Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0019739

Physical Location & Seq

Genomic Coordinates Forward (+)

40997242 .. 40998376

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1332700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATCATCATCCAATATCCGAAGACCGCAAAACCCCGCTTCTCCCTCTCCACGATCAAATCCAACGGTCGCAGAGCTTCCATTCATCCTTGAAATCCATTCTAACACTCAAGAACTTCTTCGTCCTCTTCGGACCTCTTCTGTGCACCATCATATGCCTCTGTGTGAAGCTAGATGGCCCGGTGGCCAGCCGGAACATGTTGGCGGTGCTGGTATGGGTGTTTGCTTGGTGGCTCACGGAGGCAGTGCCCATGCCAGTTACCTCAATGTCCCCTCTCTTCCTCTTCCCGCTCTTCGGAATTGCCTCTGCAGATGATGTTGCCCACTCTTACATGAACGATGTTATTGCCCTTGTTCTTGGAAGCTCGATTTTGGCTCTCGCCGTTGAGCATTATAACATGCCCAAAAGATTGGCCTTGAATAATAATATTATACCCACCTCAAATCTTATTTCTCCATCCACCTTATATTTACACCCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

162

Amino Acids

17.88

Weight (kDa)

6.63

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_sulph_symp	PF00939	61 - 140	3.8e-09	Sodium:sulfate symporter transmembrane region
CitMHS	PF03600	75 - 140	1.1e-06	Citrate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019739)

Species	Orthologous Gene IDs
malus_domestica	MD10G1332700.v1.1 MD10G1333600.v1.1
pyrus_communis	pycom10g28290
rosa_laevigata	RLG00000025412 RLG00000025415
rosa_roxburghii	Rroxscaffold_6G00424760
rosa_samantha	Rh5BG013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	292
AciI	CCGC	4 cut(s)	28, 38, 206, 290
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	94, 421
AluBI	AGCT	3 cut(s)	78, 172, 366
AluI	AGCT	3 cut(s)	78, 172, 366
Alw21I	GWGCWC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	178, 186, 414
ApaLI	GTGCAC	1 cut(s)	145
Asp700I	GAANNNNTTC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	134, 179
AsuC2I	CCSGG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	2 cut(s)	149, 252
BalI	TGGCCA	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	149
BccI	CCATC	3 cut(s)	158, 170, 466
BceAI	ACGGC	1 cut(s)	368
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 179
BmrFI	CCNGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	9
BseGI	GGATG	3 cut(s)	10, 86, 458
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	257
BseSI	GKGCMC	2 cut(s)	149, 252
BseYI	CCCAGC	1 cut(s)	478
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	180, 188, 416
BsiEI	CGRYCG	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	182, 193
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	180, 188, 416
Bsp1286I	GDGCHC	2 cut(s)	149, 252
Bsp143I	GATC	2 cut(s)	4, 55
BspACI	CCGC	4 cut(s)	28, 38, 206, 290
BspANI	GGCC	3 cut(s)	180, 188, 416
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	4, 55
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	5 cut(s)	134, 144, 284, 290, 299
BstC8I	GCNNGC	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	10, 86, 458
BstKTI	GATC	2 cut(s)	7, 58
BstMBI	GATC	2 cut(s)	4, 55
BstMCI	CGRYCG	1 cut(s)	71
BstNSI	RCATGY	2 cut(s)	202, 403
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	2 cut(s)	149, 252
BstV2I	GAAGAC	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	180, 188, 416
BtsCI	GGATG	3 cut(s)	10, 86, 458
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	134, 179
CviAII	CATG	4 cut(s)	199, 253, 334, 400
CviJI	RGCY	9 cut(s)	78, 172, 180, 188, 192, 235, 366, 377, 416
CviKI_1	RGCY	9 cut(s)	78, 172, 180, 188, 192, 235, 366, 377, 416
DpnI	GATC	2 cut(s)	6, 57
DpnII	GATC	2 cut(s)	4, 55
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	5 cut(s)	134, 144, 284, 290, 299
EarI	CTCTTC	5 cut(s)	134, 144, 284, 290, 299
Eco47I	GGWCC	1 cut(s)	134
FaeI	CATG	4 cut(s)	202, 256, 337, 403
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	4 cut(s)	198, 252, 333, 399
FauI	CCCGC	2 cut(s)	45, 297
FauNDI	CATATG	1 cut(s)	155
FokI	GGATG	2 cut(s)	73, 445
FspBI	CTAG	1 cut(s)	173
GsaI	CCCAGC	1 cut(s)	482
HaeIII	GGCC	3 cut(s)	180, 188, 416
HapII	CCGG	2 cut(s)	182, 193
Hin1II	CATG	4 cut(s)	202, 256, 337, 403
HpaII	CCGG	2 cut(s)	182, 193
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	3 cut(s)	22, 134, 299
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	147, 311
Hsp92II	CATG	4 cut(s)	202, 256, 337, 403
Kzo9I	GATC	2 cut(s)	4, 55
LguI	GCTCTTC	1 cut(s)	299
LpnPI	CCDG	5 cut(s)	195, 197, 202, 206, 270
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	6, 57
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	2 cut(s)	4, 55
MboII	GAAGA	7 cut(s)	35, 112, 121, 131, 271, 277, 286
MhlI	GDGCHC	2 cut(s)	149, 252
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	300
MluNI	TGGCCA	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	88
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	2 cut(s)	182, 193
MspR9I	CCNGG	1 cut(s)	182
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	2 cut(s)	4, 55
NlaIII	CATG	4 cut(s)	202, 256, 337, 403
NspI	RCATGY	2 cut(s)	202, 403
PciI	ACATGT	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	119
PscI	ACATGT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	396
PspFI	CCCAGC	1 cut(s)	478
PspPI	GGNCC	2 cut(s)	134, 179
PstI	CTGCAG	1 cut(s)	313
SapI	GCTCTTC	1 cut(s)	299
Sau3AI	GATC	2 cut(s)	4, 55
Sau96I	GGNCC	2 cut(s)	134, 179
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	149, 252
SetI	ASST	7 cut(s)	80, 139, 174, 266, 368, 443, 467
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	4 cut(s)	28, 38, 206, 290
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	368
TasI	AATT	1 cut(s)	300
TscAI	CASTG	1 cut(s)	252
TspDTI	ATGAA	2 cut(s)	75, 350
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	252
VneI	GTGCAC	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	134
XceI	RCATGY	2 cut(s)	202, 403
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.