Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003716

Physical Location & Seq

Genomic Coordinates Reverse (-)

48458745 .. 48468627

Gene Structure 9883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1390200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGTCCACCACTCTTGAGATAGAGCCGGCCACAAAACACGACGAAAACGACGTTTCTCCGGTCGAAGAAGTCCGTTTAACTGTCTCAAACGACGACGATCCCACCCTTCCAGTATGGACCTTCCGAATGTGGACGCTAGGCCTCGCCTCCTGCGCCCTCCTCTCATTCCTCAACACTTTCTTCTCCTACCGCACGGAGCCCCTCATCATCTCGATGATATCCGTACAGGTGGCGACGCTCCCCATCGGACGATTCATGGCGAGGGTGCTGCCGAAGCGGAAGTTTCAGATAGGGTTGAAGGAGTTCTCGCTGAACCCTGGTCCGTTTAACATGAAGGAGCACGTGCTGATATCCATATTTGCCAATGCTGGCTCCGGATTCGGAAGTGGAACGGCTTATGCGATTAGCATTGTGGATATAATAAAAGCGTTTTATCATAGAAAGATCTCGTTCTTGGCCAGTTGGATACTTGTTATAACCACGCAGGTATTAGGGTATGGGTGGGCTGGTATTCTCAGAAGGTACGTGGTGGATCCGGCGGAGATGTGGTGGCCGAGTAGTCTCGTTCAAGTCTCCTTGTTCAGGGCTCTACATGAGAAAGACAACAATCGAATGTCAAGAGGGAAGTTCTTTTTTATAGCACTCGTATGCAGCTTCGCTTGGTTTGTCGTCCCCGGCTATCTTTTCCCAACCTTGTCAACAATTTCATGGGTTTGTTGGATATACCCTAAGTCAGTCACTGCCCAACAAATAGGGTCAGGCATGGGAGGACTTGGCATTGGAGCCTTTTCACTTGATTGGACAGTCATAGCCTCCTACCTCTACAGCCCTCTCATCAGCCCTTTCTTTGCCATTGTCAATGTTGCTGCTGGCTATGTTCTTGTTATGTACATGTTACTGCCAATTGCCTATTGGGGTGTCAATTTGTACAATGCCAAGAACTTTGCAATCTTCTCTTCACATTTGTTTGACGCCGGTGGCCAAATATATAATGTCTCCGCCCTTGTGAATAACAAGTTTGAGATTGACATGCCTGCCTATGAAAGACAAGGACGCATAAACTTGAGTGTGTTCTTTTCTTTGACATATGGCATCGGTTTTGCGTCTGTTGTCTCGACCCTCACGCACGTTGCCCTATTCAACGGAAGAGAGATATATAAACAATACCGAAGGGCATCACAGAGTGTAAAGGTGGACATACACACCAGATTAATGAGGAAATACAAGGACATACCTAACTGGTGGTTTCATCTTATGCTTTTGGTGTCCCTGGTACTCTCTCTAGTGATGTGCATATTCATGAAAGATCAAGTCCAAATGCCATGGTGGGGACTTATTTTTGCAGCTGGACTTGCATTAGTTTTCACTCTTCCTATAAGCATTATAACTGCCACAACAAATCAGTCTCCAGGACTAAACATCATCACAGAATACATTATGGGATTGATATTACCTGGCAAGCCAATAGCCAATGTGTGTTTCAAAACATATGGATATATAAGCATGTCGCAGGCAATTTCCTTTCTCAATGATTTTAAGCTAGGTCATTACATGAAGATCCCACCTATATCCATGTTCATAGTCCAGTGCATAGGAACAATAATAGCTGGAACAGTCAATATAGGAGTTGCATGGTGGCTGCTGTCTAGCATTGAAAACATATGTCAAGATCAATTACTCCCTCCCAACAGTCCTTGGACTTGTCCTGGGGACCGTGTCTTCTTTGATGCATCTGTGATTTGGGGCCTTGTCGGACCAAAACGAATCTTTGGCTCTCTCGGAAACTACAAAGCACTCAACTGGTTTTTCCTCATAGGTGCATTGGGACCTCTATTGGTCTGGTTGCTGCACAAAGCTTTCCCAAGTCAAAAGTGGATCAAACTGATCAACCTCCCAGTACTTTTGGGAGCAACAGCTGCAATGCCACCAGCTACAACTGTGAACTTCAATTGCTGGATTGTGGTTGGAACTATTTTCAACTACTTTGTTTTCAGGTACAGAAAGCAGTGGTGGCAGAGGTACAATTACGTTCTTTCTGCTGCCCTAGATGCTGGAGTGGCTTTCATGGGGGTACTTTTGTACTTTTCTTTGACCACTTACGAGAAGAGCATATCCTGGTGGGGAACAAATGGTGAACACTGTGATTTGGCTACATGCCCCACAGCCAAAGGTATAGTTGTTGATGGTTGCCCTGTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

