MD10G1243900.v1.1

Berberine and berberine like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
33844616 .. 33846253
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1243900.v1.1.491

Sequence Viewer

Length: 1638 bp
ATGAAGTTCTTTCCGGTACTTCTCTCGTTCCTTTTGCTCTCAGTTTCATGCGCAACTTCAGCCCCAGTTTCATTTGATGGCTTCCTCCAATGCCTTACCAGAAAAACTCAGTCTACCCTTCCAATCTTTGATTCCATTTATACCACTCAAAACACCTCATATGATTCCATTTTGCATGCACGTATCAATAATCTCGTATATTCTACACCTGAATATCCAAAACCGTTGGCCATAATCGCAGTCAAGAGTGTATCCCACATTCAAGCAACCATTCTCTGTGCAAAACATAATGGATTGCAAGTTAAAACCCGAAGCGGGGGCCATGACTTCGAGGGCATATCCTACGTGTCGGATGTGCCCTTTGTCATGATTGACATGTTCATCCATCTTAATTCCATTGATGTCAATGTTGCCGATGAGAGCGTGTGGGTTCAATCCGGAGCTCTTATTGGACAAATTTACCATGCAATTTCTACCAAAACCCGAGTTTATGGGTTTCCTGCTGGGATTTGTCCAAAAATGGCAGCTGGTGGTCACTTTGGTGGTGGAGGGTATGGAGTTATGATGAGAAAATACGGGCTTGCTATCGATAATATTGTCGATGCTAAGATCATTACTGCGAATGGTAAACTCCTTGATAGAAAGTCAATGGGAGAAGACCTTTTTTGGGCCATCCGAGGAGGTGGTTCACCTAACTTTGGGGTCATTCTTTCATGGAAGCTCAAGTTGGCTCCAGTTCCGGCGAATGTTACCGTGTTCAATGTGAAAAGGACTATAGCACAAGGTGCAACGGATCTCGTTTACAAGTGGCAAAATGTCGCACCCAGGATGCCCAAAGACCTTTTCCTTAGAGCAATGCCACAAGTCAAGAAAAACAGTACCACGGGAGAAAAGACAGTGGAAGTATCGTTCATAGCCCATTTTCTGGGAAGCAGTGACAAGCTTGTTGCATTGTTGAACAAGAGGTTCCCTGAACTGGGGATTCAATCAACAGACTGCCATGAAATGAGTTGGGTTGAATCCATTGTGTTTTGGGCAGACTACCCACTTGGAACGCCAATAAGCGTTCTACTTAACACGACAAACATGGCAGTCTACTCCAAAGGTAAGTCTGACTATGTGAAGGAACCGCTTTCAAAAGACGTTATAGAATCTATCTGGAAGCATATGATCAAGATAGAGAAGATTTTATTGGATATAAACCCTTACGGTGGAAGAATGGCTGAGATTTCGGCGACAGCGACTCCATATCCTCACAGAGCTGGAAACCTATTCCATGTTATGTATTATACGTATTGGACTGAAGCGGGAATTAATGCCACAAACAGGTATGTTAGGTTAACAAGAGAATTGGCAGACATGATGACTCCATATGTCTCGAAGAATCCAAGAGAGGCCTATCAAAACTACAAGGATCTCGACATCGGTGTGAATCAAGATAATCAGACTGACTTTGCAACGGCTGCAGTTTATGGAATGAAGTATTATAAAGATAATTTTGCTAGATTGGTGCTTGTGAAGACCATGATTGATCCTGAAAACTTTTTCAAGAATAAGCAAAGTATCCCAACTCTTCCAAGGGTGGGAGATGGATATATAAGAGGAATCTTACCTCTCATAGAGAGTGCTATTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

546

Amino Acids

60.63

Weight (kDa)

