Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000029.1

Orthogroup ID

OG0003716

Physical Location & Seq

Genomic Coordinates Reverse (-)

166851 .. 170480

Gene Structure 3630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000029.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

atggacatagagtccaccaaactcgacgtggacgacgacgtgtcacccatcgaagaggtccgcttaacggtctcgaacgaagacgacccgacccttccagtatggaccttccggatgtggaccctagggatcctctcctgcgtcctcctctccttcctcaacaccttcttctcctaccgcaccgagcccctgatcatcaccatgatcaccgtacaggtggcgacactgcccatcggacggttcatggctagggtactgcccactaggaagttttcgatcgggtcgatggagttctcgctcaacccgggtccgtttaacaagaaggagcacgtgctgatatccatatttgccaatgccggatctgggttcggaagcggaacggcttatgctgttggcattgtcgatataattaaggcattttatcacaggaagatatcgttcttggccagttggcttcttgtcaataccacacaggcattggggtatgggtgggctggaattctccgaaagtacgtggtggatccgggagagatgtggtggccctctagtgtagttcaggtcaacttgttcgacttctcttggtatgttgtcccaggctaccttttcccaactatatcaaccatttcgtggatttgttggatataccccaagtcagtaacagtgcaacaaattgcatccggcatgcgtggacttggtgttggtgcattgtctctcgactggtctgttgtagcctcgtaccttcaaagccctttgattagccctttctttgccactgtcaatgttgcagttggctatgttgctttcatgtttgtcatactgccaattgcctactggggagtcaatttatacaatgccaagaacttcccaatcttctcttcccatttgtttgatgcccaaggtcaagtatataacacttcagcaattgtgaatgacaaatttcaaattgacatgccggcgtatgaaaaacaaggacgtgtaaacttaagtgtgttttttgctctgacatatggtattggctttgcggccattatatcaaccctcactcacgtggccctcttcaatggaagggagatatatgaacaatttcgagcatcgaagaaggatggaaaggtagacatacacaccaaattgatgaggaaatacaaggacatacctaactggtggtttcaccttactcttttggtgtcatttggaatcgctctggcactatgcattttcatgaaagatgagattccaatgccgtggtgggcactcattttcgctgcagtccttgcattaattttcactcttccgacgccgggactaaacattatcacagagtacatcatgggattgattttacccggaaaaccgattcttaatgtatgcttcaaaacctatggttatattagcatgagtcaggcaatttcctttctcaatgatttcaagcttggccattacatgaagattccgcccagatcaatgtttttagttcagttgataggaactattatagctggaacagtcaatatcggggttgcgtggtggctgttatctactgtggaaaacatatgtcaagatcaattactccctcctaatagtccttggacttgtcctggtgatcgcgtcttctttgatgcatctgtcgtttggggtcttgtcggtccaaagcggatatttggtcctcttggaaactaccaagcactcaactggttcttccttataggtgcatttggaccactcttggtatggttgttacacagagcttttcccagttataaatggattggacttatcaaccttccagtgcttttgaatgcaacagctgcaatgccaccggctacatcagtaaacttcaattgctggattgttattgcaactattttcggctactacatctttagatatagaacggcatggtggcagaggtacaattatgttctttcggctgccttagacgctggattggcttgcatggcggtgctcttatacttcacattaaccatgaacgggaagagcatatcttggtggggtgcggatggtgaacactgtgaattggcttcatgtcccacagccaaaggaatcgttgttgatggttgtcctgtcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

696

Amino Acids

78.0

Weight (kDa)