734

Amino Acids

82.35

Weight (kDa)

9.13

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	38 - 696	2.7e-188	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09930
fragaria_vesca	FvH4_5g34010 FvH4_5g34011
malus_domestica	MD08G1206700.v1.1 MD15G1390200.v1.1 MD15G1390400.v1.1
prunus_persica	Prupe.1G539200_v2.0.a1 Prupe.1G539300_v2.0.a1
pyrus_communis	pycom15g34950 pycom15g34960
rosa_chinensis	RchiOBHm_Chr7g0233451 RchiOBHm_Chr7g0233471
rosa_laevigata	RLG00000001268 RLG00000001269
rosa_multiflora	Rmu_sc0000029.1_g000038 Rmu_sc0000029.1_g000051
rosa_roxburghii	Rroxscaffold_3G00227270 Rroxscaffold_3G00227290
rosa_rugosa	Rorug07G0280800 Rorug07G0280800
rosa_samantha	Rh7AG436600 Rh7AG436700 Rh7BG409700 Rh7BG409800 Rh7CG456500 Rh7CG456700 Rh7DG425800 Rh7DG425900
rosa_wichuraiana	Rw0G008530 Rw0G022500 Rw7G036000 Rw7G036010 Rw7G036030 Rw7G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	476, 1385
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	2196
AccIII	TCCGGA	1 cut(s)	374
AciI	CCGC	4 cut(s)	190, 277, 539, 999
AclWI	GGATC	5 cut(s)	92, 527, 540, 1552, 1883
AcoI	YGGCCR	4 cut(s)	27, 456, 551, 979
AcvI	CACGTG	1 cut(s)	343
AcyI	GRCGYC	1 cut(s)	972
AdeI	CACNNNGTG	1 cut(s)	1184
AfiI	CCNNNNNNNGG	2 cut(s)	582, 1328
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	7 cut(s)	298, 569, 1141, 1483, 1655, 1948, 1978
AjnI	CCWGG	6 cut(s)	316, 1269, 1408, 1453, 1705, 2114
AjuI	GAANNNNNNNTTGG	2 cut(s)	1463, 1495
AluBI	AGCT	7 cut(s)	654, 1346, 1540, 1607, 1856, 1916, 1931
AluI	AGCT	7 cut(s)	654, 1346, 1540, 1607, 1856, 1916, 1931
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	6 cut(s)	88, 566, 577, 1000, 1117, 1410
AlwI	GGATC	5 cut(s)	92, 527, 540, 1552, 1883
AlwNI	CAGNNNCTG	1 cut(s)	740
Aor13HI	TCCGGA	1 cut(s)	374
AoxI	GGCC	6 cut(s)	27, 139, 456, 551, 979, 1744
ApeKI	GCWGC	8 cut(s)	268, 651, 866, 1343, 1639, 1846, 1916, 2039
AseI	ATTAAT	1 cut(s)	1211
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	6 cut(s)	117, 320, 1711, 1744, 1754, 1826
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	1 cut(s)	2144
AvaII	GGWCC	5 cut(s)	117, 320, 1711, 1754, 1826
BaeI	ACNNNNGTAYC	2 cut(s)	2063, 2096
BalI	TGGCCA	2 cut(s)	458, 981
BamHI	GGATCC	1 cut(s)	532
BanII	GRGCYC	2 cut(s)	201, 589
BbrPI	CACGTG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	1711
