Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0020403

Physical Location & Seq

Genomic Coordinates Reverse (-)

2163808 .. 2164551

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1024900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCAAAATGCAAAATGGCCTGGCGGTAATTTTGAGGAATTTACATCGGTAACTGAGGATTGGTGTAGACAGAATTGCTTAGCAGATTGTTTTTGTGCTGTTGCCATTTTCAATGAAGGAGGGTGTGCGATGAAGAGAATTCCTCTTTCGAATGGTAGGATCGACTCGAGTATTGGTGGAAAAGCTCTCATCAAAGTAAGGAAGGGCAACTCAACTTTGCTACCTGAAGTTCCAAATACGAAGAAGAAAGATTACTCAACCTTGATCCTCATTGGAACAGTGCTCCTAAGTAGCTCGGGGTTGCTAAACTTGATTTTGCTGTTAACAACCTATTTGGTTGTTTCTCATTTTTTTTATAGAAAAGCAAGGGTGATTCAACCTTACTCAGCCATGTCAGGCATGAATATGAAATGTTTTGCTTACGAGGAGCTAAACAAAACTACTAATGGTTCAAGGAAAAAACTAGGTCAGGGCTCTTTTGCGACAGTTTTTAAAGGAGTTTTAGGATTTGATAATGGGAAATCTGTTGCTGTCAAAAGATTGGACACTATGGTTGGAGAAAATGAGTTGGAATTCAAAGCTGAAGTGAGCCCAATTGATAGAACAAACCACGGAAATTCAGTCCAACTACTGGGGTTCTGCAATGAAGGGCAGCACCAAATCCTTGTCTACGAGTTTATGAAGAATGGTTCCCTATCAAGCTTCCTTTTTGGAGAGTCAAGGCCGAGATGGTACCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

248

Amino Acids

27.47

Weight (kDa)

9.13

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	152 - 237	7.4e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	152 - 236	1.4e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020403)