8.47

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09930
fragaria_vesca	FvH4_5g34010 FvH4_5g34011
malus_domestica	MD08G1206700.v1.1 MD15G1390200.v1.1 MD15G1390400.v1.1
prunus_persica	Prupe.1G539200_v2.0.a1 Prupe.1G539300_v2.0.a1
pyrus_communis	pycom15g34950 pycom15g34960
rosa_chinensis	RchiOBHm_Chr7g0233451 RchiOBHm_Chr7g0233471
rosa_laevigata	RLG00000001268 RLG00000001269
rosa_multiflora	Rmu_sc0000029.1_g000038 Rmu_sc0000029.1_g000051
rosa_roxburghii	Rroxscaffold_3G00227270 Rroxscaffold_3G00227290
rosa_rugosa	Rorug07G0280800 Rorug07G0280800
rosa_samantha	Rh7AG436600 Rh7AG436700 Rh7BG409700 Rh7BG409800 Rh7CG456500 Rh7CG456700 Rh7DG425800 Rh7DG425900
rosa_wichuraiana	Rw0G008530 Rw0G022500 Rw7G036000 Rw7G036010 Rw7G036030 Rw7G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1758
AccB7I	CCANNNNNTGG	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	1113
AccII	CGCG	1 cut(s)	1605
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	8 cut(s)	61, 178, 375, 1022, 1451, 1651, 1958, 2015
AclWI	GGATC	5 cut(s)	124, 137, 367, 515, 528
AcoI	YGGCCR	3 cut(s)	444, 1023, 1432
AcsI	RAATTY	2 cut(s)	498, 935
AcuI	CTGAAG	1 cut(s)	900
AcvI	CACGTG	2 cut(s)	331, 1048
AcyI	GRCGYC	1 cut(s)	1295
AfaI	GTAC	6 cut(s)	213, 255, 512, 737, 1322, 1910
AfiI	CCNNNNNNNGG	6 cut(s)	67, 237, 363, 627, 1298, 1989
AflII	CTTAAG	1 cut(s)	982
AflIII	ACRYGT	2 cut(s)	39, 973
AgsI	TTSAA	7 cut(s)	743, 941, 1060, 1372, 1426, 1795, 1837
AhdI	GACNNNNNGTC	2 cut(s)	10, 40
AjiI	CACGTC	3 cut(s)	28, 40, 974
AjnI	CCWGG	2 cut(s)	592, 1594
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AleI	CACNNNNGTG	1 cut(s)	1046
AluBI	AGCT	4 cut(s)	1429, 1496, 1745, 1805
AluI	AGCT	4 cut(s)	1429, 1496, 1745, 1805
Alw21I	GWGCWC	2 cut(s)	330, 1965
Alw26I	GTCTC	2 cut(s)	76, 714
AlwI	GGATC	5 cut(s)	124, 137, 367, 515, 528
Ama87I	CYCGRG	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	5 cut(s)	444, 539, 1023, 1050, 1432
ApeKI	GCWGC	3 cut(s)	1262, 1805, 1928
ApoI	RAATTY	2 cut(s)	498, 935
AseI	ATTAAT	1 cut(s)	1277
Asp700I	GAANNNNTTC	1 cut(s)	1083
AspA2I	CCTAGG	1 cut(s)	124
AspS9I	GGNCC	9 cut(s)	58, 105, 120, 308, 540, 1051, 1643, 1661, 1715
AsuC2I	CCSGG	5 cut(s)	305, 306, 525, 1299, 1344
AsuHPI	GGTGA	6 cut(s)	36, 190, 199, 1160, 1610, 2033
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	7 cut(s)	58, 105, 120, 308, 1643, 1661, 1715
AvrII	CCTAGG	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	1252
BalI	TGGCCA	2 cut(s)	446, 1434
BamHI	GGATCC	2 cut(s)	129, 520
BanII	GRGCYC	1 cut(s)	189