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	8 cut(s)	255, 663, 853, 1355, 1626, 1833, 1903, 2026
BccI	CCATC	2 cut(s)	251, 2177
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	6 cut(s)	318, 1271, 1410, 1455, 1707, 2116
BciVI	GTATCC	1 cut(s)	459
BclI	TGATCA	1 cut(s)	1884
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	6 cut(s)	88, 566, 577, 1000, 1117, 1410
BfaI	CTAG	5 cut(s)	137, 1283, 1541, 1647, 2045
BfmI	CTRYAG	1 cut(s)	823
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	459
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	8 cut(s)	269, 652, 867, 1344, 1640, 1847, 1917, 2040
BlsI	GCNGC	8 cut(s)	270, 653, 868, 1345, 1641, 1848, 1918, 2041
BmcAI	AGTACT	1 cut(s)	1899
Bme1390I	CCNGG	7 cut(s)	318, 675, 1271, 1410, 1455, 1707, 2116
Bme18I	GGWCC	5 cut(s)	117, 320, 1711, 1754, 1826
BmgT120I	GGNCC	6 cut(s)	117, 320, 1711, 1744, 1754, 1826
BmiI	GGNNCC	7 cut(s)	198, 373, 534, 784, 1712, 1745, 1827
BmrFI	CCNGG	7 cut(s)	318, 675, 1271, 1410, 1455, 1707, 2116
BmrI	ACTGGG	1 cut(s)	1889
BmsI	GCATC	5 cut(s)	1101, 1184, 1717, 1739, 2038
BmuI	ACTGGG	1 cut(s)	1889
BpiI	GAAGAC	1 cut(s)	1711
BpmI	CTGGAG	2 cut(s)	1392, 2073
BpuEI	CTTGAG	2 cut(s)	35, 1084
BpuMI	CCSGG	1 cut(s)	675
BsaAI	YACGTR	2 cut(s)	343, 526
BsaHI	GRCGYC	1 cut(s)	972
BsaJI	CCNNGG	6 cut(s)	316, 673, 1269, 1322, 1694, 1706
BsaWI	WCCGGW	2 cut(s)	58, 374
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	582, 1328
Bse118I	RCCGGY	2 cut(s)	25, 974
Bse1I	ACTGG	6 cut(s)	110, 459, 1244, 1585, 1805, 1895
Bse3DI	GCAATG	1 cut(s)	1926
BseAI	TCCGGA	1 cut(s)	374
BseBI	CCWGG	6 cut(s)	318, 1271, 1410, 1455, 1707, 2116
BseDI	CCNNGG	6 cut(s)	316, 673, 1269, 1322, 1694, 1706
BseLI	CCNNNNNNNGG	2 cut(s)	582, 1328
BseMI	GCAATG	1 cut(s)	1926
BseMII	CTCAG	1 cut(s)	529
BseNI	ACTGG	6 cut(s)	110, 459, 1244, 1585, 1805, 1895
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	8 cut(s)	255, 663, 853, 1355, 1626, 1833, 1903, 2026
BsgI	GTGCAG	1 cut(s)	1832
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	6 cut(s)	29, 141, 458, 553, 981, 1746
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	6 cut(s)	26, 59, 375, 536, 675, 975
BslFI	GGGAC	5 cut(s)	656, 1252, 1344, 1724, 1839
BslI	CCNNNNNNNGG	2 cut(s)	582, 1328
BsmAI	GTCTC	6 cut(s)	88, 566, 577, 1000, 1117, 1410
BsmFI	GGGAC	5 cut(s)	656, 1252, 1344, 1724, 1839
BsnI	GGCC	6 cut(s)	29, 141, 458, 553, 981, 1746
Bsp1286I	GDGCHC	3 cut(s)	201, 342, 589
Bsp13I	TCCGGA	1 cut(s)	374
Bsp1407I	TGTACA	2 cut(s)	888, 927
