Rorug07G0280800

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003716
Physical Location & Seq
Forward (+)
27193308 .. 27198637
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0280800.1

Sequence Viewer

Length: 843 bp
ATGGCATCTTCTGCAAAGACTCTCGTTGCTCCAGGTACATTAAATGGAGACTGGACAGTTGTTTCATCTCGTCGTGGAAGACAAAGAAGAAATCCTCCCATACTGAAAAGTCTTGTAGAGAAACAGCAACAACAACAAACTTGGGCTCCAACTGATATTGAAATCAATTTTGTTCGAGAATCAAAATTGATGCAGAAGATACAGATCTGTATGAAGAAATTGGAGCTTTCTCAATTCTATCTTACCTTGCTGGATCAAATGCAAACTCCAGAGATGATGAATTGCTTCCATAGAGTTTTGAGTTCCGAGTTGAAGATGAAGATGGTAATATACGGCATAGGCAGCATTGAATCATATGAATCCCCTCGATTGCAGTTGAGCCTCGCCATCTTGTTGAAAAGAAGGTTCAATTGGATTGGAGATATAGAGGTGTTTGATCCTATACTTTCTTCCACAGAATCTCGGGTTTTGGATGCTCTTGGTTGCTCTGTGTTATCTATTAATGAGCAAGGTCGGCGTGAGGTTAAAAAACCAACGATGTTTTTCATGCCACATTGTGAGGCTGAGTTATATGATAATCTTTTACAAGCGAATTGGGGAGTGCGGCAGTTGAATTGTATAGTATTGTTTGGGAATAGCTTTCAGACATATGAGCAGCATCTGTTAGAGTTCAAGAACTCGCCTATCATTCACTCCACCAACTATATCCTGGCTGTCCAAAGATTCACAAATGAATTTAGTATCGAGACAGTTTCAGATGATTATTTTGGTGCTTTTCATGATTCAAGTTGGCAATTTTTCAGCCCTGTCCTTGAAACAGAGCTGCAGTTGAGCAATTGCTGA

Protein Analysis

280

Amino Acids

32.38

Weight (kDa)