9.06

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 75 - 212 3.3e-22 FAD binding domain
BBE PF08031 466 - 523 8e-17 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1488
Acc16I TGCGCA 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 925
AccI GTMKAC 2 cut(s) 113, 1095
AccIII TCCGGA 1 cut(s) 437
AciI CCGC 3 cut(s) 315, 1130, 1307
AclWI GGATC 3 cut(s) 801, 1422, 1526
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 2 cut(s) 42, 1323
AdeI CACNNNGTG 1 cut(s) 785
AfaI GTAC 2 cut(s) 18, 880
AflIII ACRYGT 2 cut(s) 345, 375
AgsI TTSAA 8 cut(s) 263, 434, 760, 958, 986, 1019, 1137, 1549
AjnI CCWGG 1 cut(s) 824
AjuI GAANNNNNNNTTGG 8 cut(s) 115, 147, 710, 742, 827, 859, 1175, 1207
AleI CACNNNNGTG 1 cut(s) 540
AloI GAACNNNNNNTCC 2 cut(s) 893, 925
AluBI AGCT 5 cut(s) 443, 527, 721, 943, 1262
AluI AGCT 5 cut(s) 443, 527, 721, 943, 1262
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 1 cut(s) 1381
AlwI GGATC 3 cut(s) 801, 1422, 1526
Ama87I CYCGRG 1 cut(s) 483
Aor13HI TCCGGA 1 cut(s) 437
AoxI GGCC 4 cut(s) 228, 319, 669, 1395
ApeKI GCWGC 2 cut(s) 524, 1463
ApoI RAATTY 1 cut(s) 456
AseI ATTAAT 1 cut(s) 1314
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 319, 669
AsuHPI GGTGA 1 cut(s) 681
AvaI CYCGRG 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 360
BalI TGGCCA 1 cut(s) 230
BanII GRGCYC 1 cut(s) 445
BbsI GAAGAC 2 cut(s) 663, 1526
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 536, 1450
BccI CCATC 4 cut(s) 71, 393, 680, 1583
BceAI ACGGC 1 cut(s) 1476
BciT130I CCWGG 1 cut(s) 826
BciVI GTATCC 2 cut(s) 262, 1574
BclI TGATCA 1 cut(s) 1170
BcoDI GTCTC 1 cut(s) 1381
BfaI CTAG 1 cut(s) 1503
BfmI CTRYAG 2 cut(s) 774, 1464
BfuI GTATCC 2 cut(s) 262, 1574
BisI GCNGC 2 cut(s) 525, 1464
BlsI GCNGC 2 cut(s) 526, 1465
Bme1390I CCNGG 1 cut(s) 826
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 2 cut(s) 319, 669
BmiI GGNNCC 4 cut(s) 320, 732, 968, 1128
BmrFI CCNGG 1 cut(s) 826
BmrI ACTGGG 2 cut(s) 59, 986
BmsI GCATC 2 cut(s) 592, 819
BmuI ACTGGG 2 cut(s) 59, 986
BpiI GAAGAC 2 cut(s) 663, 1526
BpmI CTGGAG 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 707
Bsa29I ATCGAT 1 cut(s) 588
BsaAI YACGTR 3 cut(s) 182, 346, 1293
BsaJI CCNNGG 4 cut(s) 676, 824, 882, 1577
BsaWI WCCGGW 2 cut(s) 13, 437
BsaXI ACNNNNNCTCC 2 cut(s) 1228, 1258
Bse1I ACTGG 3 cut(s) 65, 734, 981
Bse3DI GCAATG 1 cut(s) 861
BseAI TCCGGA 1 cut(s) 437
BseBI CCWGG 1 cut(s) 826
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 4 cut(s) 676, 824, 882, 1577
BseGI GGATG 4 cut(s) 358, 381, 672, 834
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 3 cut(s) 54, 122, 1215