Bsp143I	GATC	8 cut(s)	97, 444, 532, 1306, 1557, 1669, 1875, 1884
Bsp19I	CCATGG	1 cut(s)	1322
BspACI	CCGC	4 cut(s)	190, 277, 539, 999
BspANI	GGCC	6 cut(s)	29, 141, 458, 553, 981, 1746
BspCNI	CTCAG	1 cut(s)	528
BspEI	TCCGGA	1 cut(s)	374
BspHI	TCATGA	1 cut(s)	1299
BspLI	GGNNCC	7 cut(s)	198, 373, 534, 784, 1712, 1745, 1827
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	5 cut(s)	92, 527, 540, 1552, 1883
BspQI	GCTCTTC	1 cut(s)	2099
BsrDI	GCAATG	1 cut(s)	1926
BsrFI	RCCGGY	2 cut(s)	25, 974
BsrGI	TGTACA	2 cut(s)	888, 927
BsrI	ACTGG	6 cut(s)	110, 459, 1244, 1585, 1805, 1895
BssAI	RCCGGY	2 cut(s)	25, 974
BssECI	CCNNGG	6 cut(s)	316, 673, 1269, 1322, 1694, 1706
BssMI	GATC	8 cut(s)	97, 444, 532, 1306, 1557, 1669, 1875, 1884
BssNI	GRCGYC	1 cut(s)	972
BssT1I	CCWWGG	2 cut(s)	1322, 1694
Bst2UI	CCWGG	6 cut(s)	318, 1271, 1410, 1455, 1707, 2116
Bst4CI	ACNGT	7 cut(s)	82, 805, 1615, 1691, 1715, 1939, 2141
Bst6I	CTCTTC	4 cut(s)	961, 1141, 1374, 2099
BstACI	GRCGYC	1 cut(s)	972
BstAPI	GCANNNNNTGC	1 cut(s)	1916
BstAUI	TGTACA	2 cut(s)	888, 927
BstBAI	YACGTR	2 cut(s)	343, 526
BstC8I	GCNNGC	6 cut(s)	27, 370, 871, 1035, 1460, 1512
BstDEI	CTNAG	2 cut(s)	515, 729
BstDSI	CCRYGG	1 cut(s)	1322
BstENI	CCTNNNNNAGG	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	8 cut(s)	100, 447, 535, 1309, 1560, 1672, 1878, 1887
BstMAI	GTCTC	6 cut(s)	88, 566, 577, 1000, 1117, 1410
BstMBI	GATC	8 cut(s)	97, 444, 532, 1306, 1557, 1669, 1875, 1884
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	7 cut(s)	152, 274, 1352, 1916, 2011, 2048, 2057
BstNI	CCWGG	6 cut(s)	318, 1271, 1410, 1455, 1707, 2116
BstNSI	RCATGY	4 cut(s)	895, 1033, 1507, 2157
BstSCI	CCNGG	7 cut(s)	316, 673, 1269, 1408, 1453, 1705, 2114
BstSFI	CTRYAG	1 cut(s)	823
BstV1I	GCAGC	8 cut(s)	255, 663, 853, 1355, 1626, 1833, 1903, 2026
BstV2I	GAAGAC	1 cut(s)	1711
BstX2I	RGATCY	3 cut(s)	444, 532, 1557
BstYI	RGATCY	3 cut(s)	444, 532, 1557
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	6 cut(s)	29, 141, 458, 553, 981, 1746
BtgI	CCRYGG	1 cut(s)	1322
BtsI	GCAGTG	2 cut(s)	738, 2012
BtsIMutI	CAGTG	4 cut(s)	738, 1592, 2012, 2137
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	6 cut(s)	27, 370, 871, 1035, 1460, 1512
CaiI	CAGNNNCTG	1 cut(s)	740
CciI	TCATGA	1 cut(s)	1299
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	2 cut(s)	25, 974
Cfr13I	GGNCC	6 cut(s)	117, 320, 1711, 1744, 1754, 1826
CseI	GACGC	5 cut(s)	142, 244, 980, 1062, 1092
CspCI	CAANNNNNGTGG	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	515, 729
