Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019739

Physical Location & Seq

Genomic Coordinates Reverse (-)

45919748 .. 45920678

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCGGGCCTACACAGATTACAGTACTCTTCTGCGGGGATTCACTGAATCCTCCGCTGCTCCTACTTGGGATTTGCGCCACGACAGCGTTTGTCAGCATGCGGATGCACAACGTGTCAGCTACGGTGATGATGATGCCGGTGGCGACCGGGATTTTGCTTCGTTTTCCGGTGGGTCTCGACCAGTCCGTCGTGTCCAGCAACTTTTGCAGAGCTGTGGTTCTGGGGGTGACGTACTCCGCTGCCATCGGAAGGATGAGTACTCTGACGGGGACAGGTGTCAATCTGATATTGGTTGGAATGTGGATGAGCTATTTTCCAGAGGAGGAGCCGATCAGCTTCAGCACTTGGTTCCTCTTTGGGTTTCCCATGGCTTTGTTGAGTTTCCTGGCCTTGTGGATCATATACTTTGCTGCTTGTATTGCTCCAAAAGTTCAGGCCCTGCTCTCTTTGCTTATTTGGACAAAGCCCATTTGAAGAGGGAGCTGGAAATGTTAGGTATCACACCTTCAATTAGTATGTTGATAGTTCTGTGGATGACAAGAAGCATTACAGATGAGGTTCCCGGCTGGGGAGCCCTCTTCAATGGGCGTGCAGGTGATGGAACTGCCAGTGTCGGTATTGGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

209

Amino Acids

22.86

Weight (kDa)

5.26

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019739)