BseNI ACTGG 3 cut(s) 65, 734, 981
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 2 cut(s) 536, 1450
BseYI CCCAGC 1 cut(s) 503
BshFI GGCC 4 cut(s) 230, 321, 671, 1397
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 3 cut(s) 14, 438, 740
BsmAI GTCTC 1 cut(s) 1381
BsnI GGCC 4 cut(s) 230, 321, 671, 1397
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 360, 445
Bsp13I TCCGGA 1 cut(s) 437
Bsp143I GATC 5 cut(s) 609, 793, 1170, 1414, 1531
BspACI CCGC 3 cut(s) 315, 1130, 1307
BspANI GGCC 4 cut(s) 230, 321, 671, 1397
BspCNI CTCAG 3 cut(s) 53, 121, 1216
BspDI ATCGAT 1 cut(s) 588
BspEI TCCGGA 1 cut(s) 437
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 4 cut(s) 320, 732, 968, 1128
BspMAI CTGCAG 1 cut(s) 1468
BspPI GGATC 3 cut(s) 801, 1422, 1526
BsrDI GCAATG 1 cut(s) 861
BsrI ACTGG 3 cut(s) 65, 734, 981
BssECI CCNNGG 4 cut(s) 676, 824, 882, 1577
BssMI GATC 5 cut(s) 609, 793, 1170, 1414, 1531
BssT1I CCWWGG 1 cut(s) 1577
Bst2UI CCWGG 1 cut(s) 826
Bst4CI ACNGT 5 cut(s) 225, 754, 878, 898, 1211
Bst6I CTCTTC 1 cut(s) 1578
BstAPI GCANNNNNTGC 2 cut(s) 785, 1463
BstBAI YACGTR 3 cut(s) 182, 346, 1293
BstC8I GCNNGC 2 cut(s) 177, 582
BstDEI CTNAG 5 cut(s) 40, 108, 606, 848, 1224
BstDSI CCRYGG 1 cut(s) 882
BstF5I GGATG 4 cut(s) 358, 381, 672, 834
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 5 cut(s) 612, 796, 1173, 1417, 1534
BstMAI GTCTC 1 cut(s) 1381
BstMBI GATC 5 cut(s) 609, 793, 1170, 1414, 1531
BstMWI GCNNNNNNNGC 4 cut(s) 59, 236, 785, 1463
BstNI CCWGG 1 cut(s) 826
BstNSI RCATGY 2 cut(s) 179, 379
BstSCI CCNGG 1 cut(s) 824
BstSFI CTRYAG 2 cut(s) 774, 1464
BstSLI GKGCMC 1 cut(s) 360
BstSNI TACGTA 1 cut(s) 1293
BstV1I GCAGC 2 cut(s) 536, 1450
BstV2I GAAGAC 2 cut(s) 663, 1526
BstX2I RGATCY 2 cut(s) 793, 1414
BstYI RGATCY 2 cut(s) 793, 1414
Bsu15I ATCGAT 1 cut(s) 588
BsuI GTATCC 2 cut(s) 262, 1574
BsuRI GGCC 4 cut(s) 230, 321, 671, 1397
BsuTUI ATCGAT 1 cut(s) 588
BtgI CCRYGG 1 cut(s) 882
BtsCI GGATG 4 cut(s) 358, 381, 672, 834
BtsI GCAGTG 1 cut(s) 940
BtsIMutI CAGTG 2 cut(s) 903, 940
Cac8I GCNNGC 2 cut(s) 177, 582
CciI TCATGA 1 cut(s) 366
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 319, 669
ClaI ATCGAT 1 cut(s) 588
Csp6I GTAC 2 cut(s) 17, 879
CviQI GTAC 2 cut(s) 17, 879
DdeI CTNAG 5 cut(s) 40, 108, 606, 848, 1224
DpnI GATC 5 cut(s) 611, 795, 1172, 1416, 1533
DpnII GATC 5 cut(s) 609, 793, 1170, 1414, 1531
DraIII CACNNNGTG 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 1578
EarI CTCTTC 1 cut(s) 1578
Ecl136II GAGCTC 1 cut(s) 443
Eco105I TACGTA 1 cut(s) 1293
Eco130I CCWWGG 1 cut(s) 1577
Eco147I AGGCCT 1 cut(s) 1397