DpnI	GATC	8 cut(s)	99, 446, 534, 1308, 1559, 1671, 1877, 1886
DpnII	GATC	8 cut(s)	97, 444, 532, 1306, 1557, 1669, 1875, 1884
DraIII	CACNNNGTG	1 cut(s)	1184
EaeI	YGGCCR	4 cut(s)	27, 456, 551, 979
Eam1104I	CTCTTC	4 cut(s)	961, 1141, 1374, 2099
EarI	CTCTTC	4 cut(s)	961, 1141, 1374, 2099
EciI	GGCGGA	2 cut(s)	554, 988
Eco130I	CCWWGG	2 cut(s)	1322, 1694
Eco147I	AGGCCT	1 cut(s)	141
Eco24I	GRGCYC	2 cut(s)	201, 589
Eco32I	GATATC	2 cut(s)	219, 351
Eco47I	GGWCC	5 cut(s)	117, 320, 1711, 1754, 1826
Eco72I	CACGTG	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	580
EcoO109I	RGGNCCY	2 cut(s)	1744, 1826
EcoRII	CCWGG	6 cut(s)	316, 1269, 1408, 1453, 1705, 2114
EcoRV	GATATC	2 cut(s)	219, 351
EcoT14I	CCWWGG	2 cut(s)	1322, 1694
EcoT22I	ATGCAT	1 cut(s)	1732
EcoT38I	GRGCYC	2 cut(s)	201, 589
ErhI	CCWWGG	2 cut(s)	1322, 1694
FaqI	GGGAC	5 cut(s)	656, 1252, 1344, 1724, 1839
FauNDI	CATATG	3 cut(s)	1087, 1489, 1661
FbaI	TGATCA	1 cut(s)	1884
FblI	GTMKAC	1 cut(s)	2196
Fnu4HI	GCNGC	8 cut(s)	269, 652, 867, 1344, 1640, 1847, 1917, 2040
FriOI	GRGCYC	2 cut(s)	201, 589
Fsp4HI	GCNGC	8 cut(s)	269, 652, 867, 1344, 1640, 1847, 1917, 2040
FspBI	CTAG	5 cut(s)	137, 1283, 1541, 1647, 2045
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	8 cut(s)	269, 652, 867, 1344, 1640, 1847, 1917, 2040
GsuI	CTGGAG	2 cut(s)	1392, 2073
HaeIII	GGCC	6 cut(s)	29, 141, 458, 553, 981, 1746
HapII	CCGG	6 cut(s)	26, 59, 375, 536, 675, 975
HgaI	GACGC	5 cut(s)	142, 244, 980, 1062, 1092
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	972
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HindIII	AAGCTT	1 cut(s)	1854
HinfI	GANTC	3 cut(s)	252, 378, 1764
HpaII	CCGG	6 cut(s)	26, 59, 375, 536, 675, 975
HphI	GGTGA	1 cut(s)	2144
Hpy166II	GTNNAC	7 cut(s)	6, 132, 699, 1195, 1942, 2135, 2197
Hpy188I	TCNGA	7 cut(s)	125, 248, 288, 383, 518, 1754, 1781
Hpy188III	TCNNGA	7 cut(s)	14, 211, 375, 618, 1114, 1300, 1667
Hpy8I	GTNNAC	7 cut(s)	6, 132, 699, 1195, 1942, 2135, 2197
Hpy99I	CGWCG	5 cut(s)	44, 53, 95, 98, 238
HpyAV	CCTTC	6 cut(s)	116, 130, 292, 328, 513, 1164
HpyCH4III	ACNGT	7 cut(s)	82, 805, 1615, 1691, 1715, 1939, 2141
HpyCH4IV	ACGT	5 cut(s)	51, 342, 525, 1128, 2028
HpyF10VI	GCNNNNNNNGC	7 cut(s)	152, 274, 1352, 1916, 2011, 2048, 2057
HpyF3I	CTNAG	2 cut(s)	515, 729
HpySE526I	ACGT	5 cut(s)	51, 342, 525, 1128, 2028
Hsp92I	GRCGYC	1 cut(s)	972
HspAI	GCGC	1 cut(s)	153
Kpn2I	TCCGGA	1 cut(s)	374
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	1884