Species	Orthologous Gene IDs
malus_domestica	MD10G1332700.v1.1 MD10G1333600.v1.1
pyrus_communis	pycom10g28290
rosa_laevigata	RLG00000025412 RLG00000025415
rosa_roxburghii	Rroxscaffold_6G00424760
rosa_samantha	Rh5BG013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	584
AasI	GACNNNNNNGTC	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	584
AciI	CCGC	5 cut(s)	4, 34, 54, 101, 238
AclWI	GGATC	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	3 cut(s)	25, 234, 260
AfiI	CCNNNNNNNGG	2 cut(s)	250, 569
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	475, 510, 583
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	5 cut(s)	120, 213, 310, 337, 484
AluI	AGCT	5 cut(s)	120, 213, 310, 337, 484
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	405
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	4 cut(s)	6, 388, 436, 622
ApeKI	GCWGC	3 cut(s)	56, 240, 411
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	6, 437, 623
AsuC2I	CCSGG	2 cut(s)	149, 564
AsuHPI	GGTGA	3 cut(s)	137, 239, 608
BanII	GRGCYC	1 cut(s)	577
BarI	GAAGNNNNNNTAC	4 cut(s)	242, 274, 490, 522
BbvI	GCAGC	3 cut(s)	43, 227, 398
BccI	CCATC	2 cut(s)	252, 593
BciT130I	CCWGG	1 cut(s)	387
BcnI	CCSGG	2 cut(s)	149, 564
BcoDI	GTCTC	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	584
BisI	GCNGC	3 cut(s)	57, 241, 412
BlsI	GCNGC	3 cut(s)	58, 242, 413
BmcAI	AGTACT	2 cut(s)	25, 260
Bme1390I	CCNGG	3 cut(s)	149, 387, 564
BmgT120I	GGNCC	3 cut(s)	6, 437, 623
BmiI	GGNNCC	4 cut(s)	328, 351, 561, 574
BmrFI	CCNGG	3 cut(s)	149, 387, 564
BmsI	GCATC	2 cut(s)	94, 124
BoxI	GACNNNNGTC	1 cut(s)	276
BpuMI	CCSGG	2 cut(s)	149, 564
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 569
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	182, 609
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	4 cut(s)	109, 259, 310, 540
BseLI	CCNNNNNNNGG	2 cut(s)	250, 569
BseNI	ACTGG	2 cut(s)	182, 609
BseRI	GAGGAG	2 cut(s)	336, 339
BseXI	GCAGC	3 cut(s)	43, 227, 398
BseYI	CCCAGC	1 cut(s)	567
BsgI	GTGCAG	1 cut(s)	612
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	4 cut(s)	8, 390, 438, 624
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	4 cut(s)	138, 148, 168, 564
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	250, 569
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	8, 390, 438, 624
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	331, 397
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	5 cut(s)	4, 34, 54, 101, 238
BspANI	GGCC	4 cut(s)	8, 390, 438, 624
BspLI	GGNNCC	4 cut(s)	328, 351, 561, 574
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	182, 609
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	2 cut(s)	331, 397
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	23, 125
Bst6I	CTCTTC	3 cut(s)	33, 470, 584
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstC8I	GCNNGC	3 cut(s)	6, 99, 591
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	4 cut(s)	109, 259, 310, 540
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	334, 400
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	331, 397
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 205, 420, 449
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	101
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	3 cut(s)	147, 385, 562
BstV1I	GCAGC	3 cut(s)	43, 227, 398
BsuRI	GGCC	4 cut(s)	8, 390, 438, 624
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	4 cut(s)	109, 259, 310, 540
BtsIMutI	CAGTG	2 cut(s)	42, 616
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	3 cut(s)	6, 99, 591
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	6, 437, 623
Csp6I	GTAC	3 cut(s)	24, 233, 259
CviAII	CATG	2 cut(s)	98, 368
CviQI	GTAC	3 cut(s)	24, 233, 259
DpnI	GATC	2 cut(s)	333, 399
DpnII	GATC	2 cut(s)	331, 397
DraIII	CACNNNGTG	1 cut(s)	113
DrdI	GACNNNNNNGTC	1 cut(s)	186
DseDI	GACNNNNNNGTC	1 cut(s)	186
Eam1104I	CTCTTC	3 cut(s)	33, 470, 584
EarI	CTCTTC	3 cut(s)	33, 470, 584
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	2 cut(s)	101, 371
FaiI	YATR	5 cut(s)	99, 369, 402, 404, 518
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	97, 367
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	57, 241, 412
FokI	GGATG	4 cut(s)	116, 266, 317, 547
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	3 cut(s)	57, 241, 412
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	3 cut(s)	57, 241, 412
GsaI	CCCAGC	1 cut(s)	571
HaeIII	GGCC	4 cut(s)	8, 390, 438, 624
HapII	CCGG	4 cut(s)	138, 148, 168, 564
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	101, 371
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	39, 47
HpaII	CCGG	4 cut(s)	138, 148, 168, 564
HphI	GGTGA	3 cut(s)	137, 239, 608
Hpy188I	TCNGA	3 cut(s)	249, 265, 286
Hpy188III	TCNNGA	2 cut(s)	177, 318
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	244, 516
HpyCH4III	ACNGT	2 cut(s)	23, 125
HpyCH4IV	ACGT	2 cut(s)	112, 231
HpyCH4V	TGCA	3 cut(s)	107, 208, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 205, 420, 449
HpySE526I	ACGT	2 cut(s)	112, 231
Hsp92II	CATG	2 cut(s)	101, 371
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	331, 397
LmnI	GCTCC	5 cut(s)	64, 326, 428, 481, 572
Lsp1109I	GCAGC	3 cut(s)	43, 227, 398
LweI	GCATC	2 cut(s)	94, 124
MaeII	ACGT	2 cut(s)	112, 231
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	333, 399
MboI	GATC	2 cut(s)	331, 397
MboII	GAAGA	3 cut(s)	20, 487, 571
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	7 cut(s)	61, 314, 317, 363, 471, 550, 587
MseI	TTAA	1 cut(s)	628
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	2 cut(s)	56, 240
MspI	CCGG	4 cut(s)	138, 148, 168, 564
MspR9I	CCNGG	3 cut(s)	149, 387, 564
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	84, 205, 420, 449
NciI	CCSGG	2 cut(s)	149, 564
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	2 cut(s)	331, 397
NlaIII	CATG	2 cut(s)	101, 371
NlaIV	GGNNCC	4 cut(s)	328, 351, 561, 574
NmuCI	GTSAC	1 cut(s)	227
NspI	RCATGY	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	101
PaqCI	CACCTGC	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	39, 47
PkrI	GCNGC	3 cut(s)	58, 242, 413
PshAI	GACNNNNGTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	4 cut(s)	328, 351, 561, 574
PspPI	GGNCC	3 cut(s)	6, 437, 623
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	3 cut(s)	25, 234, 260
RsaNI	GTAC	3 cut(s)	24, 233, 259
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	628
SatI	GCNGC	3 cut(s)	57, 241, 412
Sau3AI	GATC	2 cut(s)	331, 397
Sau96I	GGNCC	3 cut(s)	6, 437, 623
ScaI	AGTACT	2 cut(s)	25, 260
ScrFI	CCNGG	3 cut(s)	149, 387, 564
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	2 cut(s)	94, 124
SmiMI	CAYNNNNRTG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	5 cut(s)	4, 34, 54, 101, 238
StyD4I	CCNGG	3 cut(s)	147, 385, 562
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	23, 125
TaiI	ACGT	2 cut(s)	115, 234
TaqI	TCGA	1 cut(s)	178
TasI	AATT	1 cut(s)	510
TatI	WGTACW	2 cut(s)	23, 258
TfiI	GAWTC	2 cut(s)	39, 47
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TscAI	CASTG	2 cut(s)	49, 616
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	56, 240, 411
Tsp45I	GTSAC	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	49, 616
XceI	RCATGY	1 cut(s)	101
ZrmI	AGTACT	2 cut(s)	25, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.