BbrPI	CACGTG	2 cut(s)	331, 1048
BbsI	GAAGAC	3 cut(s)	87, 1600, 2077
Bbv12I	GWGCWC	2 cut(s)	330, 1965
BbvI	GCAGC	3 cut(s)	1249, 1792, 1915
BccI	CCATC	6 cut(s)	56, 239, 280, 1097, 2012, 2066
BceAI	ACGGC	3 cut(s)	396, 1225, 1908
BciT130I	CCWGG	2 cut(s)	594, 1596
BclI	TGATCA	2 cut(s)	192, 204
BcnI	CCSGG	5 cut(s)	305, 306, 525, 1299, 1344
BcoDI	GTCTC	2 cut(s)	76, 714
BfaI	CTAG	4 cut(s)	125, 249, 264, 546
BfmI	CTRYAG	1 cut(s)	1263
BfrI	CTTAAG	1 cut(s)	982
BisI	GCNGC	4 cut(s)	1023, 1263, 1806, 1929
BlnI	CCTAGG	1 cut(s)	124
BlsI	GCNGC	4 cut(s)	1024, 1264, 1807, 1930
Bme1390I	CCNGG	7 cut(s)	305, 306, 525, 594, 1299, 1344, 1596
Bme18I	GGWCC	7 cut(s)	58, 105, 120, 308, 1643, 1661, 1715
BmeRI	GACNNNNNGTC	2 cut(s)	10, 40
BmeT110I	CYCGRG	1 cut(s)	304
BmgBI	CACGTC	3 cut(s)	28, 40, 974
BmgT120I	GGNCC	9 cut(s)	58, 105, 120, 308, 540, 1051, 1643, 1661, 1715
BmiI	GGNNCC	4 cut(s)	122, 131, 309, 522
BmrFI	CCNGG	7 cut(s)	305, 306, 525, 594, 1299, 1344, 1596
BmrI	ACTGGG	2 cut(s)	841, 1746
BmsI	GCATC	5 cut(s)	683, 880, 1100, 1606, 1628
BmuI	ACTGGG	2 cut(s)	841, 1746
BpiI	GAAGAC	3 cut(s)	87, 1600, 2077
BpuMI	CCSGG	5 cut(s)	305, 306, 525, 1299, 1344
BsaAI	YACGTR	3 cut(s)	331, 514, 1048
BsaHI	GRCGYC	1 cut(s)	1295
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	6 cut(s)	124, 304, 592, 895, 1241, 1583
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 237, 363, 627, 1298, 1989
Bse118I	RCCGGY	2 cut(s)	952, 1816
Bse1I	ACTGG	8 cut(s)	98, 447, 722, 836, 1163, 1694, 1752, 1784
Bse3DI	GCAATG	1 cut(s)	1815
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	594, 1596
BseDI	CCNNGG	6 cut(s)	124, 304, 592, 895, 1241, 1583
BseGI	GGATG	4 cut(s)	120, 674, 1108, 2023
BseLI	CCNNNNNNNGG	6 cut(s)	67, 237, 363, 627, 1298, 1989
BseMI	GCAATG	1 cut(s)	1815
BseNI	ACTGG	8 cut(s)	98, 447, 722, 836, 1163, 1694, 1752, 1784
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	1252
BseXI	GCAGC	3 cut(s)	1249, 1792, 1915
Bsh1236I	CGCG	1 cut(s)	1605
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	5 cut(s)	446, 541, 1025, 1052, 1434
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	330, 1965
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	9 cut(s)	112, 305, 357, 524, 678, 953, 1298, 1344, 1817
BslFI	GGGAC	3 cut(s)	575, 1314, 2031
BslI	CCNNNNNNNGG	6 cut(s)	67, 237, 363, 627, 1298, 1989
BsmAI	GTCTC	2 cut(s)	76, 714
BsmFI	GGGAC	3 cut(s)	575, 1314, 2031
BsmI	GAATGC	1 cut(s)	1801
BsnI	GGCC	5 cut(s)	446, 541, 1025, 1052, 1434
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	304