Kzo9I	GATC	8 cut(s)	97, 444, 532, 1306, 1557, 1669, 1875, 1884
LguI	GCTCTTC	1 cut(s)	2099
LmnI	GCTCC	6 cut(s)	196, 243, 337, 377, 782, 1907
Lsp1109I	GCAGC	8 cut(s)	255, 663, 853, 1355, 1626, 1833, 1903, 2026
LweI	GCATC	5 cut(s)	1101, 1184, 1717, 1739, 2038
MaeI	CTAG	5 cut(s)	137, 1283, 1541, 1647, 2045
MaeII	ACGT	5 cut(s)	51, 342, 525, 1128, 2028
MaeIII	GTNAC	2 cut(s)	736, 894
MalI	GATC	8 cut(s)	99, 446, 534, 1308, 1559, 1671, 1877, 1886
MboI	GATC	8 cut(s)	97, 444, 532, 1306, 1557, 1669, 1875, 1884
MboII	GAAGA	9 cut(s)	77, 172, 943, 948, 1158, 1361, 1567, 1711, 2116
MfeI	CAATTG	2 cut(s)	903, 1948
MflI	RGATCY	3 cut(s)	444, 532, 1557
MhlI	GDGCHC	3 cut(s)	201, 342, 589
MlsI	TGGCCA	2 cut(s)	458, 981
MluCI	AATT	7 cut(s)	702, 903, 922, 1515, 1673, 1948, 2023
MluNI	TGGCCA	2 cut(s)	458, 981
MmeI	TCCRAC	4 cut(s)	443, 698, 1732, 1945
Mox20I	TGGCCA	2 cut(s)	458, 981
Mph1103I	ATGCAT	1 cut(s)	1732
MroI	TCCGGA	1 cut(s)	374
MroNI	GCCGGC	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	302
MscI	TGGCCA	2 cut(s)	458, 981
MseI	TTAA	4 cut(s)	77, 327, 1211, 1536
MslI	CAYNNNNRTG	3 cut(s)	212, 646, 1298
Msp20I	TGGCCA	2 cut(s)	458, 981
MspA1I	CMGCKG	2 cut(s)	1346, 1916
MspI	CCGG	6 cut(s)	26, 59, 375, 536, 675, 975
MspR9I	CCNGG	7 cut(s)	318, 675, 1271, 1410, 1455, 1707, 2116
MunI	CAATTG	2 cut(s)	903, 1948
MvaI	CCWGG	6 cut(s)	318, 1271, 1410, 1455, 1707, 2116
MwoI	GCNNNNNNNGC	7 cut(s)	152, 274, 1352, 1916, 2011, 2048, 2057
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	675
NcoI	CCATGG	1 cut(s)	1322
NdeI	CATATG	3 cut(s)	1087, 1489, 1661
NdeII	GATC	8 cut(s)	97, 444, 532, 1306, 1557, 1669, 1875, 1884
NgoMIV	GCCGGC	1 cut(s)	25
NlaIV	GGNNCC	7 cut(s)	198, 373, 534, 784, 1712, 1745, 1827
NmeAIII	GCCGAG	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	736
NsiI	ATGCAT	1 cut(s)	1732
NspI	RCATGY	4 cut(s)	895, 1033, 1507, 2157
PagI	TCATGA	1 cut(s)	1299
PceI	AGGCCT	1 cut(s)	141
PciI	ACATGT	1 cut(s)	891
PciSI	GCTCTTC	1 cut(s)	2099
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 48, 398
PdiI	GCCGGC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	252, 378, 1764
PflFI	GACNNNGTC	1 cut(s)	1715
PfoI	TCCNGGA	1 cut(s)	1408
PkrI	GCNGC	8 cut(s)	270, 653, 868, 1345, 1641, 1848, 1918, 2041
PmaCI	CACGTG	1 cut(s)	343
PmlI	CACGTG	1 cut(s)	343
Ppu21I	YACGTR	2 cut(s)	343, 526
PpuMI	RGGWCCY	1 cut(s)	1826
PscI	ACATGT	1 cut(s)	891
PshBI	ATTAAT	1 cut(s)	1211
PsiI	TTATAA	2 cut(s)	476, 1385
Psp5II	RGGWCCY	1 cut(s)	1826
