RchiOBHm_Chr5g0077611

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
83487435 .. 83488013
579 bp
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UTR
Exon/CDS
Intron
PRQ35217

Sequence Viewer

Length: 579 bp
ATGGTTATTTCACAAATATATTATAGAAAAGCACTGGTGAGCAAACTCTACCCAGTCCTTCAAGGCATCAATCTAAAATGTTTCAGTTACATGGAGCTAAAAGAAGCTACCAACGGATTCATGGAAGAACTGGGTTGTGGTGCTTTTTCAACAGTTTTTAAAGGAGTTTTAGCATCTGATGATGGGAGATGCATTGCTGTCAAAAGATTGGACACAATAGCACGAAAAGACGACTTGGAGTTCAAAGCCGAAGTAAGCTCAATTGGCAGAACAAATCACAGAAATCTAGTCCAACTACTTGGATTTTGTGATGAGGGGCAACACCGGTTTTTTGTATACGAGTTTATGCTCAATGGCTCTCTAGCAAGCTTTCTTTTCAGAGAGTCAAGTCCAAACTGGTATATAAGAAGGGACATTGCCTTGGGAACTGCAAGAGGGCTTTTTTATTTGCATGACGAATTCAGCAGCCAGTTTATACATTGTGACATTAAGCCTAAAAACATTCTACTAGATGACTCTTTCACAGTAAGAATTGCCGACTTTGGAGTAGCAAAGCTTCTGAAAACAGACCAAACCTGA

Protein Analysis

192

Amino Acids

21.91

Weight (kDa)

7.63

Isoelectric Point (pI)

25.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 40 - 190 7.7e-29 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 41 - 191 3.5e-30 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020403)

Species Orthologous Gene IDs
malus_domestica MD11G1024800.v1.1 MD11G1024900.v1.1
rosa_chinensis RchiOBHm_Chr5g0077611
rosa_laevigata RLG00000001265
rosa_roxburghii Rroxscaffold_1G00003770
rosa_rugosa Rorug07G0280800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 458
AgeI ACCGGT 1 cut(s) 324
AgsI TTSAA 3 cut(s) 62, 150, 244
AluBI AGCT 5 cut(s) 97, 107, 258, 369, 556
AluI AGCT 5 cut(s) 97, 107, 258, 369, 556
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 458
AsiGI ACCGGT 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 49
BarI GAAGNNNNNNTAC 2 cut(s) 540, 572
BbvI GCAGC 1 cut(s) 477
BccI CCATC 1 cut(s) 176
BfaI CTAG 3 cut(s) 287, 362, 509
BisI GCNGC 1 cut(s) 466
BlsI GCNGC 1 cut(s) 467
BmrI ACTGGG 2 cut(s) 47, 140
BmsI GCATC 3 cut(s) 75, 179, 182
BmuI ACTGGG 2 cut(s) 47, 140
BsaJI CCNNGG 1 cut(s) 420
BsaWI WCCGGW 1 cut(s) 324
Bse118I RCCGGY 1 cut(s) 324
Bse1I ACTGG 5 cut(s) 39, 53, 135, 401, 469
Bse3DI GCAATG 2 cut(s) 192, 414
BseDI CCNNGG 1 cut(s) 420
BseMI GCAATG 2 cut(s) 192, 414
BseNI ACTGG 5 cut(s) 39, 53, 135, 401, 469
BseXI GCAGC 1 cut(s) 477
BshTI ACCGGT 1 cut(s) 324
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 192, 414
BsrFI RCCGGY 1 cut(s) 324
BsrI ACTGG 5 cut(s) 39, 53, 135, 401, 469
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 420
BssNAI GTATAC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 420
Bst1107I GTATAC 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 154, 526
BstC8I GCNNGC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 477
BstXI CCANNNNNNTGG 1 cut(s) 299
BstZ17I GTATAC 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 324
CspAI ACCGGT 1 cut(s) 324
CviAII CATG 3 cut(s) 91, 121, 452
DraI TTTAAA 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 94, 124, 455
FaqI GGGAC 1 cut(s) 425
FatI CATG 3 cut(s) 90, 120, 451
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 466
FspBI CTAG 3 cut(s) 287, 362, 509
GluI GCNGC 1 cut(s) 466
HapII CCGG 1 cut(s) 325
Hin1II CATG 3 cut(s) 94, 124, 455
HindIII AAGCTT 2 cut(s) 367, 554
HinfI GANTC 3 cut(s) 117, 383, 515
HpaII CCGG 1 cut(s) 325
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 178, 380, 561
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 68, 402
HpyCH4III ACNGT 2 cut(s) 154, 526
HpyCH4V TGCA 3 cut(s) 192, 431, 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
Hsp92II CATG 3 cut(s) 94, 124, 455
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 20, 66, 116, 338, 382, 482
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 3 cut(s) 75, 179, 182
MaeI CTAG 3 cut(s) 287, 362, 509
MaeIII GTNAC 2 cut(s) 86, 482
MboII GAAGA 1 cut(s) 137
MfeI CAATTG 1 cut(s) 261
MluCI AATT 3 cut(s) 261, 458, 531
MlyI GAGTC 2 cut(s) 392, 509
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 2 cut(s) 307, 428
Mph1103I ATGCAT 1 cut(s) 194
MseI TTAA 2 cut(s) 159, 489
MspI CCGG 1 cut(s) 325
MunI CAATTG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 264
NlaIII CATG 3 cut(s) 94, 124, 455
NmuCI GTSAC 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 194
PfeI GAWTC 1 cut(s) 117
PinAI ACCGGT 1 cut(s) 324
PkrI GCNGC 1 cut(s) 467
PleI GAGTC 2 cut(s) 391, 509
PpsI GAGTC 2 cut(s) 391, 509
SaqAI TTAA 2 cut(s) 159, 489
SatI GCNGC 1 cut(s) 466
SchI GAGTC 2 cut(s) 392, 509
SetI ASST 6 cut(s) 99, 109, 260, 371, 558, 578
SfaNI GCATC 3 cut(s) 75, 179, 182
Sse9I AATT 3 cut(s) 261, 458, 531
SspMI CTAG 3 cut(s) 287, 362, 509
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 154, 526
TasI AATT 3 cut(s) 261, 458, 531
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 159, 489
Tru9I TTAA 2 cut(s) 159, 489
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 1 cut(s) 109
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 39
XapI RAATTY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 3 cut(s) 287, 362, 509
Zsp2I ATGCAT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.