Bsp1286I	GDGCHC	4 cut(s)	189, 330, 1252, 1965
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	9 cut(s)	129, 192, 204, 276, 359, 520, 1457, 1558, 1600
BspACI	CCGC	8 cut(s)	61, 178, 375, 1022, 1451, 1651, 1958, 2015
BspANI	GGCC	5 cut(s)	446, 541, 1025, 1052, 1434
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	1605
BspHI	TCATGA	1 cut(s)	1218
BspLI	GGNNCC	4 cut(s)	122, 131, 309, 522
BspMAI	CTGCAG	1 cut(s)	1267
BspPI	GGATC	5 cut(s)	124, 137, 367, 515, 528
BspQI	GCTCTTC	1 cut(s)	1988
BspTI	CTTAAG	1 cut(s)	982
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	1815
BsrFI	RCCGGY	2 cut(s)	952, 1816
BsrI	ACTGG	8 cut(s)	98, 447, 722, 836, 1163, 1694, 1752, 1784
BssAI	RCCGGY	2 cut(s)	952, 1816
BssECI	CCNNGG	6 cut(s)	124, 304, 592, 895, 1241, 1583
BssMI	GATC	9 cut(s)	129, 192, 204, 276, 359, 520, 1457, 1558, 1600
BssNI	GRCGYC	1 cut(s)	1295
BssT1I	CCWWGG	3 cut(s)	124, 895, 1583
Bst2UI	CCWGG	2 cut(s)	594, 1596
Bst4CI	ACNGT	8 cut(s)	70, 211, 240, 661, 775, 1504, 1540, 2030
Bst6I	CTCTTC	5 cut(s)	48, 880, 1061, 1293, 1988
BstACI	GRCGYC	1 cut(s)	1295
BstAFI	CTTAAG	1 cut(s)	982
BstAPI	GCANNNNNTGC	2 cut(s)	1271, 1805
BstBAI	YACGTR	3 cut(s)	331, 514, 1048
BstC8I	GCNNGC	3 cut(s)	683, 954, 1951
BstDEI	CTNAG	1 cut(s)	1933
BstDSI	CCRYGG	1 cut(s)	1241
BstF5I	GGATG	4 cut(s)	120, 674, 1108, 2023
BstFNI	CGCG	1 cut(s)	1605
BstKTI	GATC	9 cut(s)	132, 195, 207, 279, 362, 523, 1460, 1561, 1603
BstMAI	GTCTC	2 cut(s)	76, 714
BstMBI	GATC	9 cut(s)	129, 192, 204, 276, 359, 520, 1457, 1558, 1600
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	5 cut(s)	1271, 1805, 1937, 1946, 1955
BstNI	CCWGG	2 cut(s)	594, 1596
BstNSI	RCATGY	2 cut(s)	685, 952
BstSCI	CCNGG	7 cut(s)	303, 304, 523, 592, 1297, 1342, 1594
BstSFI	CTRYAG	1 cut(s)	1263
BstSLI	GKGCMC	1 cut(s)	1252
BstUI	CGCG	1 cut(s)	1605
BstV1I	GCAGC	3 cut(s)	1249, 1792, 1915
BstV2I	GAAGAC	3 cut(s)	87, 1600, 2077
BstX2I	RGATCY	3 cut(s)	129, 359, 520
BstXI	CCANNNNNNTGG	1 cut(s)	1242
BstYI	RGATCY	3 cut(s)	129, 359, 520
BsuRI	GGCC	5 cut(s)	446, 541, 1025, 1052, 1434
BtgI	CCRYGG	1 cut(s)	1241
BtrI	CACGTC	3 cut(s)	28, 40, 974
BtsCI	GGATG	4 cut(s)	120, 674, 1108, 2023
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	5 cut(s)	224, 666, 771, 1791, 2026
Cac8I	GCNNGC	3 cut(s)	683, 954, 1951
CciI	TCATGA	1 cut(s)	1218
Cfr10I	RCCGGY	2 cut(s)	952, 1816
Cfr13I	GGNCC	9 cut(s)	58, 105, 120, 308, 540, 1051, 1643, 1661, 1715
Cfr9I	CCCGGG	1 cut(s)	304
CseI	GACGC	4 cut(s)	130, 1303, 1594, 1946
Csp6I	GTAC	6 cut(s)	212, 254, 511, 736, 1321, 1909
