Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0020403

Physical Location & Seq

Genomic Coordinates Reverse (-)

2155951 .. 2156397

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1024800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATTCAACCTTACTCAGCCATGCCAGGCATGAATATGAAATGTTTCGCTTATGAGGAGCTAAATGAAGCTACTAATGGATTCAAGAAAAAACTAGGTCAGGGCTCTTTTGCTACGGTTTTTAAAGGTGTTTTAGGATTCGATAATGGGAAATCTGTTACCGTCAAAAGATTGGACACTATGGTTGGAGAAAATGAGTCGGAATTCAAAGCTGAAGTTAGCGCAATTGGTAAAACAAACCACAGAAATTCAGTCCAACTACTTGCGTTCTGTAATGAAGGGCAGCACCAAATTATTGTCTACGAGTTTATGAGGAATGGTTCCCTAGCAAGCTTCATTTTTGGAGAGTCAAGGCCAAAATGGTATCAGAGACAACAAATTGCCTTGGGTACTGCAAGAGGGCTGTTGTATTTGCATGAAGAGTGTAACAACCAAATCATACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

149

Amino Acids

16.68

Weight (kDa)

8.44

Isoelectric Point (pI)

18.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	28 - 141	9.8e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	29 - 148	2.2e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0020403)

Species	Orthologous Gene IDs
malus_domestica	MD11G1024800.v1.1 MD11G1024900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0077611
rosa_laevigata	RLG00000001265
rosa_roxburghii	Rroxscaffold_1G00003770
rosa_rugosa	Rorug07G0280800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	203, 247
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	8, 85, 208
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	61, 71, 212, 333
AluI	AGCT	4 cut(s)	61, 71, 212, 333
Alw26I	GTCTC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	2 cut(s)	203, 247
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	2 cut(s)	95, 326
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	118, 163
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	364
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	22, 31, 416
CviJI	RGCY	8 cut(s)	20, 61, 71, 105, 212, 333, 355, 403
CviKI_1	RGCY	8 cut(s)	20, 61, 71, 105, 212, 333, 355, 403
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	16
DraI	TTTAAA	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	25, 34, 419
FaiI	YATR	8 cut(s)	23, 32, 38, 54, 182, 311, 417, 440
FatI	CATG	3 cut(s)	21, 30, 415
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	2 cut(s)	95, 326
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	25, 34, 419
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	5 cut(s)	4, 81, 138, 197, 347
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	202, 369
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	118, 163
HpyCH4V	TGCA	2 cut(s)	395, 415
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	3 cut(s)	25, 34, 419
HspAI	GCGC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	12, 39, 86
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	95, 326
MaeIII	GTNAC	2 cut(s)	157, 425
MboII	GAAGA	1 cut(s)	431
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	5 cut(s)	203, 225, 247, 291, 378
MlyI	GAGTC	2 cut(s)	206, 356
MmeI	TCCRAC	3 cut(s)	166, 180, 280
MnlI	CCTC	3 cut(s)	49, 306, 392
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	27
NlaIII	CATG	3 cut(s)	25, 34, 419
NlaIV	GGNNCC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	4, 81, 138
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	2 cut(s)	205, 355
PpsI	GAGTC	2 cut(s)	205, 355
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	322
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	206, 356
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	7 cut(s)	13, 63, 73, 100, 130, 214, 335
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	5 cut(s)	203, 225, 247, 291, 378
SspMI	CTAG	2 cut(s)	95, 326
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	118, 163
TaqI	TCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	203, 225, 247, 291, 378
TfiI	GAWTC	3 cut(s)	4, 81, 138
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	283
TspDTI	ATGAA	6 cut(s)	47, 53, 81, 291, 325, 432
XapI	RAATTY	2 cut(s)	203, 247
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	2 cut(s)	95, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.