
BfuI GTATCC 2 cut(s) 173, 1571
BglI GCCNNNNNGGC 1 cut(s) 1081
BisI GCNGC 1 cut(s) 827
BlsI GCNGC 1 cut(s) 828
BmcAI AGTACT 1 cut(s) 15
BmgT120I GGNCC 4 cut(s) 334, 554, 666, 1082
BmiI GGNNCC 4 cut(s) 784, 1083, 1199, 1426
BmsI GCATC 3 cut(s) 589, 1155, 1179
BpiI GAAGAC 1 cut(s) 893
Bpu14I TTCGAA 1 cut(s) 304
BsaAI YACGTR 4 cut(s) 346, 814, 1285, 1511
BsaHI GRCGYC 1 cut(s) 1425
BsaI GGTCTC 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 1330
BsaWI WCCGGW 1 cut(s) 1228
Bsc4I CCNNNNNNNGG 5 cut(s) 518, 970, 1139, 1208, 1390
Bse1I ACTGG 3 cut(s) 68, 82, 975
Bse3DI GCAATG 1 cut(s) 1199
BseAI TCCGGA 1 cut(s) 1228
BseDI CCNNGG 1 cut(s) 1330
BseLI CCNNNNNNNGG 5 cut(s) 518, 970, 1139, 1208, 1390
BseMI GCAATG 1 cut(s) 1199
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 3 cut(s) 68, 82, 975
BseRI GAGGAG 1 cut(s) 690
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 1 cut(s) 813
BseYI CCCAGC 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 859
BshFI GGCC 7 cut(s) 321, 336, 556, 668, 1075, 1084, 1394
BshNI GGYRCC 2 cut(s) 782, 1424
BsiSI CCGG 1 cut(s) 1229
BslFI GGGAC 5 cut(s) 341, 637, 936, 944, 1321
BslI CCNNNNNNNGG 5 cut(s) 518, 970, 1139, 1208, 1390
BsmAI GTCTC 2 cut(s) 258, 917
BsmFI GGGAC 5 cut(s) 341, 637, 936, 944, 1321
BsnI GGCC 7 cut(s) 321, 336, 556, 668, 1075, 1084, 1394
Bso31I GGTCTC 1 cut(s) 917
Bsp119I TTCGAA 1 cut(s) 304
Bsp1286I GDGCHC 3 cut(s) 787, 1202, 1385
Bsp13I TCCGGA 1 cut(s) 1228
Bsp143I GATC 6 cut(s) 64, 389, 655, 717, 1411, 1528
BspACI CCGC 2 cut(s) 500, 684
BspANI GGCC 7 cut(s) 321, 336, 556, 668, 1075, 1084, 1394
BspCNI CTCAG 1 cut(s) 41
BspEI TCCGGA 1 cut(s) 1228
BspFNI CGCG 1 cut(s) 859
BspLI GGNNCC 4 cut(s) 784, 1083, 1199, 1426
BspPI GGATC 5 cut(s) 59, 384, 663, 1419, 1523
BspT104I TTCGAA 1 cut(s) 304
BspT107I GGYRCC 2 cut(s) 782, 1424
BspTI CTTAAG 1 cut(s) 1169
BspTNI GGTCTC 1 cut(s) 917
BsrDI GCAATG 1 cut(s) 1199
BsrI ACTGG 3 cut(s) 68, 82, 975
BssECI CCNNGG 1 cut(s) 1330
BssMI GATC 6 cut(s) 64, 389, 655, 717, 1411, 1528
BssNI GRCGYC 1 cut(s) 1425
BssT1I CCWWGG 1 cut(s) 1330
Bst4CI ACNGT 5 cut(s) 271, 517, 583, 751, 892
BstACI GRCGYC 1 cut(s) 1425
BstAFI CTTAAG 1 cut(s) 1169
BstAPI GCANNNNNTGC 1 cut(s) 1165
BstBAI YACGTR 4 cut(s) 346, 814, 1285, 1511
BstBI TTCGAA 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 859
BstH2I RGCGCY 2 cut(s) 423, 1428
BstHHI GCGC 2 cut(s) 422, 1427
BstKTI GATC 6 cut(s) 67, 392, 658, 720, 1414, 1531
BstMAI GTCTC 2 cut(s) 258, 917
BstMBI GATC 6 cut(s) 64, 389, 655, 717, 1411, 1528
BstMWI GCNNNNNNNGC 3 cut(s) 690, 1081, 1165
BstNSI RCATGY 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 1405
BstSLI GKGCMC 1 cut(s) 787
BstSNI TACGTA 2 cut(s) 346, 814
BstUI CGCG 1 cut(s) 859
BstV1I GCAGC 1 cut(s) 813
BstV2I GAAGAC 1 cut(s) 893
BstX2I RGATCY 3 cut(s) 64, 655, 1411
BstXI CCANNNNNNTGG 1 cut(s) 1043
BstYI RGATCY 3 cut(s) 64, 655, 1411
BsuI GTATCC 2 cut(s) 173, 1571
BsuRI GGCC 7 cut(s) 321, 336, 556, 668, 1075, 1084, 1394
