RchiOBHm_Chr5g0017951

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
12489655 .. 12490002
348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29818

Sequence Viewer

Length: 348 bp
ATGCCTCAAGTGTTGAATACTAGTTTGGGTAACAAGACTGTGGAAGTGTCATTCATTGGTTTCTTCTTGGGACAAAGTGATGAGCTTCTTTCTTTGATAAATAGGAGTCTTCCTGAATTGGGTTTACAGAAAATGGATTGCTATGAAATGAGTTGGGTAGAATCTACGGTATTTTGGGCTAATAATTACCCAGTTGGAACTTCCATAGACGTTCTACTTGAAAGGCCCAAGGGGCCAACAGATAACTTCAAAGGCAAGTCTGACTACGTGAAAGAACCAATTCCAAAACAAGACATAGAATTCATATTGAAGGAGCTACTTAAGATAGAAAACTTGTGGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.19

Weight (kDa)

4.65

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 119
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 4 cut(s) 16, 221, 250, 310
AhlI ACTAGT 1 cut(s) 20
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 85, 316
AluI AGCT 2 cut(s) 85, 316
AoxI GGCC 2 cut(s) 224, 233
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 225, 233
BbsI GAAGAC 1 cut(s) 101
BccI CCATC 1 cut(s) 334
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 320
BglI GCCNNNNNGGC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 225, 233
BmiI GGNNCC 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 191
BshFI GGCC 2 cut(s) 226, 235
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 2 cut(s) 226, 235
BspANI GGCC 2 cut(s) 226, 235
BspLI GGNNCC 1 cut(s) 234
BspTI CTTAAG 1 cut(s) 320
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 40, 169
BstAFI CTTAAG 1 cut(s) 320
BstBAI YACGTR 1 cut(s) 268
BstF5I GGATG 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 101
BsuRI GGCC 2 cut(s) 226, 235
BtsCI GGATG 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 225, 233
CviJI RGCY 5 cut(s) 85, 179, 226, 235, 316
CviKI_1 RGCY 5 cut(s) 85, 179, 226, 235, 316
Eco130I CCWWGG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaiI YATR 4 cut(s) 144, 206, 296, 305
FaqI GGGAC 1 cut(s) 84
FspBI CTAG 1 cut(s) 21
HaeIII GGCC 2 cut(s) 226, 235
HinfI GANTC 2 cut(s) 106, 161
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 2 cut(s) 40, 169
HpyCH4IV ACGT 2 cut(s) 210, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpySE526I ACGT 2 cut(s) 210, 267
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 2 cut(s) 126, 204
MaeI CTAG 1 cut(s) 21
MaeII ACGT 2 cut(s) 210, 267
MaeIII GTNAC 1 cut(s) 29
MboII GAAGA 2 cut(s) 55, 101
MluCI AATT 4 cut(s) 116, 184, 279, 299
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 1 cut(s) 321
MspCI CTTAAG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 161
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 225, 233
SaqAI TTAA 1 cut(s) 321
Sau96I GGNCC 2 cut(s) 225, 233
SchI GAGTC 1 cut(s) 115
SetI ASST 4 cut(s) 87, 213, 270, 318
SfiI GGCCNNNNNGGCC 1 cut(s) 232
SmlI CTYRAG 2 cut(s) 6, 320
SmoI CTYRAG 2 cut(s) 6, 320
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 4 cut(s) 116, 184, 279, 299
SspMI CTAG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 40, 169
TaiI ACGT 2 cut(s) 213, 270
TasI AATT 4 cut(s) 116, 184, 279, 299
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TspDTI ATGAA 3 cut(s) 43, 159, 292
Vha464I CTTAAG 1 cut(s) 320
XapI RAATTY 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.