Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0019739

Physical Location & Seq

Genomic Coordinates Reverse (-)

983349 .. 984088

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAACAACGCAGAATGGAACACTACGAAGCAAATTAAACAAAACCATTTCCTTTCATCTCGTCACAATAAAACAATCAAGAAGAAGAATCACATGGACAGTCCCACCACCCCTGAGAAGACCCCACTTCTCCCAGTTGAGGATAATTCAATCCAAAAATCAAAGAGCAGCTGCTTCTGTTCGTCATTGAAATCAGTTCTAACATCCAACAACCTCTCCATTCTCCTAGGACCTATTTTGAGCACCATTGTGTGCCTTTGTGTCAAGTTCGATGGCAATGTGACTAGCCGGAACATGCTAGCTGTGCTTGCTTGGATCTTTGCCTGGTGGCTCACAGAGGCTCTGCCTATGCCAATAACATCAATGTCTCCGCTCTTTCTCTTCCCATTCTTCGGCATTGCCTCCGCGGATGATGTTGCACACTTGTACATGAACGATGTCATTGCCCTTGTTCTTGGAAGCTTTATTTTGGCTCTTGCTGTTGAGCATTATAACATCCATAAAAGATTGGCCTTAAACATTACACTGTTATTCTGCGGAGATCCTCTGAATCCGCCATTGCTGCTTCTGGGAATATGTGCTACCACAACTCCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

199

Amino Acids

22.02

Weight (kDa)

8.55

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_sulph_symp	PF00939	94 - 177	5.7e-10	Sodium:sulfate symporter transmembrane region
CitMHS	PF03600	107 - 188	3e-08	Citrate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019739)

Species	Orthologous Gene IDs
malus_domestica	MD10G1332700.v1.1 MD10G1333600.v1.1
pyrus_communis	pycom10g28290
rosa_laevigata	RLG00000025412 RLG00000025415
rosa_roxburghii	Rroxscaffold_6G00424760
rosa_samantha	Rh5BG013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	1 cut(s)	407
AciI	CCGC	5 cut(s)	371, 405, 407, 537, 554
AclWI	GGATC	2 cut(s)	323, 536
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	139, 392
AgsI	TTSAA	2 cut(s)	150, 190
AjnI	CCWGG	1 cut(s)	323
AleI	CACNNNNGTG	1 cut(s)	248
AluBI	AGCT	3 cut(s)	171, 302, 462
AluI	AGCT	3 cut(s)	171, 302, 462
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	323, 536
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	3 cut(s)	168, 171, 562
AspA2I	CCTAGG	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	230
AvrII	CCTAGG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	158, 180, 549
BccI	CCATC	1 cut(s)	266
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	3 cut(s)	227, 285, 299
BisI	GCNGC	3 cut(s)	169, 172, 563
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	3 cut(s)	170, 173, 564
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	325
BmrI	ACTGGG	1 cut(s)	128
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	226, 405
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 574, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 392
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	4 cut(s)	283, 396, 441, 557
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	226, 405
BseGI	GGATG	3 cut(s)	203, 415, 495
BseLI	CCNNNNNNNGG	2 cut(s)	139, 392
BseMI	GCAATG	4 cut(s)	283, 396, 441, 557
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	3 cut(s)	158, 180, 549
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	139, 392
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	315, 541
BspACI	CCGC	5 cut(s)	371, 405, 407, 537, 554
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	407
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	323, 536
BsrBI	CCGCTC	1 cut(s)	373
BsrDI	GCAATG	4 cut(s)	283, 396, 441, 557
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	226, 405
BssMI	GATC	2 cut(s)	315, 541
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	101, 528
Bst6I	CTCTTC	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	300, 309
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	203, 415, 495
BstFNI	CGCG	1 cut(s)	407
BstKTI	GATC	2 cut(s)	318, 544
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	2 cut(s)	315, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 308, 562
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	3 cut(s)	158, 180, 549
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	2 cut(s)	315, 541
BstYI	RGATCY	2 cut(s)	315, 541
BsuRI	GGCC	1 cut(s)	512
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	203, 415, 495
BtsIMutI	CAGTG	1 cut(s)	524
Cac8I	GCNNGC	2 cut(s)	300, 309
Cfr13I	GGNCC	1 cut(s)	230
Cfr42I	CCGCGG	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	3 cut(s)	94, 295, 430
CviJI	RGCY	8 cut(s)	171, 288, 302, 331, 341, 462, 473, 512
CviKI_1	RGCY	8 cut(s)	171, 288, 302, 331, 341, 462, 473, 512
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	317, 543
DpnII	GATC	2 cut(s)	315, 541
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
EciI	GGCGGA	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	3 cut(s)	97, 298, 433
FaiI	YATR	8 cut(s)	95, 296, 350, 431, 492, 501, 577, 598
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	3 cut(s)	93, 294, 429
Fnu4HI	GCNGC	3 cut(s)	169, 172, 563
FokI	GGATG	3 cut(s)	190, 422, 482
Fsp4HI	GCNGC	3 cut(s)	169, 172, 563
FspBI	CTAG	3 cut(s)	227, 285, 299
GluI	GCNGC	3 cut(s)	169, 172, 563
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	3 cut(s)	97, 298, 433
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	2 cut(s)	88, 550
HpaII	CCGG	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	549
Hpy188III	TCNNGA	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	101, 528
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 308, 562
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	97, 298, 433
KspI	CCGCGG	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	315, 541
LpnPI	CCDG	6 cut(s)	126, 147, 302, 310, 337, 554
Lsp1109I	GCAGC	3 cut(s)	158, 180, 549
MaeI	CTAG	3 cut(s)	227, 285, 299
MaeIII	GTNAC	2 cut(s)	62, 280
MalI	GATC	2 cut(s)	317, 543
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	2 cut(s)	315, 541
MboII	GAAGA	5 cut(s)	94, 97, 130, 373, 382
MflI	RGATCY	2 cut(s)	315, 541
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	2 cut(s)	33, 145
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	133, 224, 331, 412, 555
MseI	TTAA	2 cut(s)	36, 515
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	2 cut(s)	171, 407
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	304, 308, 562
NdeII	GATC	2 cut(s)	315, 541
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	97, 298, 433
NmuCI	GTSAC	2 cut(s)	62, 280
NspI	RCATGY	1 cut(s)	298
OliI	CACNNNNGTG	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	88, 550
PkrI	GCNGC	3 cut(s)	170, 173, 564
PpuMI	RGGWCCY	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	230
PspPPI	RGGWCCY	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	315, 541
PvuII	CAGCTG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	248
SacII	CCGCGG	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	36, 515
SatI	GCNGC	3 cut(s)	169, 172, 563
Sau3AI	GATC	2 cut(s)	315, 541
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	5 cut(s)	173, 216, 235, 304, 464
Sfr303I	CCGCGG	1 cut(s)	408
SgrBI	CCGCGG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	33, 145
SsiI	CCGC	5 cut(s)	371, 405, 407, 537, 554
SspMI	CTAG	3 cut(s)	227, 285, 299
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	101, 528
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	33, 145
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	88, 550
Tru1I	TTAA	2 cut(s)	36, 515
Tru9I	TTAA	2 cut(s)	36, 515
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	2 cut(s)	62, 280
TseI	GCWGC	3 cut(s)	168, 171, 562
Tsp45I	GTSAC	2 cut(s)	62, 280
TspDTI	ATGAA	3 cut(s)	17, 45, 446
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	230
XceI	RCATGY	1 cut(s)	298
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	3 cut(s)	227, 285, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.