Psp6I	CCWGG	6 cut(s)	316, 1269, 1408, 1453, 1705, 2114
PspCI	CACGTG	1 cut(s)	343
PspGI	CCWGG	6 cut(s)	316, 1269, 1408, 1453, 1705, 2114
PspN4I	GGNNCC	7 cut(s)	198, 373, 534, 784, 1712, 1745, 1827
PspPI	GGNCC	6 cut(s)	117, 320, 1711, 1744, 1754, 1826
PspPPI	RGGWCCY	1 cut(s)	1826
PstNI	CAGNNNCTG	1 cut(s)	740
PsuI	RGATCY	3 cut(s)	444, 532, 1557
PsyI	GACNNNGTC	1 cut(s)	1715
PvuII	CAGCTG	2 cut(s)	1346, 1916
RseI	CAYNNNNRTG	3 cut(s)	212, 646, 1298
SapI	GCTCTTC	1 cut(s)	2099
SaqAI	TTAA	4 cut(s)	77, 327, 1211, 1536
SatI	GCNGC	8 cut(s)	269, 652, 867, 1344, 1640, 1847, 1917, 2040
Sau3AI	GATC	8 cut(s)	97, 444, 532, 1306, 1557, 1669, 1875, 1884
Sau96I	GGNCC	6 cut(s)	117, 320, 1711, 1744, 1754, 1826
ScaI	AGTACT	1 cut(s)	1899
ScrFI	CCNGG	7 cut(s)	318, 675, 1271, 1410, 1455, 1707, 2116
SduI	GDGCHC	3 cut(s)	201, 342, 589
SfaNI	GCATC	5 cut(s)	1101, 1184, 1717, 1739, 2038
SfcI	CTRYAG	1 cut(s)	823
SgrAI	CRCCGGYG	1 cut(s)	974
SinI	GGWCC	5 cut(s)	117, 320, 1711, 1754, 1826
SmiMI	CAYNNNNRTG	3 cut(s)	212, 646, 1298
SmlI	CTYRAG	2 cut(s)	14, 1063
SmoI	CTYRAG	2 cut(s)	14, 1063
Sse9I	AATT	7 cut(s)	702, 903, 922, 1515, 1673, 1948, 2023
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	4 cut(s)	190, 277, 539, 999
SspMI	CTAG	5 cut(s)	137, 1283, 1541, 1647, 2045
StuI	AGGCCT	1 cut(s)	141
StyD4I	CCNGG	7 cut(s)	316, 673, 1269, 1408, 1453, 1705, 2114
StyI	CCWWGG	2 cut(s)	1322, 1694
TaaI	ACNGT	7 cut(s)	82, 805, 1615, 1691, 1715, 1939, 2141
TaiI	ACGT	5 cut(s)	54, 345, 528, 1131, 2031
TaqI	TCGA	4 cut(s)	63, 212, 610, 1115
TasI	AATT	7 cut(s)	702, 903, 922, 1515, 1673, 1948, 2023
TatI	WGTACW	4 cut(s)	888, 927, 1897, 2079
TfiI	GAWTC	3 cut(s)	252, 378, 1764
Tru1I	TTAA	4 cut(s)	77, 327, 1211, 1536
Tru9I	TTAA	4 cut(s)	77, 327, 1211, 1536
TscAI	CASTG	4 cut(s)	745, 1592, 2012, 2144
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	8 cut(s)	268, 651, 866, 1343, 1639, 1846, 1916, 2039
Tsp45I	GTSAC	1 cut(s)	736
TspGWI	ACGGA	5 cut(s)	62, 209, 211, 312, 1158
TspRI	CASTG	4 cut(s)	745, 1592, 2012, 2144
Tth111I	GACNNNGTC	1 cut(s)	1715
VpaK11BI	GGWCC	5 cut(s)	117, 320, 1711, 1754, 1826
VspI	ATTAAT	1 cut(s)	1211
XagI	CCTNNNNNAGG	1 cut(s)	580
XceI	RCATGY	4 cut(s)	895, 1033, 1507, 2157
XcmI	CCANNNNNNNNNTGG	2 cut(s)	909, 1869
XmiI	GTMKAC	1 cut(s)	2196
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	5 cut(s)	137, 1283, 1541, 1647, 2045
ZrmI	AGTACT	1 cut(s)	1899
Zsp2I	ATGCAT	1 cut(s)	1732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.