CviQI	GTAC	6 cut(s)	212, 254, 511, 736, 1321, 1909
DdeI	CTNAG	1 cut(s)	1933
DpnI	GATC	9 cut(s)	131, 194, 206, 278, 361, 522, 1459, 1560, 1602
DpnII	GATC	9 cut(s)	129, 192, 204, 276, 359, 520, 1457, 1558, 1600
DriI	GACNNNNNGTC	2 cut(s)	10, 40
EaeI	YGGCCR	3 cut(s)	444, 1023, 1432
Eam1104I	CTCTTC	5 cut(s)	48, 880, 1061, 1293, 1988
Eam1105I	GACNNNNNGTC	2 cut(s)	10, 40
EarI	CTCTTC	5 cut(s)	48, 880, 1061, 1293, 1988
EciI	GGCGGA	1 cut(s)	1440
Eco130I	CCWWGG	3 cut(s)	124, 895, 1583
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	76
Eco32I	GATATC	2 cut(s)	339, 435
Eco47I	GGWCC	7 cut(s)	58, 105, 120, 308, 1643, 1661, 1715
Eco57I	CTGAAG	1 cut(s)	900
Eco72I	CACGTG	2 cut(s)	331, 1048
Eco88I	CYCGRG	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	592, 1594
EcoRV	GATATC	2 cut(s)	339, 435
EcoT14I	CCWWGG	3 cut(s)	124, 895, 1583
EcoT22I	ATGCAT	2 cut(s)	1214, 1621
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	124, 895, 1583
FaqI	GGGAC	3 cut(s)	575, 1314, 2031
FauNDI	CATATG	2 cut(s)	1006, 1550
FbaI	TGATCA	2 cut(s)	192, 204
FblI	GTMKAC	1 cut(s)	1113
Fnu4HI	GCNGC	4 cut(s)	1023, 1263, 1806, 1929
FokI	GGATG	4 cut(s)	127, 661, 1115, 2030
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	1023, 1263, 1806, 1929
FspBI	CTAG	4 cut(s)	125, 249, 264, 546
GluI	GCNGC	4 cut(s)	1023, 1263, 1806, 1929
HaeIII	GGCC	5 cut(s)	446, 541, 1025, 1052, 1434
HapII	CCGG	9 cut(s)	112, 305, 357, 524, 678, 953, 1298, 1344, 1817
HgaI	GACGC	4 cut(s)	130, 1303, 1594, 1946
Hin1I	GRCGYC	1 cut(s)	1295
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	1427
HinfI	GANTC	8 cut(s)	11, 837, 1194, 1231, 1354, 1396, 1447, 2061
HpaII	CCGG	9 cut(s)	112, 305, 357, 524, 678, 953, 1298, 1344, 1817
HphI	GGTGA	6 cut(s)	36, 190, 199, 1160, 1610, 2033
Hpy166II	GTNNAC	9 cut(s)	15, 31, 120, 562, 689, 979, 1114, 1831, 2024
Hpy188I	TCNGA	5 cut(s)	236, 371, 506, 1002, 1293
Hpy188III	TCNNGA	5 cut(s)	73, 112, 713, 1219, 1556
Hpy8I	GTNNAC	9 cut(s)	15, 31, 120, 562, 689, 979, 1114, 1831, 2024
Hpy99I	CGWCG	4 cut(s)	29, 38, 41, 1297
HpyAV	CCTTC	9 cut(s)	104, 118, 163, 175, 316, 749, 1059, 1093, 1790
HpyCH4III	ACNGT	8 cut(s)	70, 211, 240, 661, 775, 1504, 1540, 2030
HpyCH4IV	ACGT	6 cut(s)	27, 39, 330, 513, 973, 1047
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1271, 1805, 1937, 1946, 1955
HpyF3I	CTNAG	1 cut(s)	1933
HpySE526I	ACGT	6 cut(s)	27, 39, 330, 513, 973, 1047
Hsp92I	GRCGYC	1 cut(s)	1295
Kpn2I	TCCGGA	1 cut(s)	111
KroI	GCCGGC	1 cut(s)	952
KroNI	GCCGGC	1 cut(s)	954
