Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0019739

Physical Location & Seq

Genomic Coordinates Reverse (-)

45639181 .. 45639821

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAACGATGTCATTGCCCTTGTTCTTGGAAGCTTTATTTTGGCTCTTGCTGTTGAGCATTATAACATCCATAAAAGATTCGCCTTAAACCTTTCGTTAGCATGTGGATGCACAACGTGGCAACGGGGTGATGATGGTGCCGGTAGCCACCGGAATCCTTCACCACTTTCCGACTGGTCCCAACCAGCCAGTCGTTGTGGGCAAGTTTTGCAGAGCTGTGATACTAGGGGTGATATACTCAGCAACCATAGGAGGGATGAGCAGTCTCACTGGGACAGGCGTGAATCTCATATTGATTGGAATGTGGAAGAGCTAGCCGATCACATTCAGCACCTGGTTTCTTTTTGGTTTCCCTTCGGCTTTGTTGATGTTCTTTGCAATGTGGGTGATCCTTTGCTTCTTGTATTGCTCGAGAAGCTCGGGCCAGACTCTCTCTTCTTATTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

150

Amino Acids

16.89

Weight (kDa)

5.49

Isoelectric Point (pI)

64.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019739)

Species	Orthologous Gene IDs
malus_domestica	MD10G1332700.v1.1 MD10G1333600.v1.1
pyrus_communis	pycom10g28290
rosa_laevigata	RLG00000025412 RLG00000025415
rosa_roxburghii	Rroxscaffold_6G00424760
rosa_samantha	Rh5BG013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	33, 216, 313, 418
AluI	AGCT	4 cut(s)	33, 216, 313, 418
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	383
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	2 cut(s)	410, 419
AoxI	GGCC	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	177, 422
AsuHPI	GGTGA	4 cut(s)	140, 153, 242, 398
AsuNHI	GCTAGC	1 cut(s)	313
AvaI	CYCGRG	2 cut(s)	410, 419
AvaII	GGWCC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	137
BccI	CCATC	1 cut(s)	128
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	2 cut(s)	225, 314
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	177
BmeT110I	CYCGRG	2 cut(s)	410, 419
BmgT120I	GGNCC	2 cut(s)	177, 422
BmiI	GGNNCC	2 cut(s)	139, 179
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	98
BmtI	GCTAGC	1 cut(s)	317
BmuI	ACTGGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	179, 189, 275
Bse3DI	GCAATG	2 cut(s)	12, 385
BseBI	CCWGG	1 cut(s)	335
BseGI	GGATG	3 cut(s)	66, 113, 262
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	2 cut(s)	12, 385
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	3 cut(s)	179, 189, 275
BshFI	GGCC	1 cut(s)	424
BshNI	GGYRCC	1 cut(s)	137
BsiHKCI	CYCGRG	2 cut(s)	410, 419
BsiSI	CCGG	2 cut(s)	141, 151
BslFI	GGGAC	2 cut(s)	163, 287
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	163, 287
BsnI	GGCC	1 cut(s)	424
BsoBI	CYCGRG	2 cut(s)	410, 419
Bsp143I	GATC	2 cut(s)	319, 388
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	139, 179
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	12, 385
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	179, 189, 275
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	2 cut(s)	319, 388
Bst2UI	CCWGG	1 cut(s)	335
Bst6I	CTCTTC	2 cut(s)	303, 440
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	3 cut(s)	66, 113, 262
BstKTI	GATC	2 cut(s)	322, 391
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	319, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 415
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	66, 113, 262
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	315
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	177, 422
CsiI	ACCWGGT	1 cut(s)	333
CviAII	CATG	1 cut(s)	102
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	321, 390
DpnII	GATC	2 cut(s)	319, 388
DraIII	CACNNNGTG	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	303, 440
EarI	CTCTTC	2 cut(s)	303, 440
Eco47I	GGWCC	1 cut(s)	177
Eco88I	CYCGRG	2 cut(s)	410, 419
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	105
FaiI	YATR	6 cut(s)	63, 72, 103, 236, 249, 291
FaqI	GGGAC	2 cut(s)	163, 287
FatI	CATG	1 cut(s)	101
FokI	GGATG	3 cut(s)	53, 120, 269
FspBI	CTAG	2 cut(s)	225, 314
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	2 cut(s)	141, 151
Hin1II	CATG	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	4 cut(s)	78, 154, 284, 428
HpaII	CCGG	2 cut(s)	141, 151
HphI	GGTGA	4 cut(s)	140, 153, 242, 398
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	412
HpyAV	CCTTC	2 cut(s)	168, 364
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	111, 211, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 415
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	319, 388
LguI	GCTCTTC	1 cut(s)	303
LweI	GCATC	1 cut(s)	98
MabI	ACCWGGT	1 cut(s)	333
MaeI	CTAG	2 cut(s)	225, 314
MaeII	ACGT	1 cut(s)	116
MalI	GATC	2 cut(s)	321, 390
MboI	GATC	2 cut(s)	319, 388
MboII	GAAGA	2 cut(s)	320, 427
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	106
MspI	CCGG	2 cut(s)	141, 151
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	208, 415
NdeII	GATC	2 cut(s)	319, 388
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	2 cut(s)	139, 179
NspI	RCATGY	1 cut(s)	105
PaeR7I	CTCGAG	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	78, 154, 284
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	139, 179
PspPI	GGNCC	2 cut(s)	177, 422
PstNI	CAGNNNCTG	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	319, 388
Sau96I	GGNCC	2 cut(s)	177, 422
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	7 cut(s)	35, 93, 119, 218, 315, 336, 420
SexAI	ACCWGGT	1 cut(s)	333
SfaNI	GCATC	1 cut(s)	98
Sfr274I	CTCGAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SspMI	CTAG	2 cut(s)	225, 314
StyD4I	CCNGG	1 cut(s)	333
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	411, 445
TfiI	GAWTC	3 cut(s)	78, 154, 284
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	177
XceI	RCATGY	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	410
XspI	CTAG	2 cut(s)	225, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.