Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0019739

Physical Location & Seq

Genomic Coordinates Forward (+)

41091176 .. 41092171

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1333600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGGGATTATTCAAGTCCAAGCCCCGAACCCCCGCCGACATCGTTCGTCAGACCCGGGATTTACTTGTCTATGCCCAGCGCGCTCCCGATCCTCGCGAAAGCAAACGCGAGAAAAAAGGGCCTCTTTTGAGCACCGTTATTAGCCTCTGTGTCAACTTAGATGGCACCGTCGCTAGCCGGAATATGTTGGCAGTGCTTGCCTGGGTCTTTGCTAGGTGGCTCACGGAGGCCGTGCCGATGCCAGTTACCTCAATGTCCCCTCTCTTCCTCTTCCCGCTCTTCGGAATTGCCTCTGCAGATGATGTTGCCCACTCTTACATGAACGATGTTATTGCCCTTGGTTCTTGGAAGCTTTATTTTGGCTCTCGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

126

Amino Acids

13.97

Weight (kDa)

10.0

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019739)

Species	Orthologous Gene IDs
malus_domestica	MD10G1332700.v1.1 MD10G1333600.v1.1
pyrus_communis	pycom10g28290
rosa_laevigata	RLG00000025412 RLG00000025415
rosa_roxburghii	Rroxscaffold_6G00424760
rosa_samantha	Rh5BG013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	280
AccII	CGCG	3 cut(s)	84, 99, 111
AciI	CCGC	2 cut(s)	36, 278
AclWI	GGATC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	122, 231
AspLEI	GCGC	2 cut(s)	84, 86
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	2 cut(s)	58, 59
AsuNHI	GCTAGC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	137
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	2 cut(s)	218, 357
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	58, 59
BfaI	CTAG	2 cut(s)	177, 216
BfmI	CTRYAG	1 cut(s)	297
Bme1390I	CCNGG	3 cut(s)	58, 59, 205
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	3 cut(s)	58, 59, 205
BmsI	GCATC	1 cut(s)	231
BmtI	GCTAGC	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	58, 59
BsaJI	CCNNGG	3 cut(s)	57, 204, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	3 cut(s)	57, 204, 340
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	245
BsePI	GCGCGC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	3 cut(s)	84, 99, 111
BshFI	GGCC	2 cut(s)	124, 233
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	58, 181
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	124, 233
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	91
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	2 cut(s)	36, 278
BspANI	GGCC	2 cut(s)	124, 233
BspFNI	CGCG	3 cut(s)	84, 99, 111
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	86
BspQI	GCTCTTC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	57, 204, 340
BssHII	GCGCGC	1 cut(s)	82
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	139, 172
Bst6I	CTCTTC	3 cut(s)	272, 278, 287
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	84, 178, 201
BstDEI	CTNAG	1 cut(s)	160
BstFNI	CGCG	3 cut(s)	84, 99, 111
BstHHI	GCGC	2 cut(s)	84, 86
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 200
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	3 cut(s)	56, 57, 203
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	3 cut(s)	84, 99, 111
BsuRI	GGCC	2 cut(s)	124, 233
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	84, 178, 201
CfoI	GCGC	2 cut(s)	84, 86
Cfr13I	GGNCC	1 cut(s)	122
Cfr9I	CCCGGG	1 cut(s)	57
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	8 cut(s)	25, 124, 147, 180, 223, 233, 355, 366
CviKI_1	RGCY	8 cut(s)	25, 124, 147, 180, 223, 233, 355, 366
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	3 cut(s)	272, 278, 287
EarI	CTCTTC	3 cut(s)	272, 278, 287
Eco130I	CCWWGG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	75, 188, 323
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	321
FauI	CCCGC	2 cut(s)	43, 285
FspBI	CTAG	2 cut(s)	177, 216
GlaI	GCGC	2 cut(s)	83, 85
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	124, 233
HapII	CCGG	2 cut(s)	58, 181
HhaI	GCGC	2 cut(s)	84, 86
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	2 cut(s)	82, 84
HinP1I	GCGC	2 cut(s)	82, 84
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	353
HpaII	CCGG	2 cut(s)	58, 181
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	54, 287
Hpy188III	TCNNGA	2 cut(s)	89, 98
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	139, 172
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 200
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	2 cut(s)	82, 84
Kzo9I	GATC	1 cut(s)	91
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	6 cut(s)	71, 92, 190, 194, 217, 258
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	177, 216
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	93
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	259, 265, 274
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	1 cut(s)	288
MnlI	CCTC	8 cut(s)	105, 135, 158, 223, 262, 273, 281, 304
MspI	CCGG	2 cut(s)	58, 181
MspR9I	CCNGG	3 cut(s)	58, 59, 205
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	3 cut(s)	84, 99, 111
MwoI	GCNNNNNNNGC	2 cut(s)	83, 200
NciI	CCSGG	2 cut(s)	58, 59
NdeII	GATC	1 cut(s)	91
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	169
NruI	TCGCGA	1 cut(s)	99
PauI	GCGCGC	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	301
PteI	GCGCGC	1 cut(s)	82
RruI	TCGCGA	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	287
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	58, 59, 205
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	3 cut(s)	221, 254, 357
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	297
SmaI	CCCGGG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	2 cut(s)	36, 278
SspMI	CTAG	2 cut(s)	177, 216
StyD4I	CCNGG	3 cut(s)	56, 57, 203
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	139, 172
TasI	AATT	1 cut(s)	288
TscAI	CASTG	1 cut(s)	201
TspDTI	ATGAA	2 cut(s)	17, 338
TspGWI	ACGGA	1 cut(s)	242
TspMI	CCCGGG	1 cut(s)	57
TspRI	CASTG	1 cut(s)	201
XmaI	CCCGGG	1 cut(s)	57
XspI	CTAG	2 cut(s)	177, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.