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 3 cut(s) 75, 242, 588
Cac8I GCNNGC 1 cut(s) 691
CfoI GCGC 2 cut(s) 422, 1427
Cfr13I GGNCC 4 cut(s) 334, 554, 666, 1082
Csp6I GTAC 4 cut(s) 8, 14, 550, 873
CviAII CATG 9 cut(s) 51, 146, 248, 257, 323, 376, 488, 711, 1522
CviQI GTAC 4 cut(s) 8, 14, 550, 873
DdeI CTNAG 1 cut(s) 28
DinI GGCGCC 1 cut(s) 1426
DpnI GATC 6 cut(s) 66, 391, 657, 719, 1413, 1530
DpnII GATC 6 cut(s) 64, 389, 655, 717, 1411, 1528
DraI TTTAAA 1 cut(s) 1486
EaeI YGGCCR 1 cut(s) 319
EciI GGCGGA 1 cut(s) 699
Eco105I TACGTA 2 cut(s) 346, 814
Eco130I CCWWGG 1 cut(s) 1330
Eco147I AGGCCT 1 cut(s) 1394
Eco24I GRGCYC 2 cut(s) 1202, 1385
Eco31I GGTCTC 1 cut(s) 917
Eco47III AGCGCT 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 45, 884
EcoO109I RGGNCCY 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 1330
EcoT38I GRGCYC 2 cut(s) 1202, 1385
EgeI GGCGCC 1 cut(s) 1426
EheI GGCGCC 1 cut(s) 1426
ErhI CCWWGG 1 cut(s) 1330
FaeI CATG 9 cut(s) 54, 149, 251, 260, 326, 379, 491, 714, 1525
FaqI GGGAC 5 cut(s) 341, 637, 936, 944, 1321
FatI CATG 9 cut(s) 50, 145, 247, 256, 322, 375, 487, 710, 1521
FauI CCCGC 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 827
FriOI GRGCYC 2 cut(s) 1202, 1385
Fsp4HI GCNGC 1 cut(s) 827
GlaI GCGC 2 cut(s) 421, 1426
GluI GCNGC 1 cut(s) 827
GsaI CCCAGC 1 cut(s) 438
HaeII RGCGCY 2 cut(s) 423, 1428
HaeIII GGCC 7 cut(s) 321, 336, 556, 668, 1075, 1084, 1394
HapII CCGG 1 cut(s) 1229
HhaI GCGC 2 cut(s) 422, 1427
Hin1I GRCGYC 1 cut(s) 1425
Hin1II CATG 9 cut(s) 54, 149, 251, 260, 326, 379, 491, 714, 1525
Hin6I GCGC 2 cut(s) 420, 1425
HinP1I GCGC 2 cut(s) 420, 1425
HindIII AAGCTT 2 cut(s) 691, 935
HinfI GANTC 8 cut(s) 251, 301, 1013, 1148, 1225, 1276, 1363, 1438
HpaII CCGG 1 cut(s) 1229
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 3 cut(s) 64, 848, 1111
Hpy188III TCNNGA 5 cut(s) 371, 409, 632, 1229, 1415
Hpy8I GTNNAC 1 cut(s) 452
HpyAV CCTTC 4 cut(s) 104, 1298, 1349, 1405
HpyCH4III ACNGT 5 cut(s) 271, 517, 583, 751, 892
HpyCH4IV ACGT 6 cut(s) 345, 759, 813, 1284, 1289, 1510
HpyCH4V TGCA 6 cut(s) 212, 247, 298, 470, 979, 1192
HpyF10VI GCNNNNNNNGC 3 cut(s) 690, 1081, 1165
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 6 cut(s) 345, 759, 813, 1284, 1289, 1510
Hsp92I GRCGYC 1 cut(s) 1425
Hsp92II CATG 9 cut(s) 54, 149, 251, 260, 326, 379, 491, 714, 1525
HspAI GCGC 2 cut(s) 420, 1425
KasI GGCGCC 1 cut(s) 1424
Kpn2I TCCGGA 1 cut(s) 1228
Kzo9I GATC 6 cut(s) 64, 389, 655, 717, 1411, 1528
LmnI GCTCC 4 cut(s) 503, 686, 775, 1197
Lsp1109I GCAGC 1 cut(s) 813
LweI GCATC 3 cut(s) 589, 1155, 1179
MaeII ACGT 6 cut(s) 345, 759, 813, 1284, 1289, 1510
MaeIII GTNAC 5 cut(s) 235, 406, 530, 745, 1285
MalI GATC 6 cut(s) 66, 391, 657, 719, 1413, 1530
MboI GATC 6 cut(s) 64, 389, 655, 717, 1411, 1528
MfeI CAATTG 1 cut(s) 1041
MflI RGATCY 3 cut(s) 64, 655, 1411
MhlI GDGCHC 3 cut(s) 787, 1202, 1385
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