Eco24I GRGCYC 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 42, 1323
Eco88I CYCGRG 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 824
EcoT14I CCWWGG 1 cut(s) 1577
EcoT38I GRGCYC 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 1577
FauI CCCGC 2 cut(s) 308, 1300
FauNDI CATATG 3 cut(s) 160, 1167, 1372
FbaI TGATCA 1 cut(s) 1170
FblI GTMKAC 2 cut(s) 113, 1095
Fnu4HI GCNGC 2 cut(s) 525, 1464
FokI GGATG 4 cut(s) 365, 368, 659, 841
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 2 cut(s) 525, 1464
FspBI CTAG 1 cut(s) 1503
FspI TGCGCA 1 cut(s) 52
GlaI GCGC 1 cut(s) 52
GluI GCNGC 2 cut(s) 525, 1464
GsaI CCCAGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 717
HaeIII GGCC 4 cut(s) 230, 321, 671, 1397
HapII CCGG 3 cut(s) 14, 438, 740
HhaI GCGC 1 cut(s) 53
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 1341
HindII GTYRAC 1 cut(s) 1341
HindIII AAGCTT 1 cut(s) 941
HpaI GTTAAC 1 cut(s) 1341
HpaII CCGG 3 cut(s) 14, 438, 740
HphI GGTGA 1 cut(s) 681
Hpy166II GTNNAC 6 cut(s) 114, 629, 689, 802, 1096, 1341
Hpy188I TCNGA 4 cut(s) 352, 677, 1114, 1446
Hpy8I GTNNAC 6 cut(s) 114, 629, 689, 802, 1096, 1341
HpyAV CCTTC 2 cut(s) 128, 1117
HpyCH4III ACNGT 5 cut(s) 225, 754, 878, 898, 1211
HpyCH4IV ACGT 4 cut(s) 181, 345, 1143, 1292
HpyCH4V TGCA 9 cut(s) 175, 179, 281, 298, 467, 788, 950, 1457, 1466
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 236, 785, 1463
HpyF3I CTNAG 5 cut(s) 40, 108, 606, 848, 1224
HpySE526I ACGT 4 cut(s) 181, 345, 1143, 1292
HspAI GCGC 1 cut(s) 51
Kpn2I TCCGGA 1 cut(s) 437
Ksp22I TGATCA 1 cut(s) 1170
KspAI GTTAAC 1 cut(s) 1341
Kzo9I GATC 5 cut(s) 609, 793, 1170, 1414, 1531
LmnI GCTCC 2 cut(s) 440, 736
Lsp1109I GCAGC 2 cut(s) 536, 1450
LweI GCATC 2 cut(s) 592, 819
MaeI CTAG 1 cut(s) 1503
MaeII ACGT 4 cut(s) 181, 345, 1143, 1292
MaeIII GTNAC 3 cut(s) 533, 748, 935
MalI GATC 5 cut(s) 611, 795, 1172, 1416, 1533
MboI GATC 5 cut(s) 609, 793, 1170, 1414, 1531
MboII GAAGA 6 cut(s) 668, 1195, 1227, 1393, 1531, 1565
MflI RGATCY 2 cut(s) 793, 1414
MhlI GDGCHC 2 cut(s) 360, 445
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 6 cut(s) 391, 456, 468, 1311, 1349, 1495
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 1237, 1360
MmeI TCCRAC 1 cut(s) 330
Mox20I TGGCCA 1 cut(s) 230
MroI TCCGGA 1 cut(s) 437
MscI TGGCCA 1 cut(s) 230
MseI TTAA 5 cut(s) 303, 390, 1074, 1314, 1340
MslI CAYNNNNRTG 2 cut(s) 540, 1427
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 3 cut(s) 14, 438, 740
MspR9I CCNGG 1 cut(s) 826
MvaI CCWGG 1 cut(s) 826
MwoI GCNNNNNNNGC 4 cut(s) 59, 236, 785, 1463
NdeI CATATG 3 cut(s) 160, 1167, 1372