6.24

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRR1 PF07985 101 - 266 1.1e-41 SRR1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 604
AclWI GGATC 2 cut(s) 261, 431
AcsI RAATTY 1 cut(s) 734
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 9 cut(s) 161, 313, 350, 397, 409, 613, 673, 786, 815
AjnI CCWGG 2 cut(s) 31, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
AluBI AGCT 3 cut(s) 226, 639, 823
AluI AGCT 3 cut(s) 226, 639, 823
Alw26I GTCTC 2 cut(s) 42, 740
AlwI GGATC 2 cut(s) 261, 431
AlwNI CAGNNNCTG 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 462
ApeKI GCWGC 3 cut(s) 342, 655, 823
ApoI RAATTY 1 cut(s) 734
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 462
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 3 cut(s) 354, 667, 810
BccI CCATC 2 cut(s) 316, 395
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 2 cut(s) 33, 710
BcoDI GTCTC 2 cut(s) 42, 740
BfmI CTRYAG 1 cut(s) 824
BglII AGATCT 1 cut(s) 204
BisI GCNGC 4 cut(s) 343, 605, 656, 824
BlsI GCNGC 4 cut(s) 344, 606, 657, 825
Bme1390I CCNGG 2 cut(s) 33, 710
BmeT110I CYCGRG 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 33, 710
BmsI GCATC 4 cut(s) 14, 180, 463, 667
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 15, 252
BsaBI GATNNNNATC 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 2 cut(s) 33, 710
BseGI GGATG 1 cut(s) 478
BseJI GATNNNNATC 1 cut(s) 203
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 354, 667, 810
BsiHKCI CYCGRG 1 cut(s) 462
BsmAI GTCTC 2 cut(s) 42, 740
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 3 cut(s) 204, 253, 436
BspACI CCGC 1 cut(s) 604
BspCNI CTCAG 1 cut(s) 556
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 828
BspPI GGATC 2 cut(s) 261, 431
BsrI ACTGG 1 cut(s) 56
BssMI GATC 3 cut(s) 204, 253, 436
Bst2UI CCWGG 2 cut(s) 33, 710
Bst4CI ACNGT 2 cut(s) 58, 751
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 3 cut(s) 207, 256, 439
BstMAI GTCTC 2 cut(s) 42, 740
BstMBI GATC 3 cut(s) 204, 253, 436
BstMWI GCNNNNNNNGC 3 cut(s) 11, 342, 514
BstNI CCWGG 2 cut(s) 33, 710
BstSCI CCNGG 2 cut(s) 31, 708
BstSFI CTRYAG 1 cut(s) 824
BstV1I GCAGC 3 cut(s) 354, 667, 810
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BtsCI GGATG 1 cut(s) 478
CaiI CAGNNNCTG 1 cut(s) 661
CciI TCATGA 1 cut(s) 778
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 547, 779
CviJI RGCY 8 cut(s) 146, 226, 381, 563, 639, 713, 804, 823
CviKI_1 RGCY 8 cut(s) 146, 226, 381, 563, 639, 713, 804, 823
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 564
DpnI GATC 3 cut(s) 206, 255, 438
DpnII GATC 3 cut(s) 204, 253, 436
DraIII CACNNNGTG 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 462
EcoRII CCWGG 2 cut(s) 31, 708
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 2 cut(s) 550, 782
FatI CATG 2 cut(s) 546, 778
FauNDI CATATG 2 cut(s) 355, 649
Fnu4HI GCNGC 4 cut(s) 343, 605, 656, 824
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 343, 605, 656, 824
GluI GCNGC 4 cut(s) 343, 605, 656, 824
GsuI CTGGAG 2 cut(s) 15, 252
Hin1II CATG 2 cut(s) 550, 782
HinfI GANTC 7 cut(s) 19, 179, 350, 359, 458, 723, 782
Hpy188I TCNGA 3 cut(s) 307, 645, 757
Hpy188III TCNNGA 5 cut(s) 176, 269, 673, 745, 779
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 58, 751
HpyCH4V TGCA 5 cut(s) 14, 193, 262, 373, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 342, 514
HpyF3I CTNAG 1 cut(s) 564
Hsp92II CATG 2 cut(s) 550, 782
Kzo9I GATC 3 cut(s) 204, 253, 436
LmnI GCTCC 3 cut(s) 34, 151, 223
LpnPI CCDG 8 cut(s) 18, 37, 45, 236, 282, 695, 722, 819
Lsp1109I GCAGC 3 cut(s) 354, 667, 810
LweI GCATC 4 cut(s) 14, 180, 463, 667
MalI GATC 3 cut(s) 206, 255, 438
MboI GATC 3 cut(s) 204, 253, 436
MboII GAAGA 7 cut(s) 90, 99, 208, 226, 325, 331, 441
MfeI CAATTG 2 cut(s) 409, 835
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 148
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 6 cut(s) 105, 375, 392, 421, 514, 553
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 3 cut(s) 41, 501, 525
MspR9I CCNGG 2 cut(s) 33, 710
MunI CAATTG 2 cut(s) 409, 835
MvaI CCWGG 2 cut(s) 33, 710
MwoI GCNNNNNNNGC 3 cut(s) 11, 342, 514
NdeI CATATG 2 cut(s) 355, 649
NdeII GATC 3 cut(s) 204, 253, 436
NlaIII CATG 2 cut(s) 550, 782
NlaIV GGNNCC 1 cut(s) 147
PagI TCATGA 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 6 cut(s) 179, 350, 359, 458, 723, 782
PkrI GCNGC 4 cut(s) 344, 606, 657, 825
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 31, 708
PspGI CCWGG 2 cut(s) 31, 708
PspN4I GGNNCC 1 cut(s) 147
PstI CTGCAG 1 cut(s) 828
PstNI CAGNNNCTG 1 cut(s) 661
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 41, 501, 525
SatI GCNGC 4 cut(s) 343, 605, 656, 824
Sau3AI GATC 3 cut(s) 204, 253, 436
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 33, 710
SduI GDGCHC 1 cut(s) 148
SetI ASST 9 cut(s) 37, 228, 248, 407, 432, 514, 525, 641, 825
SfaNI GCATC 4 cut(s) 14, 180, 463, 667
SfcI CTRYAG 1 cut(s) 824
SsiI CCGC 1 cut(s) 604
StyD4I CCNGG 2 cut(s) 31, 708
TaaI ACNGT 2 cut(s) 58, 751
TaqI TCGA 3 cut(s) 175, 367, 744
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 6 cut(s) 179, 350, 359, 458, 723, 782
Tru1I TTAA 3 cut(s) 41, 501, 525
Tru9I TTAA 3 cut(s) 41, 501, 525
TseI GCWGC 3 cut(s) 342, 655, 823
TspDTI ATGAA 8 cut(s) 54, 227, 293, 332, 372, 535, 747, 767
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 1 cut(s) 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.