Mly113I GGCGCC 1 cut(s) 1425
MlyI GAGTC 2 cut(s) 260, 1357
MmeI TCCRAC 2 cut(s) 499, 536
Mox20I TGGCCA 1 cut(s) 321
MroI TCCGGA 1 cut(s) 1228
MroXI GAANNNNTTC 1 cut(s) 1128
MscI TGGCCA 1 cut(s) 321
MseI TTAA 7 cut(s) 381, 612, 762, 1068, 1170, 1485, 1545
MslI CAYNNNNRTG 3 cut(s) 327, 537, 1257
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 500
MspCI CTTAAG 1 cut(s) 1169
MspI CCGG 1 cut(s) 1229
MunI CAATTG 1 cut(s) 1041
MvnI CGCG 1 cut(s) 859
MwoI GCNNNNNNNGC 3 cut(s) 690, 1081, 1165
NarI GGCGCC 1 cut(s) 1425
NdeII GATC 6 cut(s) 64, 389, 655, 717, 1411, 1528
NlaIII CATG 9 cut(s) 54, 149, 251, 260, 326, 379, 491, 714, 1525
NlaIV GGNNCC 4 cut(s) 784, 1083, 1199, 1426
NmuCI GTSAC 5 cut(s) 235, 406, 530, 745, 1285
NspI RCATGY 1 cut(s) 379
NspV TTCGAA 1 cut(s) 304
OliI CACNNNNGTG 1 cut(s) 537
PceI AGGCCT 1 cut(s) 1394
PciI ACATGT 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 1128
PfeI GAWTC 6 cut(s) 301, 1013, 1148, 1225, 1276, 1438
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 1 cut(s) 828
PleI GAGTC 2 cut(s) 259, 1357
PluTI GGCGCC 1 cut(s) 1428
PpsI GAGTC 2 cut(s) 259, 1357
Ppu21I YACGTR 4 cut(s) 346, 814, 1285, 1511
PscI ACATGT 1 cut(s) 375
PsiI TTATAA 2 cut(s) 801, 1536
Psp1406I AACGTT 1 cut(s) 759
PspFI CCCAGC 1 cut(s) 434
PspN4I GGNNCC 4 cut(s) 784, 1083, 1199, 1426
PspPI GGNCC 4 cut(s) 334, 554, 666, 1082
PsuI RGATCY 3 cut(s) 64, 655, 1411
RsaI GTAC 4 cut(s) 9, 15, 551, 874
RsaNI GTAC 4 cut(s) 8, 14, 550, 873
RseI CAYNNNNRTG 3 cut(s) 327, 537, 1257
SaqAI TTAA 7 cut(s) 381, 612, 762, 1068, 1170, 1485, 1545
SatI GCNGC 1 cut(s) 827
Sau3AI GATC 6 cut(s) 64, 389, 655, 717, 1411, 1528
Sau96I GGNCC 4 cut(s) 334, 554, 666, 1082
ScaI AGTACT 1 cut(s) 15
SchI GAGTC 2 cut(s) 260, 1357
SduI GDGCHC 3 cut(s) 787, 1202, 1385
SfaNI GCATC 3 cut(s) 589, 1155, 1179
SfcI CTRYAG 1 cut(s) 1405
SfiI GGCCNNNNNGGCC 1 cut(s) 1081
SfoI GGCGCC 1 cut(s) 1426
SfuI TTCGAA 1 cut(s) 304
SmiMI CAYNNNNRTG 3 cut(s) 327, 537, 1257
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
SnaBI TACGTA 2 cut(s) 346, 814
SseBI AGGCCT 1 cut(s) 1394
SsiI CCGC 2 cut(s) 500, 684
SspDI GGCGCC 1 cut(s) 1424
StuI AGGCCT 1 cut(s) 1394
StyI CCWWGG 1 cut(s) 1330
TaaI ACNGT 5 cut(s) 271, 517, 583, 751, 892
TaiI ACGT 6 cut(s) 348, 762, 816, 1287, 1292, 1513
TaqI TCGA 3 cut(s) 304, 388, 1416
TatI WGTACW 2 cut(s) 13, 872
TfiI GAWTC 6 cut(s) 301, 1013, 1148, 1225, 1276, 1438
Tru1I TTAA 7 cut(s) 381, 612, 762, 1068, 1170, 1485, 1545
Tru9I TTAA 7 cut(s) 381, 612, 762, 1068, 1170, 1485, 1545
TscAI CASTG 3 cut(s) 82, 249, 588
TseFI GTSAC 5 cut(s) 235, 406, 530, 745, 1285
TseI GCWGC 1 cut(s) 826
Tsp45I GTSAC 5 cut(s) 235, 406, 530, 745, 1285
TspGWI ACGGA 1 cut(s) 1460
TspRI CASTG 3 cut(s) 82, 249, 588
Van91I CCANNNNNTGG 1 cut(s) 518
Vha464I CTTAAG 1 cut(s) 1169
XapI RAATTY 4 cut(s) 1057, 1090, 1448, 1492
XceI RCATGY 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 1128
ZrmI AGTACT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.