Species	Orthologous Gene IDs
malus_domestica	MD11G1024800.v1.1 MD11G1024900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0077611
rosa_laevigata	RLG00000001265
rosa_roxburghii	Rroxscaffold_1G00003770
rosa_rugosa	Rorug07G0280800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	732
AccB7I	CCANNNNNTGG	1 cut(s)	631
AccI	GTMKAC	2 cut(s)	67, 669
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	167, 259
AcsI	RAATTY	4 cut(s)	38, 138, 572, 616
AcuI	CTGAAG	2 cut(s)	246, 603
AfaI	GTAC	1 cut(s)	734
AfiI	CCNNNNNNNGG	1 cut(s)	631
AgsI	TTSAA	4 cut(s)	112, 377, 453, 577
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	5 cut(s)	185, 294, 430, 581, 702
AluI	AGCT	5 cut(s)	185, 294, 430, 581, 702
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	167, 259
Ama87I	CYCGRG	2 cut(s)	166, 295
AoxI	GGCC	2 cut(s)	17, 722
ApeKI	GCWGC	1 cut(s)	652
ApoI	RAATTY	4 cut(s)	38, 138, 572, 616
Asp718I	GGTACC	1 cut(s)	732
AsuHPI	GGTGA	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	166, 295
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	476, 593
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	1 cut(s)	723
BciT130I	CCWGG	1 cut(s)	21
BfaI	CTAG	1 cut(s)	464
BisI	GCNGC	1 cut(s)	653
BlpI	GCTNAGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	654
Bme1390I	CCNGG	1 cut(s)	21
BmeT110I	CYCGRG	2 cut(s)	166, 295
BmiI	GGNNCC	2 cut(s)	691, 734
BmrFI	CCNGG	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	641
BmuI	ACTGGG	1 cut(s)	641
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
Bpu1102I	GCTNAGC	1 cut(s)	79
Bpu14I	TTCGAA	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	2 cut(s)	45, 399
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	664
BshFI	GGCC	2 cut(s)	19, 724
BshNI	GGYRCC	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	2 cut(s)	166, 295
BslI	CCNNNNNNNGG	1 cut(s)	631
BsnI	GGCC	2 cut(s)	19, 724
BsoBI	CYCGRG	2 cut(s)	166, 295
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	3 cut(s)	285, 476, 593
Bsp143I	GATC	2 cut(s)	159, 264
Bsp1720I	GCTNAGC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	19, 724
BspCNI	CTCAG	2 cut(s)	46, 398
BspLI	GGNNCC	2 cut(s)	691, 734
BspPI	GGATC	2 cut(s)	167, 259
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	732
BsrDI	GCAATG	1 cut(s)	649
BsrI	ACTGG	1 cut(s)	636
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	2 cut(s)	159, 264
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	280, 487
Bst6I	CTCTTC	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	149
BstDEI	CTNAG	4 cut(s)	54, 79, 287, 385
BstDSI	CCRYGG	1 cut(s)	610
BstKTI	GATC	2 cut(s)	162, 267
BstMBI	GATC	2 cut(s)	159, 264
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	664
BsuRI	GGCC	2 cut(s)	19, 724
BtgI	CCRYGG	1 cut(s)	610
BtgZI	GCGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	733
CviAII	CATG	2 cut(s)	391, 400
CviQI	GTAC	1 cut(s)	733
DdeI	CTNAG	4 cut(s)	54, 79, 287, 385
DpnI	GATC	2 cut(s)	161, 266
DpnII	GATC	2 cut(s)	159, 264
DraI	TTTAAA	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco24I	GRGCYC	2 cut(s)	476, 593
Eco57I	CTGAAG	2 cut(s)	246, 603
Eco88I	CYCGRG	2 cut(s)	166, 295
EcoRI	GAATTC	2 cut(s)	138, 572
EcoRII	CCWGG	1 cut(s)	19
EcoT38I	GRGCYC	2 cut(s)	476, 593
FaeI	CATG	2 cut(s)	394, 403
FaiI	YATR	6 cut(s)	357, 392, 401, 407, 551, 680
FatI	CATG	2 cut(s)	390, 399
FblI	GTMKAC	2 cut(s)	67, 669
Fnu4HI	GCNGC	1 cut(s)	653
FriOI	GRGCYC	2 cut(s)	476, 593
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	1 cut(s)	653
HaeIII	GGCC	2 cut(s)	19, 724
Hin1II	CATG	2 cut(s)	394, 403
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	3 cut(s)	164, 373, 716
HpaI	GTTAAC	1 cut(s)	324
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	3 cut(s)	68, 324, 670
Hpy8I	GTNNAC	3 cut(s)	68, 324, 670
HpyAV	CCTTC	3 cut(s)	110, 196, 641
HpyCH4III	ACNGT	2 cut(s)	280, 487
HpyCH4V	TGCA	3 cut(s)	4, 11, 642
HpyF3I	CTNAG	4 cut(s)	54, 79, 287, 385
Hsp92II	CATG	2 cut(s)	394, 403
KpnI	GGTACC	1 cut(s)	736
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	159, 264
LmnI	GCTCC	2 cut(s)	288, 427
LpnPI	CCDG	6 cut(s)	6, 33, 237, 381, 455, 617
Lsp1109I	GCAGC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	161, 266
MboI	GATC	2 cut(s)	159, 264
MboII	GAAGA	4 cut(s)	145, 253, 256, 694
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	3 cut(s)	285, 476, 593
MluCI	AATT	7 cut(s)	28, 38, 73, 138, 572, 594, 616
MlyI	GAGTC	2 cut(s)	158, 725
MmeI	TCCRAC	3 cut(s)	535, 549, 649
MnlI	CCTC	6 cut(s)	28, 49, 113, 153, 278, 418
MseI	TTAA	2 cut(s)	323, 492
MslI	CAYNNNNRTG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	21
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	159, 264
NlaIII	CATG	2 cut(s)	394, 403
NlaIV	GGNNCC	2 cut(s)	691, 734
NspV	TTCGAA	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	631
PkrI	GCNGC	1 cut(s)	654
PleI	GAGTC	2 cut(s)	158, 724
PpsI	GAGTC	2 cut(s)	158, 724
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	691, 734
PspXI	VCTCGAGB	1 cut(s)	166
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	323, 492
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	2 cut(s)	159, 264
SchI	GAGTC	2 cut(s)	158, 725
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	3 cut(s)	285, 476, 593
Sfr274I	CTCGAG	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	7 cut(s)	28, 38, 73, 138, 572, 594, 616
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	280, 487
TaqI	TCGA	3 cut(s)	149, 162, 167
TasI	AATT	7 cut(s)	28, 38, 73, 138, 572, 594, 616
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	323, 492
Tru9I	TTAA	2 cut(s)	323, 492
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	1 cut(s)	652
TspDTI	ATGAA	6 cut(s)	129, 146, 416, 422, 660, 695
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	631
XapI	RAATTY	4 cut(s)	38, 138, 572, 616
XhoI	CTCGAG	1 cut(s)	166
XmiI	GTMKAC	2 cut(s)	67, 669
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.