Ksp22I	TGATCA	2 cut(s)	192, 204
Kzo9I	GATC	9 cut(s)	129, 192, 204, 276, 359, 520, 1457, 1558, 1600
LguI	GCTCTTC	1 cut(s)	1988
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	3 cut(s)	1249, 1792, 1915
LweI	GCATC	5 cut(s)	683, 880, 1100, 1606, 1628
MaeI	CTAG	4 cut(s)	125, 249, 264, 546
MaeII	ACGT	6 cut(s)	27, 39, 330, 513, 973, 1047
MaeIII	GTNAC	3 cut(s)	42, 655, 1734
MalI	GATC	9 cut(s)	131, 194, 206, 278, 361, 522, 1459, 1560, 1602
MboI	GATC	9 cut(s)	129, 192, 204, 276, 359, 520, 1457, 1558, 1600
MfeI	CAATTG	3 cut(s)	822, 921, 1837
MflI	RGATCY	3 cut(s)	129, 359, 520
MhlI	GDGCHC	4 cut(s)	189, 330, 1252, 1965
MlsI	TGGCCA	2 cut(s)	446, 1434
MluNI	TGGCCA	2 cut(s)	446, 1434
MlyI	GAGTC	3 cut(s)	20, 846, 1405
MmeI	TCCRAC	2 cut(s)	617, 1316
Mox20I	TGGCCA	2 cut(s)	446, 1434
Mph1103I	ATGCAT	2 cut(s)	1214, 1621
MroI	TCCGGA	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	952
MroXI	GAANNNNTTC	1 cut(s)	1083
MscI	TGGCCA	2 cut(s)	446, 1434
MseI	TTAA	7 cut(s)	65, 315, 411, 983, 1277, 1359, 1979
MslI	CAYNNNNRTG	4 cut(s)	200, 1046, 1217, 1958
Msp20I	TGGCCA	2 cut(s)	446, 1434
MspA1I	CMGCKG	1 cut(s)	1805
MspCI	CTTAAG	1 cut(s)	982
MspI	CCGG	9 cut(s)	112, 305, 357, 524, 678, 953, 1298, 1344, 1817
MspR9I	CCNGG	7 cut(s)	305, 306, 525, 594, 1299, 1344, 1596
MunI	CAATTG	3 cut(s)	822, 921, 1837
Mva1269I	GAATGC	1 cut(s)	1801
MvaI	CCWGG	2 cut(s)	594, 1596
MvnI	CGCG	1 cut(s)	1605
MwoI	GCNNNNNNNGC	5 cut(s)	1271, 1805, 1937, 1946, 1955
NaeI	GCCGGC	1 cut(s)	954
NciI	CCSGG	5 cut(s)	305, 306, 525, 1299, 1344
NdeI	CATATG	2 cut(s)	1006, 1550
NdeII	GATC	9 cut(s)	129, 192, 204, 276, 359, 520, 1457, 1558, 1600
NgoMIV	GCCGGC	1 cut(s)	952
NlaIV	GGNNCC	4 cut(s)	122, 131, 309, 522
NmuCI	GTSAC	1 cut(s)	42
NsiI	ATGCAT	2 cut(s)	1214, 1621
NspI	RCATGY	2 cut(s)	685, 952
OliI	CACNNNNGTG	1 cut(s)	1046
PaeI	GCATGC	1 cut(s)	685
PagI	TCATGA	1 cut(s)	1218
PciSI	GCTCTTC	1 cut(s)	1988
PcsI	WCGNNNNNNNCGW	3 cut(s)	30, 33, 281
PctI	GAATGC	1 cut(s)	1801
PdiI	GCCGGC	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	1083
PfeI	GAWTC	5 cut(s)	1194, 1231, 1354, 1447, 2061
PflMI	CCANNNNNTGG	1 cut(s)	627
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	1024, 1264, 1807, 1930
Ple19I	CGATCG	1 cut(s)	279
PleI	GAGTC	3 cut(s)	19, 845, 1404
PmaCI	CACGTG	2 cut(s)	331, 1048
PmlI	CACGTG	2 cut(s)	331, 1048
PpsI	GAGTC	3 cut(s)	19, 845, 1404
Ppu21I	YACGTR	3 cut(s)	331, 514, 1048
PshBI	ATTAAT	1 cut(s)	1277
PsiI	TTATAA	1 cut(s)	1758
Psp6I	CCWGG	2 cut(s)	592, 1594
PspCI	CACGTG	2 cut(s)	331, 1048
PspGI	CCWGG	2 cut(s)	592, 1594