NdeII GATC 5 cut(s) 609, 793, 1170, 1414, 1531
NlaIV GGNNCC 4 cut(s) 320, 732, 968, 1128
NmuCI GTSAC 2 cut(s) 533, 935
NsbI TGCGCA 1 cut(s) 52
NspI RCATGY 2 cut(s) 179, 379
OliI CACNNNNGTG 1 cut(s) 540
PaeI GCATGC 1 cut(s) 179
PagI TCATGA 1 cut(s) 366
PceI AGGCCT 1 cut(s) 1397
PciI ACATGT 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 1238
PfeI GAWTC 8 cut(s) 131, 164, 982, 1019, 1151, 1384, 1432, 1605
PflMI CCANNNNNTGG 1 cut(s) 925
PkrI GCNGC 2 cut(s) 526, 1465
PleI GAGTC 2 cut(s) 1237, 1360
PpsI GAGTC 2 cut(s) 1237, 1360
Ppu21I YACGTR 3 cut(s) 182, 346, 1293
PscI ACATGT 1 cut(s) 375
PshBI ATTAAT 1 cut(s) 1314
PsiI TTATAA 1 cut(s) 1488
Psp124BI GAGCTC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 824
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 824
PspN4I GGNNCC 4 cut(s) 320, 732, 968, 1128
PspPI GGNCC 2 cut(s) 319, 669
PstI CTGCAG 1 cut(s) 1468
PsuI RGATCY 2 cut(s) 793, 1414
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 18, 880
RsaNI GTAC 2 cut(s) 17, 879
RseI CAYNNNNRTG 2 cut(s) 540, 1427
SacI GAGCTC 1 cut(s) 445
SaqAI TTAA 5 cut(s) 303, 390, 1074, 1314, 1340
SatI GCNGC 2 cut(s) 525, 1464
Sau3AI GATC 5 cut(s) 609, 793, 1170, 1414, 1531
Sau96I GGNCC 2 cut(s) 319, 669
SchI GAGTC 2 cut(s) 1237, 1360
ScrFI CCNGG 1 cut(s) 826
SduI GDGCHC 2 cut(s) 360, 445
SfaNI GCATC 2 cut(s) 592, 819
SfcI CTRYAG 2 cut(s) 774, 1464
SmiMI CAYNNNNRTG 2 cut(s) 540, 1427
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SnaBI TACGTA 1 cut(s) 1293
SphI GCATGC 1 cut(s) 179
Sse9I AATT 6 cut(s) 391, 456, 468, 1311, 1349, 1495
SseBI AGGCCT 1 cut(s) 1397
SsiI CCGC 3 cut(s) 315, 1130, 1307
SspI AATATT 1 cut(s) 595
SspMI CTAG 1 cut(s) 1503
SstI GAGCTC 1 cut(s) 445
StuI AGGCCT 1 cut(s) 1397
StyD4I CCNGG 1 cut(s) 824
StyI CCWWGG 1 cut(s) 1577
TaaI ACNGT 5 cut(s) 225, 754, 878, 898, 1211
TaiI ACGT 4 cut(s) 184, 348, 1146, 1295
TaqI TCGA 5 cut(s) 330, 588, 600, 1379, 1419
TasI AATT 6 cut(s) 391, 456, 468, 1311, 1349, 1495
TfiI GAWTC 8 cut(s) 131, 164, 982, 1019, 1151, 1384, 1432, 1605
Tru1I TTAA 5 cut(s) 303, 390, 1074, 1314, 1340
Tru9I TTAA 5 cut(s) 303, 390, 1074, 1314, 1340
TscAI CASTG 2 cut(s) 903, 940
TseFI GTSAC 2 cut(s) 533, 935
TseI GCWGC 2 cut(s) 524, 1463
Tsp45I GTSAC 2 cut(s) 533, 935
TspDTI ATGAA 8 cut(s) 17, 36, 60, 370, 702, 901, 1017, 1493
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 2 cut(s) 903, 940
Van91I CCANNNNNTGG 1 cut(s) 925
VspI ATTAAT 1 cut(s) 1314
XapI RAATTY 1 cut(s) 456
XceI RCATGY 2 cut(s) 179, 379
XmiI GTMKAC 2 cut(s) 113, 1095
XspI CTAG 1 cut(s) 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.