PspN4I	GGNNCC	4 cut(s)	122, 131, 309, 522
PspPI	GGNCC	9 cut(s)	58, 105, 120, 308, 540, 1051, 1643, 1661, 1715
PstI	CTGCAG	1 cut(s)	1267
PsuI	RGATCY	3 cut(s)	129, 359, 520
PvuI	CGATCG	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	1805
RsaI	GTAC	6 cut(s)	213, 255, 512, 737, 1322, 1910
RsaNI	GTAC	6 cut(s)	212, 254, 511, 736, 1321, 1909
RseI	CAYNNNNRTG	4 cut(s)	200, 1046, 1217, 1958
SapI	GCTCTTC	1 cut(s)	1988
SaqAI	TTAA	7 cut(s)	65, 315, 411, 983, 1277, 1359, 1979
SatI	GCNGC	4 cut(s)	1023, 1263, 1806, 1929
Sau3AI	GATC	9 cut(s)	129, 192, 204, 276, 359, 520, 1457, 1558, 1600
Sau96I	GGNCC	9 cut(s)	58, 105, 120, 308, 540, 1051, 1643, 1661, 1715
SchI	GAGTC	3 cut(s)	20, 846, 1405
ScrFI	CCNGG	7 cut(s)	305, 306, 525, 594, 1299, 1344, 1596
SduI	GDGCHC	4 cut(s)	189, 330, 1252, 1965
SfaNI	GCATC	5 cut(s)	683, 880, 1100, 1606, 1628
SfcI	CTRYAG	1 cut(s)	1263
SinI	GGWCC	7 cut(s)	58, 105, 120, 308, 1643, 1661, 1715
SmaI	CCCGGG	1 cut(s)	306
SmiMI	CAYNNNNRTG	4 cut(s)	200, 1046, 1217, 1958
SmlI	CTYRAG	1 cut(s)	982
SmoI	CTYRAG	1 cut(s)	982
SphI	GCATGC	1 cut(s)	685
SsiI	CCGC	8 cut(s)	61, 178, 375, 1022, 1451, 1651, 1958, 2015
SspMI	CTAG	4 cut(s)	125, 249, 264, 546
StyD4I	CCNGG	7 cut(s)	303, 304, 523, 592, 1297, 1342, 1594
StyI	CCWWGG	3 cut(s)	124, 895, 1583
TaaI	ACNGT	8 cut(s)	70, 211, 240, 661, 775, 1504, 1540, 2030
TaiI	ACGT	6 cut(s)	30, 42, 333, 516, 976, 1050
TaqII	GACCGA	1 cut(s)	1631
TatI	WGTACW	1 cut(s)	1320
TauI	GCSGC	1 cut(s)	1025
TfiI	GAWTC	5 cut(s)	1194, 1231, 1354, 1447, 2061
Tru1I	TTAA	7 cut(s)	65, 315, 411, 983, 1277, 1359, 1979
Tru9I	TTAA	7 cut(s)	65, 315, 411, 983, 1277, 1359, 1979
TscAI	CASTG	5 cut(s)	231, 666, 778, 1791, 2033
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	3 cut(s)	1262, 1805, 1928
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	9 cut(s)	232, 793, 975, 1092, 1207, 1235, 1457, 2000, 2031
TspGWI	ACGGA	1 cut(s)	300
TspMI	CCCGGG	1 cut(s)	304
TspRI	CASTG	5 cut(s)	231, 666, 778, 1791, 2033
Van91I	CCANNNNNTGG	1 cut(s)	627
Vha464I	CTTAAG	1 cut(s)	982
VpaK11BI	GGWCC	7 cut(s)	58, 105, 120, 308, 1643, 1661, 1715
VspI	ATTAAT	1 cut(s)	1277
XapI	RAATTY	2 cut(s)	498, 935
XceI	RCATGY	2 cut(s)	685, 952
XcmI	CCANNNNNNNNNTGG	5 cut(s)	25, 475, 828, 1242, 1725
XmaI	CCCGGG	1 cut(s)	304
XmaJI	CCTAGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	1113
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	4 cut(s)	125, 249, 264, 546
Zsp2I	ATGCAT	2 cut(s)	1214, 1621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.